Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01013371.1 Kokia drynarioides strain JFW-HI SEQ_128394, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 9353
ACGTcount: A:0.26, C:0.23, G:0.16, T:0.33

Warning! 142 characters in sequence are not A, C, G, or T


Found at i:5577 original size:65 final size:65

Alignment explanation


    Indices: 5501--5632  Score: 248
    Period size: 66  Copynumber: 2.0  Consensus size: 65

       5491 AACTGGTTAG

                                                                             
       5501 GAAGTTCGACTCTTCTTTTT-TTTTTGGCTCTATCACCTCATTTTAAATCTGGTATGCCAAGGTC
          1 GAAGTTCGACTCTTCTTTTTGTTTTTGGCTCTATCACCTCATTTTAAATCTGGTATGCCAAGGTC

                                                                             
       5565 NGAAGTTCGACTCTTCTTTTTGTTTTTGGCTCTATCACCTCATTTTAAATCTGGTATGCCAAGGT
          1 -GAAGTTCGACTCTTCTTTTTGTTTTTGGCTCTATCACCTCATTTTAAATCTGGTATGCCAAGGT

             
       5630 C
         65 C

              
       5631 GA
          1 GA

       5633 CCGAGTTATT


Statistics
Matches: 66,  Mismatches: 0, Indels: 2
        0.97            0.00        0.03

Matches are distributed among these distances:
  65   22  0.33
  66   44  0.67

ACGTcount: A:0.19, C:0.21, G:0.17, T:0.42


Consensus pattern (65 bp):   
GAAGTTCGACTCTTCTTTTTGTTTTTGGCTCTATCACCTCATTTTAAATCTGGTATGCCAAGGTC

Done.