genome.fa.s13390.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01013390.1 Kokia drynarioides strain JFW-HI SEQ_128414, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  137520

Tables:   1   

This is table  1  of  1  ( 64 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
119--178	12	4.8	12	71	15	50	50	0	1	48	1.11
836--899	26	2.5	25	85	7	76	26	3	4	65	1.27
2435--2479	21	2.1	21	84	8	56	11	11	8	68	1.39
4524--4683	30	5.4	29	78	11	141	35	25	2	36	1.70
4510--4741	29	8.0	29	76	9	172	35	26	2	36	1.69
4514--4741	59	3.9	59	77	10	191	35	25	2	36	1.68
4777--4841	30	2.2	29	81	8	69	36	23	1	38	1.64
14894--15535	39	16.5	40	76	12	428	23	33	19	23	1.97
14894--15563	116	5.8	115	74	12	500	23	32	19	24	1.97
14893--15537	77	8.3	77	77	10	591	23	33	19	23	1.97
15995--16098	17	6.1	17	81	2	127	38	1	3	55	1.29
15991--16105	6	19.7	6	69	14	53	38	1	4	55	1.30
17875--17947	30	2.5	29	78	10	78	38	24	1	35	1.64
17874--18128	29	8.7	30	79	6	224	34	26	4	34	1.76
17935--18167	59	4.1	59	80	7	250	33	27	5	33	1.79
18433--18617	99	1.9	96	92	3	307	30	18	14	36	1.90
19378--19433	17	3.4	17	73	24	57	41	0	5	53	1.24
21341--21415	24	3.1	24	90	0	114	57	9	8	25	1.57
23346--23414	24	2.9	24	88	0	75	53	10	10	26	1.66
23356--23430	24	3.1	24	90	0	105	56	8	9	26	1.59
24044--24094	23	2.2	24	82	10	61	11	7	3	76	1.13
26017--26076	20	3.0	21	82	7	79	43	31	1	23	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26410--26440	7	4.4	7	91	0	53	70	12	16	0	1.16
31398--31437	19	2.0	20	90	4	64	27	25	2	45	1.66
31398--31470	28	2.5	28	80	6	83	27	21	4	46	1.69
35570--35636	21	3.2	21	85	8	100	23	32	16	26	1.96
37369--37462	25	3.9	25	88	8	158	38	24	25	11	1.89
37369--37471	47	2.2	47	96	0	188	40	24	24	10	1.86
41958--42010	23	2.3	23	86	0	70	11	24	18	45	1.82
41998--42071	23	3.3	22	88	3	103	12	21	29	36	1.90
51700--51758	29	2.0	29	86	3	82	30	8	13	47	1.73
51905--51974	29	2.3	29	85	4	86	37	11	10	41	1.75
51905--51985	31	2.7	30	82	7	92	35	9	9	44	1.71
51605--52057	226	2.0	225	94	1	800	43	9	7	39	1.65
54319--54366	15	3.2	15	84	0	69	27	8	2	62	1.35
61971--62014	13	3.3	13	83	3	52	20	13	13	52	1.74
67640--67677	17	2.3	17	86	4	51	42	0	0	57	0.98
71728--71784	30	2.0	28	83	12	73	42	14	1	42	1.55
85272--85389	24	4.9	24	78	3	112	34	23	18	22	1.96
85372--85500	27	4.7	27	89	0	186	36	25	15	22	1.93
92206--92317	57	2.0	57	81	0	134	37	17	14	30	1.90
92204--92328	29	4.4	29	76	7	112	37	17	15	29	1.90
92223--92345	29	4.2	29	76	11	83	34	18	14	32	1.91
98316--98355	22	1.9	20	90	10	62	32	17	2	47	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
101913--101963	24	2.1	24	85	0	66	23	9	9	56	1.61
103889--103939	24	2.1	24	88	0	75	21	9	11	56	1.63
103897--103951	24	2.3	24	83	0	65	25	12	12	49	1.76
104569--104684	30	3.9	28	71	9	88	41	12	12	34	1.79
111603--111662	31	1.9	32	86	3	86	31	10	10	48	1.70
112833--112893	32	1.9	32	89	0	95	40	8	8	42	1.64
113205--113247	13	3.3	13	78	12	52	41	0	0	58	0.98
113207--113257	26	2.0	26	88	0	75	39	0	0	60	0.97
113742--113801	22	2.7	22	72	12	68	55	0	0	45	0.99
114416--114464	26	1.9	25	83	4	62	36	0	14	48	1.44
121940--121979	13	3.0	13	88	3	53	25	2	2	70	1.13
127950--128108	41	3.5	47	75	14	152	19	16	27	35	1.94
127946--128107	88	1.8	89	85	1	227	19	16	27	35	1.94
130003--130067	23	2.8	23	92	2	112	50	27	0	21	1.49
130116--130157	17	2.5	17	92	0	66	19	35	21	23	1.96
130179--130215	14	2.6	14	91	0	56	21	10	24	43	1.84
130164--130217	14	3.9	14	80	0	54	25	12	24	37	1.91
136430--136574	23	6.3	23	78	7	116	40	20	26	13	1.89
136405--136498	25	3.8	25	79	8	104	39	18	28	13	1.89
136408--136570	48	3.4	48	74	12	131	38	19	28	13	1.90

Tables:   1

The End!