genome.fa.s13368.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01013368.1 Kokia drynarioides strain JFW-HI SEQ_128391, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  267042

Tables:   1   

This is table  1  of  1  ( 79 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1--769	205	3.8	204	89	1	1085	37	19	22	21	1.95
648--718	37	1.9	37	85	5	99	43	21	16	18	1.88
1091--1152	6	10.7	6	73	13	58	40	1	4	53	1.32
1081--1123	17	2.6	17	88	3	61	32	0	6	60	1.23
1091--1159	23	3.0	23	78	0	84	42	1	4	52	1.30
1092--1152	17	3.5	17	78	10	61	40	1	4	52	1.33
1095--1152	11	5.1	11	74	15	55	41	1	5	51	1.34
1157--1185	14	2.0	15	93	6	51	51	20	6	20	1.70
1815--1880	3	22.0	3	73	6	53	57	3	3	36	1.29
2924--3291	29	12.7	29	73	18	266	33	27	5	32	1.81
2915--3292	30	13.0	29	72	16	259	33	28	6	32	1.82
2924--3313	28	13.5	28	68	19	166	34	27	6	32	1.82
6216--6249	17	2.0	17	88	0	50	64	5	5	23	1.38
7896--7925	15	2.0	15	93	0	51	6	16	0	76	0.99
11787--11854	33	2.1	33	100	0	136	45	16	5	32	1.71
16539--16572	17	2.0	17	88	0	50	64	5	5	23	1.38
28451--29135	342	2.0	342	92	0	1129	32	17	19	30	1.95
32541--32584	18	2.4	18	84	0	61	31	4	2	61	1.28
37479--37517	21	1.9	20	89	5	60	33	23	7	35	1.83
39327--39378	20	2.5	20	84	6	68	28	1	1	67	1.12
39345--39387	20	2.2	20	86	0	59	25	2	2	69	1.12
43471--43660	42	4.5	43	83	8	212	24	25	11	38	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52308--52341	17	2.1	16	88	5	50	50	11	0	38	1.39
56944--56983	2	20.0	2	100	0	80	50	0	0	50	1.00
56983--57014	2	16.0	2	100	0	64	0	0	50	50	1.00
66043--66130	43	2.0	43	100	0	176	31	22	22	22	1.98
66047--66114	21	3.2	21	64	12	57	26	23	23	26	2.00
77279--77336	18	3.2	18	78	4	55	51	5	0	43	1.24
77279--77347	18	3.7	18	73	9	50	52	4	1	42	1.30
78566--78621	22	2.5	22	80	5	69	66	0	8	25	1.21
86925--86962	18	2.1	18	90	5	58	81	0	15	2	0.80
86927--86976	25	2.0	26	88	4	75	80	0	16	4	0.87
87290--87506	112	1.9	113	89	0	337	30	18	11	39	1.86
87943--88927	49	20.1	49	77	4	752	34	14	26	23	1.94
90083--90122	19	2.1	19	86	9	55	45	20	17	17	1.86
100629--100674	14	3.3	14	77	16	51	56	2	0	41	1.11
119668--119746	32	2.4	33	87	2	124	48	11	15	25	1.78
125436--125492	17	3.5	16	81	11	71	36	0	1	61	1.07
125448--125489	21	2.0	22	86	13	61	42	0	2	54	1.13
127249--127285	19	1.9	19	88	0	56	16	29	18	35	1.93
130339--130376	19	2.0	19	85	10	51	36	5	5	52	1.47
130450--130493	23	2.0	22	86	4	61	36	2	18	43	1.63
137399--137444	23	2.0	23	100	0	92	34	8	17	39	1.80
139172--139215	21	2.1	21	84	12	56	63	0	4	31	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
142582--142635	17	3.2	17	86	5	74	59	38	0	1	1.08
142586--142635	6	9.2	5	85	10	55	58	40	0	2	1.10
142582--142635	11	4.9	11	78	13	58	59	38	0	1	1.08
142712--142764	13	4.0	13	85	9	72	15	16	24	43	1.87
142712--142748	14	2.7	14	91	4	58	16	18	27	37	1.92
144232--144261	2	15.0	2	100	0	60	50	0	0	50	1.00
149074--149108	14	2.5	14	95	0	61	31	8	25	34	1.86
149812--149886	5	14.0	5	78	9	60	52	40	2	5	1.38
149818--149901	43	2.0	42	97	2	159	50	38	4	7	1.51
149812--149889	6	13.3	6	79	12	58	52	39	2	5	1.37
166375--166561	52	3.6	53	85	5	258	25	14	24	35	1.94
168197--168265	35	2.0	35	91	0	111	43	11	14	30	1.81
169529--169723	105	1.9	105	81	2	239	32	24	11	32	1.90
169795--170194	105	3.8	105	81	3	437	31	22	13	32	1.93
178046--178076	14	2.2	14	94	0	53	77	9	0	12	0.99
186180--186268	40	2.2	40	82	4	99	23	14	33	28	1.94
186180--186271	27	3.4	27	68	5	71	23	15	32	28	1.95
187543--187589	2	23.5	2	100	0	94	51	0	0	48	1.00
190292--190333	21	2.0	20	82	13	50	50	2	4	42	1.36
197857--197903	23	2.0	23	91	0	76	61	12	12	12	1.57
211699--211766	34	2.0	34	97	0	127	44	11	22	22	1.85
211943--212066	62	2.0	61	92	1	203	42	9	12	34	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
212376--212423	25	2.0	24	91	4	78	43	2	0	54	1.12
213180--213395	109	1.9	112	84	7	289	41	16	10	31	1.83
215302--215944	45	14.1	45	84	3	680	26	17	23	32	1.96
215302--215944	91	7.0	90	81	6	634	26	17	23	32	1.96
218487--218541	28	1.9	29	85	3	76	45	10	12	30	1.77
220814--220845	14	2.2	15	94	5	57	6	28	15	50	1.68
222767--222956	94	2.0	93	97	1	362	20	17	34	27	1.94
224256--224307	24	2.2	24	85	0	68	55	7	3	32	1.46
227643--227737	19	5.0	19	82	0	127	28	20	29	22	1.98
233381--233414	17	1.9	18	88	5	52	23	5	8	61	1.47
250647--250725	40	2.0	40	84	0	104	26	16	30	26	1.97
257963--258057	50	1.9	49	97	0	172	34	22	23	18	1.95
260633--260675	23	1.9	22	85	4	59	34	0	16	48	1.46

Tables:   1

The End!