genome.fa.s13367.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01013367.1 Kokia drynarioides strain JFW-HI SEQ_128390, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  69134

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5--22048	216	102.3	215	78	6	18624	40	14	16	28	1.87
5--22048	432	51.2	431	79	5	20987	40	14	16	28	1.87
2809--2856	22	2.3	23	79	17	59	47	10	2	39	1.49
2818--2866	21	2.3	22	79	6	57	51	14	6	28	1.66
6856--6946	46	2.0	46	86	4	130	49	13	7	29	1.69
7004--7372	195	1.9	195	91	1	605	40	14	16	28	1.88
22270--22315	3	15.3	3	100	0	92	34	0	0	65	0.93
24626--24802	40	4.4	39	83	6	203	32	20	21	24	1.98
24626--24803	80	2.2	79	88	1	266	32	20	21	24	1.98
33719--33769	8	7.0	7	80	14	59	78	0	21	0	0.75
33719--33769	15	3.5	15	79	15	54	78	0	21	0	0.75
33721--33766	21	2.2	21	92	7	76	78	0	21	0	0.76
34650--34859	49	4.3	49	74	1	179	35	13	28	22	1.92
34686--34880	97	2.0	98	79	1	212	33	15	28	22	1.95
35157--35245	40	2.2	40	94	4	153	32	19	15	32	1.93
35248--35542	40	7.4	40	78	6	271	33	22	17	26	1.96
35254--35539	78	3.6	79	82	2	324	33	23	17	25	1.96
35455--35641	100	1.9	99	80	3	223	33	19	16	31	1.93
35153--36315	297	3.9	295	79	9	1192	32	24	17	26	1.97
35555--35736	78	2.3	79	90	0	285	32	25	17	24	1.96
35630--36091	119	3.9	118	75	6	380	31	25	17	24	1.97
35753--36315	79	7.1	79	84	4	681	30	26	17	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35753--36315	236	2.4	237	85	3	749	30	26	17	25	1.98
36843--36875	4	8.5	4	93	6	59	24	0	0	75	0.80
36791--36942	79	1.9	80	94	2	272	40	0	3	55	1.18
55270--55320	23	2.3	23	80	13	61	5	17	1	74	1.11
55909--55951	17	2.4	18	88	7	61	60	9	11	18	1.57

Tables:   1

The End!