Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01013370.1 Kokia drynarioides strain JFW-HI SEQ_128393, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 87046
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.35
Warning! 72 characters in sequence are not A, C, G, or T
Found at i:69 original size:4 final size:4
Alignment explanation
Indices: 50--134 Score: 66
Period size: 4 Copynumber: 21.0 Consensus size: 4
40 ACACATTATA
* * * * *
50 TTTC TTTC CTTC -TTC TTTC TTTCC TCTC CTTC -TTC TTTT TTTCC TCTC
1 TTTC TTTC TTTC TTTC TTTC TTT-C TTTC TTTC TTTC TTTC TTT-C TTTC
* *
98 CTTC TTCC TTTC TTTC TTTC TTTCC TTTC TTTC TTTC
1 TTTC TTTC TTTC TTTC TTTC TTT-C TTTC TTTC TTTC
135 CCGTTTATTT
Statistics
Matches: 64, Mismatches: 12, Indels: 10
0.74 0.14 0.12
Matches are distributed among these distances:
3 6 0.09
4 49 0.77
5 9 0.14
ACGTcount: A:0.00, C:0.34, G:0.00, T:0.66
Consensus pattern (4 bp):
TTTC
Found at i:81 original size:20 final size:20
Alignment explanation
Indices: 56--135 Score: 99
Period size: 20 Copynumber: 3.9 Consensus size: 20
46 TATATTTCTT
56 TCCTTCTTCTTTCTTTCCTC
1 TCCTTCTTCTTTCTTTCCTC
*
76 TCCTTCTTCTTTTTTTCCTC
1 TCCTTCTTCTTTCTTTCCTC
*
96 TCCTTCTTCCTTTCTTT-CTT
1 TCCTTCTT-CTTTCTTTCCTC
*
116 TCTTTCCTTTCTTTCTTTCC
1 TCCTT-C-TTCTTTCTTTCC
136 CGTTTATTTG
Statistics
Matches: 52, Mismatches: 4, Indels: 6
0.84 0.06 0.10
Matches are distributed among these distances:
20 33 0.63
21 16 0.31
22 3 0.06
ACGTcount: A:0.00, C:0.36, G:0.00, T:0.64
Consensus pattern (20 bp):
TCCTTCTTCTTTCTTTCCTC
Found at i:83 original size:17 final size:17
Alignment explanation
Indices: 50--134 Score: 81
Period size: 17 Copynumber: 5.2 Consensus size: 17
40 ACACATTATA
50 TTTCTTTCC-TT-CTTC
1 TTTCTTTCCTTTCCTTC
*
65 TTTCTTTCCTCTCCTTC
1 TTTCTTTCCTTTCCTTC
*
82 -TTCTTT-TTTTCCTCTC
1 TTTCTTTCCTTTCCT-TC
* *
98 CTTC-TTCCTTTCTTTC
1 TTTCTTTCCTTTCCTTC
*
114 TTTCTTTCCTTTCTTTC
1 TTTCTTTCCTTTCCTTC
131 TTTC
1 TTTC
135 CCGTTTATTT
Statistics
Matches: 58, Mismatches: 6, Indels: 10
0.78 0.08 0.14
Matches are distributed among these distances:
15 14 0.24
16 16 0.28
17 28 0.48
ACGTcount: A:0.00, C:0.34, G:0.00, T:0.66
Consensus pattern (17 bp):
TTTCTTTCCTTTCCTTC
Found at i:2947 original size:17 final size:17
Alignment explanation
Indices: 2912--2965 Score: 74
Period size: 17 Copynumber: 3.1 Consensus size: 17
2902 TTCATTTGGA
2912 TAAGATTAATTTTGGGTT
1 TAAGA-TAATTTTGGGTT
*
2930 TGA-ATAATTTTAGGGTT
1 TAAGATAATTTT-GGGTT
2947 TAAGATAATTTTGGGTT
1 TAAGATAATTTTGGGTT
2964 TA
1 TA
2966 TGACTAACCA
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
16 7 0.22
17 15 0.47
18 10 0.31
ACGTcount: A:0.30, C:0.00, G:0.22, T:0.48
Consensus pattern (17 bp):
TAAGATAATTTTGGGTT
Found at i:8772 original size:26 final size:27
Alignment explanation
Indices: 8707--8779 Score: 78
Period size: 26 Copynumber: 2.7 Consensus size: 27
8697 GGGTTTAAAT
*
8707 AATATATATTTATTTTATAA-AATATAA
1 AATATATATATATTTTA-AATAATATAA
*
8734 AATATAAATATATTTTAAATAAT-TAA
1 AATATATATATATTTTAAATAATATAA
* * *
8760 TATATATACATATGTTAAAT
1 AATATATATATATTTTAAAT
8780 TAAGTTGTTT
Statistics
Matches: 39, Mismatches: 6, Indels: 3
0.81 0.12 0.06
Matches are distributed among these distances:
26 21 0.54
27 18 0.46
ACGTcount: A:0.52, C:0.01, G:0.01, T:0.45
Consensus pattern (27 bp):
AATATATATATATTTTAAATAATATAA
Found at i:9134 original size:12 final size:12
Alignment explanation
Indices: 9117--9142 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
9107 ATACACTTAA
9117 AAACATTAAAAC
1 AAACATTAAAAC
9129 AAACATTAAAAC
1 AAACATTAAAAC
9141 AA
1 AA
9143 CAAAAAAATT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.69, C:0.15, G:0.00, T:0.15
Consensus pattern (12 bp):
AAACATTAAAAC
Found at i:15806 original size:14 final size:14
Alignment explanation
Indices: 15787--15822 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 14
15777 GAAAAGTAAT
*
15787 TTATTTTCTAGAAA
1 TTATTTTCTAAAAA
15801 TTATTTTCTAAAAA
1 TTATTTTCTAAAAA
*
15815 TCATTTTC
1 TTATTTTC
15823 AGTCAAACAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.33, C:0.11, G:0.03, T:0.53
Consensus pattern (14 bp):
TTATTTTCTAAAAA
Found at i:23238 original size:261 final size:255
Alignment explanation
Indices: 22737--23251 Score: 612
Period size: 261 Copynumber: 2.0 Consensus size: 255
22727 TTATTGGGGC
*
22737 GTTTGAATGGGTTTATTTTAAGACTATATTTTAGCAATCAAAAGTAATTGTCTGTGGAAAGGGAG
1 GTTTGAATGGGTTTATTTTAAGACTATATTTTAGCAATCAAAAGTAATTGTCTGTGGAAAGGAAG
*
22802 ATTTAAGTTCAGTTATTGAGGATGGGAAAGTAATGATATAATATCAGCTAGAAATGGTTTGGTTT
66 ATTTAAGTTCAGTTATTGAGGATGGGAAAGTAATGATATAATATCAGCAAGAAATGGTTTGGTTT
* * * * **
22867 GGGGGTGGAGCTATTTCGAAAAATGATAGCCGACAATAATGTTAGCTACTGGTATGGTGAATGAA
131 AGGGGTGGAGCTATTTCGAAAAATGATAGCCGACAAGAATGTTAGCCACTGGCATGAAGAATGAA
* * *
22932 TTGATGGCTTACATAGAACACATGGAAGATGTGACTTGTTGAAAGAGTGGTAATGACTGT
196 TTGATGGATCACATAGAACACATAGAAGATGTGACTTGTTGAAAGAGTGGTAATGACTGT
* * * *
22992 GTTTGAATGGGTTTATTTTGAGACTATATTTTGGCAATCAAAAGTGATTGTTTGTGGAAAAGGAA
1 GTTTGAATGGGTTTATTTTAAGACTATATTTTAGCAATCAAAAGTAATTGTCTGTGG-AAAGGAA
* * * ** **
23057 GATTTAATTTTAGTTATT-AGGAATGGGAAAGTAA-GAATATCATATCAGCAAGATGTTTTTTGG
65 GATTTAAGTTCAGTTATTGAGG-ATGGGAAAGTAATG-ATATAATATCAGCAAGAAATGGTTTGG
* * * **
23120 TTCAAGATTCAGGGTTCGG-G-TGTTTTG-AAAATGATACGTGGA-AAGAATGTCTA-CCACTGG
128 -T-----TT-AGGGGT-GGAGCTATTTCGAAAAATGATA-GCCGACAAGAATGT-TAGCCACTGG
*
23180 CATGAAGAATGAGTTGATGGATCACATAGAACACATAGAAGATGTGACTTGTTGAAAGAGTGGTA
183 CATGAAGAATGAATTGATGGATCACATAGAACACATAGAAGATGTGACTTGTTGAAAGAGTGGTA
23245 ATGACTG
248 ATGACTG
23252 ATAATTGTAC
Statistics
Matches: 219, Mismatches: 28, Indels: 20
0.82 0.10 0.07
Matches are distributed among these distances:
255 57 0.26
256 55 0.25
257 1 0.00
261 87 0.40
262 12 0.05
263 5 0.02
264 2 0.01
ACGTcount: A:0.33, C:0.08, G:0.27, T:0.33
Consensus pattern (255 bp):
GTTTGAATGGGTTTATTTTAAGACTATATTTTAGCAATCAAAAGTAATTGTCTGTGGAAAGGAAG
ATTTAAGTTCAGTTATTGAGGATGGGAAAGTAATGATATAATATCAGCAAGAAATGGTTTGGTTT
AGGGGTGGAGCTATTTCGAAAAATGATAGCCGACAAGAATGTTAGCCACTGGCATGAAGAATGAA
TTGATGGATCACATAGAACACATAGAAGATGTGACTTGTTGAAAGAGTGGTAATGACTGT
Found at i:34404 original size:194 final size:193
Alignment explanation
Indices: 34065--34424 Score: 508
Period size: 194 Copynumber: 1.8 Consensus size: 193
34055 AAGCAGTTTA
* * *
34065 GTTGCTAAGTTAGCTGATGATGTTCTATTAACACATCAATGGCAGCTTCATTTGTATTCTGGTAC
1 GTTGCTAAGTTAGC--ATGATGTTCTATTAACACATCAACGGCAGCTCCATATGTATTCTGGTAC
* * * *
34130 TGGTAGTGCTTAATTAGACATTCCCAGAGTTGTAATAGGTTTCCCTTTCTGATTTCTGATCGTCA
64 TGGTAGTGCCTAATTAGACATTCCCAGAGTCGTAATAGGTTTCCCTTTCCGATTTCCGATCGTCA
**** *
34195 TTGTGCTGTTTTCGTGCTAA-GAACTTGTTTGTAACAAGACAGGGTCGAAGATCTTTTCCTAGGA
129 CCACGCTGTTTTCGTGCTAAGGAA-TTGTTTGGAACAAGACAGGGTCGAAGATCTTTTCCTAGGA
34259 T
193 T
*
34260 GTTGCTAAGTTAGC-TGATGTTCTATTGACACATCAACGGCAGCTCCATATGTATTCTGGTACTG
1 GTTGCTAAGTTAGCATGATGTTCTATTAACACATCAACGGCAGCTCCATATGTATTCTGGTACTG
* * **
34324 GTAGTGTGCCTAATTAGTCATTCCCAGAGTCGTAATAGGTTTCCCTTTCCGGTTTCCGATCGTTG
66 GTA--GTGCCTAATTAGACATTCCCAGAGTCGTAATAGGTTTCCCTTTCCGATTTCCGATCGTCA
34389 CCACGCTGTTTTCGTGCTAAGGAATTGTTTGGAACA
129 CCACGCTGTTTTCGTGCTAAGGAATTGTTTGGAACA
34425 TCTCAAACTC
Statistics
Matches: 145, Mismatches: 17, Indels: 7
0.86 0.10 0.04
Matches are distributed among these distances:
192 49 0.34
194 79 0.54
195 17 0.12
ACGTcount: A:0.22, C:0.19, G:0.22, T:0.37
Consensus pattern (193 bp):
GTTGCTAAGTTAGCATGATGTTCTATTAACACATCAACGGCAGCTCCATATGTATTCTGGTACTG
GTAGTGCCTAATTAGACATTCCCAGAGTCGTAATAGGTTTCCCTTTCCGATTTCCGATCGTCACC
ACGCTGTTTTCGTGCTAAGGAATTGTTTGGAACAAGACAGGGTCGAAGATCTTTTCCTAGGAT
Found at i:49415 original size:5 final size:5
Alignment explanation
Indices: 49405--49438 Score: 68
Period size: 5 Copynumber: 6.8 Consensus size: 5
49395 AGAGCAAGCG
49405 CCTCA CCTCA CCTCA CCTCA CCTCA CCTCA CCTC
1 CCTCA CCTCA CCTCA CCTCA CCTCA CCTCA CCTC
49439 GTTGTCATCC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 29 1.00
ACGTcount: A:0.18, C:0.62, G:0.00, T:0.21
Consensus pattern (5 bp):
CCTCA
Found at i:49670 original size:5 final size:5
Alignment explanation
Indices: 49660--49687 Score: 56
Period size: 5 Copynumber: 5.6 Consensus size: 5
49650 CAAAAATACT
49660 AGGAC AGGAC AGGAC AGGAC AGGAC AGG
1 AGGAC AGGAC AGGAC AGGAC AGGAC AGG
49688 GAGAACATAG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.39, C:0.18, G:0.43, T:0.00
Consensus pattern (5 bp):
AGGAC
Found at i:50468 original size:3 final size:3
Alignment explanation
Indices: 50460--50509 Score: 100
Period size: 3 Copynumber: 16.7 Consensus size: 3
50450 TGTGAGATTT
50460 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
50508 AT
1 AT
50510 GTGGTTGGGT
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 47 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
ATA
Found at i:52200 original size:39 final size:39
Alignment explanation
Indices: 52157--52243 Score: 129
Period size: 39 Copynumber: 2.2 Consensus size: 39
52147 CAATTACTAC
*
52157 AATTTGATTGCTTTTTAAAAAATTTAGTCTCTTTATTAT
1 AATTTGATCGCTTTTTAAAAAATTTAGTCTCTTTATTAT
* * * *
52196 AATTTTATCGTTTTTTCACAAATTTAGTCTCTTTATTAT
1 AATTTGATCGCTTTTTAAAAAATTTAGTCTCTTTATTAT
52235 AATTTGATC
1 AATTTGATC
52244 ATTTCTAATT
Statistics
Matches: 42, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
39 42 1.00
ACGTcount: A:0.29, C:0.10, G:0.07, T:0.54
Consensus pattern (39 bp):
AATTTGATCGCTTTTTAAAAAATTTAGTCTCTTTATTAT
Found at i:52238 original size:19 final size:19
Alignment explanation
Indices: 52177--52239 Score: 60
Period size: 19 Copynumber: 3.3 Consensus size: 19
52167 CTTTTTAAAA
52177 AATTTAGTCTCTTTATTAT
1 AATTTAGTCTCTTTATTAT
*
52196 AATTTTA-TCGT-TTT-TTCACA
1 AA-TTTAGTC-TCTTTATT-A-T
52216 AATTTAGTCTCTTTATTAT
1 AATTTAGTCTCTTTATTAT
52235 AATTT
1 AATTT
52240 GATCATTTCT
Statistics
Matches: 35, Mismatches: 2, Indels: 14
0.69 0.04 0.27
Matches are distributed among these distances:
18 2 0.06
19 18 0.51
20 13 0.37
21 2 0.06
ACGTcount: A:0.27, C:0.11, G:0.05, T:0.57
Consensus pattern (19 bp):
AATTTAGTCTCTTTATTAT
Found at i:52787 original size:13 final size:13
Alignment explanation
Indices: 52769--52793 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
52759 GCAGTCTTTG
52769 TCCCATTTTGGTC
1 TCCCATTTTGGTC
52782 TCCCATTTTGGT
1 TCCCATTTTGGT
52794 AGCAATCTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.08, C:0.28, G:0.16, T:0.48
Consensus pattern (13 bp):
TCCCATTTTGGTC
Found at i:54575 original size:17 final size:17
Alignment explanation
Indices: 54553--54586 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
54543 AGACCGCACG
54553 ATGTGGGTTAGCACCAT
1 ATGTGGGTTAGCACCAT
54570 ATGTGGGTTAGCACCAT
1 ATGTGGGTTAGCACCAT
54587 CATATAGGCG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.24, C:0.18, G:0.29, T:0.29
Consensus pattern (17 bp):
ATGTGGGTTAGCACCAT
Found at i:60655 original size:21 final size:20
Alignment explanation
Indices: 60624--60705 Score: 69
Period size: 21 Copynumber: 4.0 Consensus size: 20
60614 CAATTTCTTC
*
60624 TTTTGTATGTTTAAATCGAT
1 TTTTATATGTTTAAATCGAT
*
60644 TGTTTATATGTTTATAAGTAG-T
1 T-TTTATATGTTTA-AA-TCGAT
* * *
60666 TTTTTTCT-TTTAAATCAAT
1 TTTTATATGTTTAAATCGAT
60685 TATTTATATGTTTAAATCGAT
1 T-TTTATATGTTTAAATCGAT
60706 GGTTACATAA
Statistics
Matches: 47, Mismatches: 9, Indels: 11
0.70 0.13 0.16
Matches are distributed among these distances:
18 1 0.02
19 4 0.09
20 10 0.21
21 26 0.55
22 4 0.09
23 2 0.04
ACGTcount: A:0.28, C:0.05, G:0.11, T:0.56
Consensus pattern (20 bp):
TTTTATATGTTTAAATCGAT
Found at i:65781 original size:20 final size:20
Alignment explanation
Indices: 65742--65781 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
65732 AACTCGACTA
**
65742 GACTCGATTCGAAATTTTTT
1 GACTCGATTCGAAAAATTTT
65762 GACTCGATTCGAAAAATTTT
1 GACTCGATTCGAAAAATTTT
65782 CAAATTGAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.30, C:0.15, G:0.15, T:0.40
Consensus pattern (20 bp):
GACTCGATTCGAAAAATTTT
Found at i:70446 original size:31 final size:31
Alignment explanation
Indices: 70411--70489 Score: 81
Period size: 31 Copynumber: 2.5 Consensus size: 31
70401 ATTTTACATT
*
70411 AAGTTCAAGGATCAAAATGGA-CTTAATTGTC
1 AAGTTCAAGGACCAAAATGGATC-TAATTGTC
* * *
70442 AAGTTCATGTACCAACATGGATCTAATTGTC
1 AAGTTCAAGGACCAAAATGGATCTAATTGTC
*
70473 AAGCTT-AAGGACTAAAA
1 AAG-TTCAAGGACCAAAA
70490 ATTACATTAA
Statistics
Matches: 38, Mismatches: 8, Indels: 4
0.76 0.16 0.08
Matches are distributed among these distances:
31 35 0.92
32 3 0.08
ACGTcount: A:0.39, C:0.15, G:0.18, T:0.28
Consensus pattern (31 bp):
AAGTTCAAGGACCAAAATGGATCTAATTGTC
Found at i:74430 original size:31 final size:32
Alignment explanation
Indices: 74367--74445 Score: 90
Period size: 31 Copynumber: 2.5 Consensus size: 32
74357 TTCTGAAAAA
* * *
74367 TCAAAGAAATATATAAAAGTACATAAACATTT
1 TCAAAGAAATATATAAAAATAAAAAAACATTT
*
74399 TCAAA-AAATATATAAAAATAAAAAAATATTT
1 TCAAAGAAATATATAAAAATAAAAAAACATTT
*
74430 TGATAAGAAATA-ATAA
1 TCA-AAGAAATATATAA
74446 TATATATAAT
Statistics
Matches: 40, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
31 24 0.60
32 11 0.28
33 5 0.12
ACGTcount: A:0.62, C:0.05, G:0.05, T:0.28
Consensus pattern (32 bp):
TCAAAGAAATATATAAAAATAAAAAAACATTT
Found at i:74563 original size:19 final size:19
Alignment explanation
Indices: 74541--74608 Score: 66
Period size: 18 Copynumber: 3.5 Consensus size: 19
74531 ATTTATTTAT
74541 TTATTTTTATATATTATTA
1 TTATTTTTATATATTATTA
* *
74560 TTATTTTTTATTAACAATATTA
1 TTA-TTTTTA-T-ATATTATTA
*
74582 TTATTTTTGTAT-TTATTA
1 TTATTTTTATATATTATTA
*
74600 CTATTTTTA
1 TTATTTTTA
74609 AAAAATATTT
Statistics
Matches: 39, Mismatches: 7, Indels: 7
0.74 0.13 0.13
Matches are distributed among these distances:
18 12 0.31
19 4 0.10
20 7 0.18
21 6 0.15
22 10 0.26
ACGTcount: A:0.29, C:0.03, G:0.01, T:0.66
Consensus pattern (19 bp):
TTATTTTTATATATTATTA
Found at i:74565 original size:27 final size:26
Alignment explanation
Indices: 74533--74599 Score: 73
Period size: 25 Copynumber: 2.5 Consensus size: 26
74523 TTTTTTGAAT
***
74533 TTATTTATTTATTTTTATATATTATTA
1 TTATTTATTTATTAACA-ATATTATTA
74560 TTATTT-TTTATTAACAATATTATTA
1 TTATTTATTTATTAACAATATTATTA
*
74585 TTTTTGTATTTATTA
1 TTATT-TATTTATTA
74600 CTATTTTTAA
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
25 13 0.38
26 8 0.24
27 13 0.38
ACGTcount: A:0.30, C:0.01, G:0.01, T:0.67
Consensus pattern (26 bp):
TTATTTATTTATTAACAATATTATTA
Found at i:74586 original size:41 final size:40
Alignment explanation
Indices: 74534--74648 Score: 112
Period size: 41 Copynumber: 2.9 Consensus size: 40
74524 TTTTTGAATT
*
74534 TATTTATTTATTTTTATATATTATTATTATTTTTTATTAACAA
1 TATTTA-TTATTTTTATATATTATTATTATTTTTTA--AAAAA
* *
74577 TA-TTATTATTTTTGTAT-TTATTACTA-TTTTTAAAAAA
1 TATTTATTATTTTTATATATTATTATTATTTTTTAAAAAA
* *
74614 TATTTATGTACTTTTATATATTTATT-TGATTTTTT
1 TATTTAT-TATTTTTATATA-TTATTATTATTTTTT
74649 TAGAAATAAG
Statistics
Matches: 60, Mismatches: 7, Indels: 12
0.76 0.09 0.15
Matches are distributed among these distances:
37 6 0.10
38 4 0.07
39 15 0.25
40 9 0.15
41 21 0.35
42 3 0.05
43 2 0.03
ACGTcount: A:0.30, C:0.03, G:0.03, T:0.64
Consensus pattern (40 bp):
TATTTATTATTTTTATATATTATTATTATTTTTTAAAAAA
Found at i:85483 original size:10 final size:10
Alignment explanation
Indices: 85468--85503 Score: 72
Period size: 10 Copynumber: 3.6 Consensus size: 10
85458 AACCTATTAA
85468 AAATTATACC
1 AAATTATACC
85478 AAATTATACC
1 AAATTATACC
85488 AAATTATACC
1 AAATTATACC
85498 AAATTA
1 AAATTA
85504 ATGTATAAAG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 26 1.00
ACGTcount: A:0.53, C:0.17, G:0.00, T:0.31
Consensus pattern (10 bp):
AAATTATACC
Done.