genome.fa.s13383.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01013383.1 Kokia drynarioides strain JFW-HI SEQ_128406, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  71338

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5--362	186	1.9	186	93	1	619	52	2	4	40	1.35
319--361	20	2.1	21	86	4	61	44	0	0	55	0.99
8635--8820	96	1.9	98	84	6	252	48	5	14	31	1.66
11585--11623	19	2.0	20	85	5	53	35	0	7	56	1.28
11879--11917	19	2.1	19	85	9	53	53	5	0	41	1.23
12408--12465	29	2.0	29	83	6	73	32	13	10	43	1.78
19585--19619	18	2.0	18	94	5	63	54	0	0	45	0.99
19939--19968	14	2.1	14	100	0	60	86	0	0	13	0.57
27405--27550	57	2.6	56	86	5	197	26	50	10	13	1.73
27560--27663	42	2.5	42	85	0	145	23	51	9	15	1.72
27627--27687	30	2.0	30	84	6	79	24	52	6	16	1.67
28938--29125	59	3.2	59	82	8	211	50	10	13	26	1.73
28967--29125	31	5.3	31	67	21	97	50	10	13	25	1.73
31361--31385	3	8.3	3	100	0	50	32	36	0	32	1.58
41396--41435	21	1.9	21	90	10	64	57	0	5	37	1.21
48495--48542	20	2.3	20	83	13	62	45	31	4	18	1.68
48621--48659	20	2.0	20	94	0	69	28	10	23	38	1.87
49579--49608	16	1.9	16	93	6	53	43	23	0	33	1.54
50068--50114	15	3.2	15	72	6	51	63	0	0	36	0.94
50681--50724	23	2.0	24	82	13	58	43	4	6	45	1.51
51846--51907	29	2.1	29	85	5	81	37	14	4	43	1.67
56922--57011	44	2.0	44	95	4	164	33	17	13	35	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62010--62151	59	2.4	59	75	5	153	42	17	16	23	1.89
64248--64272	5	5.0	5	100	0	50	40	0	0	60	0.97
67443--67495	26	2.0	27	82	10	65	26	9	7	56	1.57
68620--68680	27	2.3	27	88	0	86	31	27	27	13	1.94
69096--69155	27	2.2	27	79	5	68	15	18	41	25	1.89
69639--69703	31	2.1	31	100	0	130	24	26	6	43	1.77
69793--69942	23	6.4	23	77	11	112	40	24	24	12	1.88
70651--70829	89	2.0	89	97	0	340	35	14	4	45	1.65

Tables:   1

The End!