Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01001337.1 Kokia drynarioides strain JFW-HI SEQ_112781, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 705

Length: 1176
ACGTcount: A:0.39, C:0.10, G:0.10, T:0.40


Found at i:554 original size:19 final size:20

Alignment explanation


    Indices: 532--575  Score: 63
    Period size: 20  Copynumber: 2.2  Consensus size: 20

        522 TTATACCAAA

                                
        532 ATTTATTTGTA-CTTTTAAT
          1 ATTTATTTGTATCTTTTAAT

                    *   *       
        551 ATTTATTTTTATTTTTTAAT
          1 ATTTATTTGTATCTTTTAAT

                 
        571 ATTTA
          1 ATTTA

        576 CATTAAAATA


Statistics
Matches: 22,  Mismatches: 2, Indels: 1
        0.88            0.08        0.04

Matches are distributed among these distances:
  19   10  0.45
  20   12  0.55

ACGTcount: A:0.27, C:0.02, G:0.02, T:0.68


Consensus pattern (20 bp):   
ATTTATTTGTATCTTTTAAT
Done.