genome.fa.s13386.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01013386.1 Kokia drynarioides strain JFW-HI SEQ_128409, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  170050

Tables:   1   

This is table  1  of  1  ( 68 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
925--965	18	2.2	18	86	4	55	43	2	19	34	1.64
1092--1238	41	3.5	41	84	1	177	23	27	15	34	1.95
1279--1320	22	2.0	21	86	13	59	45	0	2	52	1.13
2776--2824	22	2.2	22	82	13	57	44	14	2	38	1.56
3175--3396	41	5.4	41	84	4	184	22	30	17	29	1.97
3222--3396	82	2.1	81	88	5	255	21	31	18	28	1.97
3222--3403	41	4.5	40	84	6	231	20	31	19	28	1.97
3383--3423	18	2.3	18	95	0	73	9	39	26	24	1.86
3343--3455	59	1.9	58	85	1	154	20	33	20	25	1.97
3401--3500	41	2.4	41	83	3	130	18	32	23	27	1.97
3469--3625	80	1.9	82	87	2	228	20	22	18	38	1.94
3510--3626	40	2.9	40	84	0	162	20	20	18	40	1.92
6225--6250	12	2.2	12	100	0	52	34	23	26	15	1.94
8356--8404	17	2.9	17	80	14	57	26	0	4	69	1.06
19147--19185	14	2.7	15	84	15	55	38	12	5	43	1.65
21081--21196	31	3.8	30	73	13	112	20	15	18	45	1.85
21169--21214	22	2.0	23	83	4	58	17	10	17	54	1.70
21369--21435	31	2.2	31	89	5	100	44	22	10	22	1.83
21319--21697	187	2.0	187	88	1	553	33	16	13	35	1.88
22265--22297	15	2.1	16	88	5	50	69	0	0	30	0.88
22265--22345	9	9.2	9	72	20	57	64	2	1	32	1.15
22281--22358	20	4.0	20	71	20	65	65	2	1	30	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23223--23290	33	2.1	33	91	5	111	35	0	19	45	1.50
28688--28715	2	14.0	2	100	0	56	50	0	0	50	1.00
30039--30065	5	5.4	5	100	0	54	62	0	0	37	0.95
30823--30849	14	1.9	14	100	0	54	70	0	7	22	1.12
37116--37219	23	4.4	23	83	2	118	45	22	20	12	1.84
37070--37218	69	2.1	67	82	10	167	46	19	20	13	1.83
43702--43793	41	2.2	41	92	0	148	38	2	7	52	1.42
44190--44220	3	10.3	3	100	0	62	67	0	0	32	0.91
49369--49455	43	2.0	43	97	0	165	49	4	12	33	1.61
68058--68108	22	2.3	21	80	9	66	50	1	5	41	1.37
71883--72006	61	2.0	61	82	1	149	51	16	4	27	1.64
80574--81076	210	2.4	210	83	2	598	33	24	13	28	1.93
86473--86544	29	2.4	30	84	11	94	44	1	2	51	1.24
86649--86736	39	2.3	39	82	7	99	36	2	6	54	1.40
86807--86837	15	2.0	16	93	6	55	48	0	0	51	1.00
89405--89447	21	2.0	21	95	0	77	51	18	2	27	1.59
89876--89905	12	2.5	12	94	0	51	13	13	16	56	1.67
89999--90044	23	2.0	23	83	8	58	39	10	17	32	1.84
91638--91671	17	1.9	18	88	5	52	41	0	5	52	1.25
96902--96931	15	2.0	15	93	0	51	36	0	0	63	0.95
97941--97973	6	5.5	6	100	0	66	84	0	0	15	0.61
98207--98235	12	2.5	12	94	5	51	48	6	44	0	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
98379--98448	24	2.8	24	75	12	70	47	0	47	5	1.26
98388--98432	15	3.0	15	83	0	54	48	0	46	4	1.22
98888--98923	6	5.8	6	87	6	54	11	36	16	36	1.84
100195--100229	16	2.2	16	100	0	70	17	5	37	40	1.73
107210--107253	20	2.1	22	84	16	58	68	6	0	25	1.14
107210--107248	19	2.0	21	90	10	64	69	7	0	23	1.14
116895--116938	22	2.0	22	100	0	88	68	9	0	22	1.18
117309--117358	21	2.3	21	86	6	64	60	2	10	28	1.40
119809--119871	32	2.0	32	93	0	108	61	7	4	25	1.43
130385--130456	32	2.2	33	87	7	103	62	5	4	27	1.36
132081--132108	14	2.0	14	100	0	56	42	7	21	28	1.79
133071--133113	3	14.0	3	90	4	68	34	2	0	62	1.08
135463--135836	29	12.8	29	79	6	353	35	27	3	33	1.73
135464--135836	59	6.4	59	81	5	373	35	27	3	33	1.73
139053--139128	40	1.9	40	94	0	134	39	9	15	35	1.80
140079--140122	23	2.0	23	86	4	63	63	15	2	18	1.41
144311--144382	28	2.6	28	86	0	99	37	27	4	30	1.76
144329--144369	21	2.0	21	95	0	73	39	29	2	29	1.70
144373--144453	14	5.8	14	75	5	56	45	32	2	19	1.64
144373--144430	7	8.3	7	80	0	62	48	27	3	20	1.66
144444--144523	35	2.3	35	80	4	90	33	32	11	22	1.89
144529--144613	7	12.1	7	70	14	59	28	25	27	18	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
144542--144613	28	2.6	28	80	4	74	27	25	27	19	1.99
158621--158655	17	2.0	18	88	5	54	37	11	0	51	1.38

Tables:   1

The End!