Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01001341.1 Kokia drynarioides strain JFW-HI SEQ_112787, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3321
ACGTcount: A:0.34, C:0.19, G:0.15, T:0.31


Found at i:1392 original size:80 final size:80

Alignment explanation


    Indices: 1250--1463  Score: 286
    Period size: 80  Copynumber: 2.7  Consensus size: 80

       1240 TAAACCAATG

                                  *           *           * *                
       1250 ATCCTAGCACCTAATGCCTAGCAGATAAACCAC-GAAGTGAGCCCAACACTAGTTGGATTAACCA
          1 ATCCTAGCACCTAATGCCTAGCGGATAAACCACAAAAGTGAGCCCAGCTCTAGTTGGATTAACCA

                 *         
       1314 ACAAATATCCGTCAA
         66 ACAAAAATCCGTCAA

            *    *       *                                           *       
       1329 GTCCTCGCACCTACTGCCTAGCGGATAAACCACAAAAGTGAGCCCAGCTCTAGTTGGTTTAACCA
          1 ATCCTAGCACCTAATGCCTAGCGGATAAACCACAAAAGTGAGCCCAGCTCTAGTTGGATTAACCA

                           
       1394 ACAAAAATCCGTCAA
         66 ACAAAAATCCGTCAA

                  *      * *     *         **                      
       1409 ATCCTAACACCTAGTACCTAGTGGATAAACCGTAAAAGTGAGCCCAGCTCTAGTT
          1 ATCCTAGCACCTAATGCCTAGCGGATAAACCACAAAAGTGAGCCCAGCTCTAGTT

       1464 AGTTAAATTG


Statistics
Matches: 117,  Mismatches: 17, Indels: 1
        0.87            0.13        0.01

Matches are distributed among these distances:
  79   29  0.25
  80   88  0.75

ACGTcount: A:0.35, C:0.28, G:0.17, T:0.21


Consensus pattern (80 bp):   
ATCCTAGCACCTAATGCCTAGCGGATAAACCACAAAAGTGAGCCCAGCTCTAGTTGGATTAACCA
ACAAAAATCCGTCAA
Done.