genome.fa.s13397.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01013397.1 Kokia drynarioides strain JFW-HI SEQ_128421, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  116507

Tables:   1   

This is table  1  of  1  ( 49 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
599--754	23	6.6	22	74	17	91	37	18	28	15	1.91
634--747	23	4.9	23	78	10	106	36	20	28	14	1.92
609--714	48	2.2	48	84	3	133	34	18	31	15	1.92
609--747	48	2.9	47	80	8	131	35	19	29	15	1.92
4443--4475	16	2.1	16	100	0	66	18	27	30	24	1.98
6217--6257	14	2.9	15	82	10	50	0	21	0	78	0.76
6228--6275	25	2.0	25	88	8	73	2	22	2	72	1.05
6218--6267	18	2.7	18	75	25	50	2	22	0	76	0.89
6216--6275	31	2.0	30	81	15	70	1	21	1	75	0.99
21932--22728	50	16.0	50	79	3	694	22	24	16	35	1.95
21932--22734	299	2.7	299	82	2	948	22	24	16	35	1.95
21881--22718	249	3.4	245	80	5	815	22	24	17	35	1.95
22839--23165	94	3.4	92	83	5	377	25	18	19	37	1.93
22732--23463	199	3.7	199	75	8	694	26	18	17	36	1.94
25195--25227	16	1.9	18	88	11	52	9	9	0	81	0.87
35706--35751	14	3.4	14	81	3	58	30	2	0	67	1.03
35877--35931	20	2.5	21	85	11	67	60	3	0	36	1.15
35927--35986	23	2.6	24	81	7	88	43	1	0	55	1.10
41218--41433	36	6.1	36	84	4	244	26	23	15	34	1.94
47992--48074	43	1.9	43	90	4	132	28	10	2	57	1.45
49980--50008	15	1.9	15	100	0	58	27	6	0	65	1.18
50155--50218	31	2.1	30	85	8	85	18	18	4	57	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56450--57044	49	12.1	49	71	10	327	36	17	28	17	1.92
56752--57062	99	3.2	98	75	10	294	36	17	29	16	1.91
56450--56901	148	3.1	147	74	9	400	36	17	28	17	1.93
56457--57023	246	2.3	248	82	3	653	36	16	29	17	1.92
57331--57916	39	14.9	39	75	3	458	29	29	17	24	1.97
57332--58056	79	9.4	78	79	8	739	29	29	16	23	1.97
57936--58055	40	3.1	38	73	11	116	29	32	16	21	1.95
57793--58056	145	1.8	145	88	0	402	28	30	18	22	1.97
66112--66800	49	14.0	50	72	10	384	36	18	28	16	1.93
66112--66643	148	3.6	148	75	4	488	36	18	28	16	1.93
67052--67587	39	13.7	39	77	3	461	28	30	15	25	1.96
67060--67602	79	7.0	79	81	5	496	29	30	15	25	1.96
67132--67576	153	2.9	154	83	5	533	28	30	15	25	1.95
67052--67590	118	4.6	118	77	5	482	29	30	15	24	1.96
73214--73338	36	3.5	36	81	3	155	28	25	12	34	1.91
76841--76881	20	2.1	19	90	4	64	29	31	0	39	1.57
76843--76880	10	3.9	10	82	3	51	28	34	0	36	1.58
76849--76895	20	2.4	20	82	3	51	31	31	0	36	1.58
82079--82113	18	2.0	17	88	5	52	40	28	11	20	1.87
85822--85878	30	1.9	30	89	7	89	38	10	15	35	1.82
86404--86432	15	1.9	15	100	0	58	20	20	6	51	1.70
90572--90610	20	2.0	20	94	0	69	33	0	7	58	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93613--93706	46	2.1	45	89	2	143	61	9	5	23	1.47
112040--112119	40	1.9	40	82	7	97	48	1	1	48	1.17
115246--115349	50	2.1	50	98	0	199	52	10	11	25	1.69
115258--115362	50	2.1	50	91	3	167	53	13	10	22	1.70
115739--115768	8	3.8	8	95	0	51	0	40	6	53	1.27

Tables:   1

The End!