Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01013408.1 Kokia drynarioides strain JFW-HI SEQ_128433, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3425
ACGTcount: A:0.29, C:0.17, G:0.18, T:0.35

Warning! 31 characters in sequence are not A, C, G, or T


Found at i:1278 original size:11 final size:11

Alignment explanation


    Indices: 1244--1291  Score: 53
    Period size: 11  Copynumber: 4.3  Consensus size: 11

       1234 NNNNGGATCG

                  *    
       1244 AAAAGAAAAAA
          1 AAAAGAGAAAA

                       
       1255 AAAAGAGAAAA
          1 AAAAGAGAAAA

                         
       1266 AAAAGGGAGAAAA
          1 AAAA--GAGAAAA

             *         
       1279 AGAAG-GAAAA
          1 AAAAGAGAAAA

               
       1289 AAA
          1 AAA

       1292 CATGGTTGCT


Statistics
Matches: 32,  Mismatches: 3, Indels: 5
        0.80            0.08        0.12

Matches are distributed among these distances:
  10    7  0.22
  11   15  0.47
  13   10  0.31

ACGTcount: A:0.79, C:0.00, G:0.21, T:0.00


Consensus pattern (11 bp):   
AAAAGAGAAAA
Done.