Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01013414.1 Kokia drynarioides strain JFW-HI SEQ_128439, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 158383
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.34
Warning! 42 characters in sequence are not A, C, G, or T
Found at i:7 original size:2 final size:2
Alignment explanation
Indices: 1--41 Score: 82
Period size: 2 Copynumber: 20.5 Consensus size: 2
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
42 TATTTTGAAA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:898 original size:12 final size:11
Alignment explanation
Indices: 879--920 Score: 57
Period size: 12 Copynumber: 3.6 Consensus size: 11
869 CCTTCCTTAA
879 ATTATATATAT
1 ATTATATATAT
890 ATATATATATAT
1 AT-TATATATAT
*
902 ATTATCATGTAT
1 ATTAT-ATATAT
914 ATTATAT
1 ATTATAT
921 TAATTTGACT
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
11 7 0.25
12 21 0.75
ACGTcount: A:0.43, C:0.02, G:0.02, T:0.52
Consensus pattern (11 bp):
ATTATATATAT
Found at i:1004 original size:23 final size:22
Alignment explanation
Indices: 960--1004 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 22
950 TCAATGGGTA
*
960 TATTTTTTAATTGTTTGTATTT
1 TATTTTTTAATTGTTTGGATTT
982 TATTTGTTTAATT-TGTTGGATTT
1 TATTT-TTTAATTGT-TTGGATTT
1005 CGAGTTTTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
22 6 0.30
23 14 0.70
ACGTcount: A:0.18, C:0.00, G:0.13, T:0.69
Consensus pattern (22 bp):
TATTTTTTAATTGTTTGGATTT
Found at i:12548 original size:50 final size:50
Alignment explanation
Indices: 12468--12645 Score: 205
Period size: 50 Copynumber: 3.6 Consensus size: 50
12458 ATGGCGATAG
* * * *
12468 AATGACAAATCTTATACACCTAAAGCTGTAGAGGAACAGATTAAAGCCGC
1 AATGGCAAATCTTATACACCTAAAGCTGTAGAGGAGCAGATTGAAGTCGC
* * * *
12518 AATGGCAAATCTCATACACCTAAAGCTGTAGAGGGGTAGATTGAAGTCAC
1 AATGGCAAATCTTATACACCTAAAGCTGTAGAGGAGCAGATTGAAGTCGC
* * * * *
12568 ATTGGCGAATCTTATTCACCTAAAGATGTAGAGGAGCAGATTGAGGTCGC
1 AATGGCAAATCTTATACACCTAAAGCTGTAGAGGAGCAGATTGAAGTCGC
* *
12618 AA-GGACAAATCTTATACTCCTGAAGCTG
1 AATGG-CAAATCTTATACACCTAAAGCTG
12646 AAATGGAGTG
Statistics
Matches: 104, Mismatches: 23, Indels: 2
0.81 0.18 0.02
Matches are distributed among these distances:
49 2 0.02
50 102 0.98
ACGTcount: A:0.36, C:0.19, G:0.22, T:0.23
Consensus pattern (50 bp):
AATGGCAAATCTTATACACCTAAAGCTGTAGAGGAGCAGATTGAAGTCGC
Found at i:14895 original size:23 final size:22
Alignment explanation
Indices: 14851--14895 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 22
14841 TTAATGGGTA
*
14851 TATTTTTTAATTGTTTGTATTT
1 TATTTTTTAATTGTTTGGATTT
14873 TATTTGTTTAATT-TGTTGGATTT
1 TATTT-TTTAATTGT-TTGGATTT
14896 CGAGTTTTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
22 6 0.30
23 14 0.70
ACGTcount: A:0.18, C:0.00, G:0.13, T:0.69
Consensus pattern (22 bp):
TATTTTTTAATTGTTTGGATTT
Found at i:21603 original size:20 final size:22
Alignment explanation
Indices: 21553--21603 Score: 56
Period size: 20 Copynumber: 2.5 Consensus size: 22
21543 TATTTAAACA
21553 TTTTTAT-ATAATTTTTATAGTT
1 TTTTTATCATAA-TTTTATAGTT
*
21575 CTTTT-TCATAA-TTTATA-TT
1 TTTTTATCATAATTTTATAGTT
21594 TTTTTATCAT
1 TTTTTATCAT
21604 GTTAACAGTT
Statistics
Matches: 25, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
19 6 0.24
20 10 0.40
21 1 0.04
22 8 0.32
ACGTcount: A:0.25, C:0.06, G:0.02, T:0.67
Consensus pattern (22 bp):
TTTTTATCATAATTTTATAGTT
Found at i:21823 original size:24 final size:23
Alignment explanation
Indices: 21778--21825 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
21768 TTTCTCTAAT
* * *
21778 TTTTTTATGATTTTTTTTTATAA
1 TTTTTAATGATTTTTATGTATAA
21801 TTTTTAATGATTTTATATGTATAA
1 TTTTTAATGATTTT-TATGTATAA
21825 T
1 T
21826 ACTAATTTCT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
23 13 0.62
24 8 0.38
ACGTcount: A:0.27, C:0.00, G:0.06, T:0.67
Consensus pattern (23 bp):
TTTTTAATGATTTTTATGTATAA
Found at i:24023 original size:16 final size:16
Alignment explanation
Indices: 24002--24062 Score: 79
Period size: 16 Copynumber: 3.8 Consensus size: 16
23992 TTTGGTTCGC
24002 TGTAATGGAATAGAAA
1 TGTAATGGAATAGAAA
*
24018 TGTAATAGAATA-AAA
1 TGTAATGGAATAGAAA
*
24033 TTGTAATGGAATAGAAC
1 -TGTAATGGAATAGAAA
*
24050 TGCAATGGAATAG
1 TGTAATGGAATAG
24063 GACTGTAATT
Statistics
Matches: 39, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
15 3 0.08
16 34 0.87
17 2 0.05
ACGTcount: A:0.48, C:0.03, G:0.23, T:0.26
Consensus pattern (16 bp):
TGTAATGGAATAGAAA
Found at i:24070 original size:32 final size:32
Alignment explanation
Indices: 24001--24071 Score: 88
Period size: 32 Copynumber: 2.2 Consensus size: 32
23991 GTTTGGTTCG
*
24001 CTGTAATGGAATAGAAATGTAATAGAATAAAA
1 CTGTAATGGAATAGAAATGCAATAGAATAAAA
* * * **
24033 TTGTAATGGAATAGAACTGCAATGGAATAGGA
1 CTGTAATGGAATAGAAATGCAATAGAATAAAA
24065 CTGTAAT
1 CTGTAAT
24072 TAGTAATTCA
Statistics
Matches: 32, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.45, C:0.06, G:0.23, T:0.27
Consensus pattern (32 bp):
CTGTAATGGAATAGAAATGCAATAGAATAAAA
Found at i:24370 original size:25 final size:24
Alignment explanation
Indices: 24342--24392 Score: 59
Period size: 24 Copynumber: 2.1 Consensus size: 24
24332 TAATATAATT
*
24342 ATTATTAAAATATGA-ATTAGTAAAA
1 ATTA-TAAAATATAATATTAG-AAAA
*
24367 ATTATAATATATAATATTAGAAAA
1 ATTATAAAATATAATATTAGAAAA
24391 AT
1 AT
24393 AATATATAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
24 14 0.61
25 9 0.39
ACGTcount: A:0.57, C:0.00, G:0.06, T:0.37
Consensus pattern (24 bp):
ATTATAAAATATAATATTAGAAAA
Found at i:28576 original size:16 final size:17
Alignment explanation
Indices: 28557--28589 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
28547 TAACAAATAG
28557 TACACAAAT-CAAAACA
1 TACACAAATCCAAAACA
*
28573 TACACAAGTCCAAAACA
1 TACACAAATCCAAAACA
28590 GCATCTCACC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 8 0.53
17 7 0.47
ACGTcount: A:0.58, C:0.27, G:0.03, T:0.12
Consensus pattern (17 bp):
TACACAAATCCAAAACA
Found at i:34124 original size:61 final size:62
Alignment explanation
Indices: 34053--34188 Score: 220
Period size: 62 Copynumber: 2.2 Consensus size: 62
34043 TTATTAAATA
* * * * *
34053 TAATAGAATTATTATTAAATATAATTTAAT-AAAAATGATAATAAATAATTTAATCATATTT
1 TAATATAATTATTATTAAATATAATTTAATAAAAAATAATAATAAATAATTTAATAACATCT
34114 TAATATAATTATTATTAAATATAATTTAATAAAAAATAATAATAAATAATTTAATAACATCT
1 TAATATAATTATTATTAAATATAATTTAATAAAAAATAATAATAAATAATTTAATAACATCT
34176 TAATATAATTATT
1 TAATATAATTATT
34189 TTTATATTAA
Statistics
Matches: 69, Mismatches: 5, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
61 29 0.42
62 40 0.58
ACGTcount: A:0.54, C:0.02, G:0.01, T:0.43
Consensus pattern (62 bp):
TAATATAATTATTATTAAATATAATTTAATAAAAAATAATAATAAATAATTTAATAACATCT
Found at i:34138 original size:21 final size:21
Alignment explanation
Indices: 34043--34143 Score: 64
Period size: 21 Copynumber: 4.9 Consensus size: 21
34033 ATTGTTATTG
*
34043 TTATTAAATATAATAGAATTA
1 TTATTAAATATAATATAATTA
* *
34064 TTATTAAATATAATTTAATAA
1 TTATTAAATATAATATAATTA
** * *
34085 AAATGATA-ATAA-ATAATT-
1 TTATTAAATATAATATAATTA
* * * *
34103 TAATCATATTTTAATATAATTA
1 TTATTA-AATATAATATAATTA
*
34125 TTATTAAATATAATTTAAT
1 TTATTAAATATAATATAAT
34144 AAAAAATAAT
Statistics
Matches: 57, Mismatches: 19, Indels: 8
0.68 0.23 0.10
Matches are distributed among these distances:
18 4 0.07
19 4 0.07
20 7 0.12
21 38 0.67
22 4 0.07
ACGTcount: A:0.51, C:0.01, G:0.02, T:0.46
Consensus pattern (21 bp):
TTATTAAATATAATATAATTA
Found at i:34242 original size:32 final size:29
Alignment explanation
Indices: 34206--34268 Score: 90
Period size: 32 Copynumber: 2.1 Consensus size: 29
34196 TAAATTGTAT
*
34206 TAAAATATTTTATTTTAAATTATATTTTGAAA
1 TAAAATATTTTATATT-AA-TATATTTT-AAA
34238 TAAAATATTTTATATTAATATATTTTAAA
1 TAAAATATTTTATATTAATATATTTTAAA
34267 TA
1 TA
34269 TTTTATTTTT
Statistics
Matches: 30, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
29 5 0.17
30 8 0.27
31 2 0.07
32 15 0.50
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.52
Consensus pattern (29 bp):
TAAAATATTTTATATTAATATATTTTAAA
Found at i:34260 original size:15 final size:15
Alignment explanation
Indices: 34203--34264 Score: 63
Period size: 15 Copynumber: 4.0 Consensus size: 15
34193 TATTAAATTG
34203 TATTAAAATATTTTA
1 TATTAAAATATTTTA
*
34218 TTTTAAATTATATTTTGA
1 TATTAAA--ATATTTT-A
*
34236 -AATAAAATATTTTA
1 TATTAAAATATTTTA
*
34250 TATTAATATATTTTA
1 TATTAAAATATTTTA
34265 AATATTTTAT
Statistics
Matches: 38, Mismatches: 5, Indels: 8
0.75 0.10 0.16
Matches are distributed among these distances:
14 1 0.03
15 25 0.66
17 11 0.29
18 1 0.03
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.55
Consensus pattern (15 bp):
TATTAAAATATTTTA
Found at i:34279 original size:30 final size:28
Alignment explanation
Indices: 34188--34283 Score: 88
Period size: 30 Copynumber: 3.3 Consensus size: 28
34178 ATATAATTAT
34188 TTTTATATTAA-ATTGTATTAAAATATTTTA
1 TTTTATATTAATATT-T-TT-AAATATTTTA
* * ***
34218 TTTTAAATT-ATATTTTGAAATAAAATA
1 TTTTATATTAATATTTTTAAATATTTTA
34245 TTTTATATTAATATATTTTAAATATTTTA
1 TTTTATATTAATAT-TTTTAAATATTTTA
34274 TTTTTATATT
1 -TTTTATATT
34284 TTCTGAGTAC
Statistics
Matches: 52, Mismatches: 10, Indels: 8
0.74 0.14 0.11
Matches are distributed among these distances:
27 15 0.29
28 5 0.10
29 12 0.23
30 20 0.38
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.58
Consensus pattern (28 bp):
TTTTATATTAATATTTTTAAATATTTTA
Found at i:34774 original size:3 final size:3
Alignment explanation
Indices: 34766--34833 Score: 136
Period size: 3 Copynumber: 22.7 Consensus size: 3
34756 TTCTATCATA
34766 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
34814 AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AA
34834 ACTTTTGGTC
Statistics
Matches: 65, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 65 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:39327 original size:13 final size:12
Alignment explanation
Indices: 39306--39339 Score: 52
Period size: 12 Copynumber: 2.8 Consensus size: 12
39296 TTCTTTGCTT
39306 CATTTAAAACCA
1 CATTTAAAACCA
39318 CATATTAAAA-CA
1 CAT-TTAAAACCA
39330 CATTTAAAAC
1 CATTTAAAAC
39340 ATCAGAAAGG
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
11 6 0.30
12 8 0.40
13 6 0.30
ACGTcount: A:0.53, C:0.21, G:0.00, T:0.26
Consensus pattern (12 bp):
CATTTAAAACCA
Found at i:39338 original size:11 final size:11
Alignment explanation
Indices: 39306--39340 Score: 52
Period size: 11 Copynumber: 3.0 Consensus size: 11
39296 TTCTTTGCTT
39306 CATTTAAAACCA
1 CATTTAAAA-CA
39318 CATATTAAAACA
1 CAT-TTAAAACA
39330 CATTTAAAACA
1 CATTTAAAACA
39341 TCAGAAAGGA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
11 8 0.36
12 8 0.36
13 6 0.27
ACGTcount: A:0.54, C:0.20, G:0.00, T:0.26
Consensus pattern (11 bp):
CATTTAAAACA
Found at i:43971 original size:20 final size:20
Alignment explanation
Indices: 43946--43984 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
43936 TAATCATTCT
*
43946 ATTTTAGTTTTAAGATATAC
1 ATTTTAGTTTTAAAATATAC
*
43966 ATTTTATTTTTAAAATATA
1 ATTTTAGTTTTAAAATATA
43985 ATTATATGTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.38, C:0.03, G:0.05, T:0.54
Consensus pattern (20 bp):
ATTTTAGTTTTAAAATATAC
Found at i:45933 original size:19 final size:19
Alignment explanation
Indices: 45911--45955 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
45901 TTTTATTAGG
45911 ATTTAATATTTAAGATAT-T
1 ATTTAATATTTAA-ATATGT
* *
45930 ATTTATTATTTAAATTTGT
1 ATTTAATATTTAAATATGT
45949 ATTTAAT
1 ATTTAAT
45956 TCATTTTTAT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
18 3 0.14
19 19 0.86
ACGTcount: A:0.38, C:0.00, G:0.04, T:0.58
Consensus pattern (19 bp):
ATTTAATATTTAAATATGT
Found at i:52481 original size:10 final size:10
Alignment explanation
Indices: 52468--52515 Score: 62
Period size: 10 Copynumber: 4.8 Consensus size: 10
52458 TCAAAGTGTT
52468 TTAATATATA
1 TTAATATATA
52478 TTAATATAT-
1 TTAATATATA
*
52487 TTAATATTTA
1 TTAATATATA
*
52497 TTTATTATATA
1 -TTAATATATA
52508 TTAATATA
1 TTAATATA
52516 CTTATTAATT
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
9 8 0.25
10 16 0.50
11 8 0.25
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (10 bp):
TTAATATATA
Found at i:52491 original size:19 final size:20
Alignment explanation
Indices: 52467--52515 Score: 64
Period size: 19 Copynumber: 2.5 Consensus size: 20
52457 TTCAAAGTGT
52467 TTTAATATATA-TTAATATA
1 TTTAATATATATTTAATATA
* *
52486 TTTAATATTTATTTATTATA
1 TTTAATATATATTTAATATA
52506 TATTAATATA
1 T-TTAATATA
52516 CTTATTAATT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
19 10 0.40
20 8 0.32
21 7 0.28
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (20 bp):
TTTAATATATATTTAATATA
Found at i:52522 original size:19 final size:19
Alignment explanation
Indices: 52467--52522 Score: 53
Period size: 19 Copynumber: 2.8 Consensus size: 19
52457 TTCAAAGTGT
52467 TTTAATATA-TATTAATATA
1 TTTAATATATTATT-ATATA
52486 TTTAATAT-TTATTTATTATA
1 TTTAATATATTA-TTA-TATA
52506 TATTAATATACTTATTA
1 T-TTAATATA-TTATTA
52523 ATTGCTATTT
Statistics
Matches: 31, Mismatches: 0, Indels: 9
0.77 0.00 0.22
Matches are distributed among these distances:
19 11 0.35
20 7 0.23
21 7 0.23
22 3 0.10
23 3 0.10
ACGTcount: A:0.41, C:0.02, G:0.00, T:0.57
Consensus pattern (19 bp):
TTTAATATATTATTATATA
Found at i:52532 original size:33 final size:30
Alignment explanation
Indices: 52467--52537 Score: 88
Period size: 30 Copynumber: 2.3 Consensus size: 30
52457 TTCAAAGTGT
* *
52467 TTTAATATATATTAATATATTTAATATTTA
1 TTTATTATATATTAATATACTTAATATTTA
*
52497 TTTATTATATATTAATATACTTATTAATTGCTA
1 TTTATTATATATTAATATACTTAAT-ATT--TA
52530 TTTATTAT
1 TTTATTAT
52538 TACCTACGAA
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
30 22 0.63
31 3 0.09
33 10 0.29
ACGTcount: A:0.38, C:0.03, G:0.01, T:0.58
Consensus pattern (30 bp):
TTTATTATATATTAATATACTTAATATTTA
Found at i:53645 original size:29 final size:28
Alignment explanation
Indices: 53592--53723 Score: 122
Period size: 29 Copynumber: 4.5 Consensus size: 28
53582 CGAACTTCTC
53592 CAAAATTACATTTTGACCCTTAAAATTTT
1 CAAAATTACATTTTGACCC-TAAAATTTT
* *
53621 CAAACATTACATTTTTACCCTAAAACTTGCT
1 CAAA-ATTACATTTTGACCCTAAAA-TT-TT
* * *
53652 AAAAATTACATTTTGACACC-AAACTTTA
1 CAAAATTACATTTTGAC-CCTAAAATTTT
* *
53680 CAAAAATTACATTTTAACCCTAAACTTTT
1 C-AAAATTACATTTTGACCCTAAAATTTT
*
53709 CCAAAATTATATTTT
1 -CAAAATTACATTTT
53724 TCCCCGAACT
Statistics
Matches: 85, Mismatches: 11, Indels: 14
0.77 0.10 0.13
Matches are distributed among these distances:
28 2 0.02
29 45 0.53
30 32 0.38
31 6 0.07
ACGTcount: A:0.40, C:0.20, G:0.02, T:0.38
Consensus pattern (28 bp):
CAAAATTACATTTTGACCCTAAAATTTT
Found at i:55285 original size:3 final size:3
Alignment explanation
Indices: 55277--55308 Score: 57
Period size: 3 Copynumber: 11.0 Consensus size: 3
55267 AGGTAACCCA
55277 ATT ATT ATT ATT ATT ATT ATT ATT -TT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
55309 TATTTGTCTA
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
2 2 0.07
3 26 0.93
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
ATT
Found at i:55311 original size:12 final size:11
Alignment explanation
Indices: 55278--55313 Score: 54
Period size: 12 Copynumber: 3.1 Consensus size: 11
55268 GGTAACCCAA
55278 TTATTATTATT
1 TTATTATTATT
55289 ATTATTATTATT
1 -TTATTATTATT
55301 TTATTATTTATT
1 TTATTA-TTATT
55313 T
1 T
55314 GTCTAGAAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
11 6 0.26
12 17 0.74
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (11 bp):
TTATTATTATT
Found at i:59896 original size:24 final size:24
Alignment explanation
Indices: 59864--59913 Score: 100
Period size: 24 Copynumber: 2.1 Consensus size: 24
59854 GAATATCCAC
59864 TATCGAAATACCAAATATGATCTA
1 TATCGAAATACCAAATATGATCTA
59888 TATCGAAATACCAAATATGATCTA
1 TATCGAAATACCAAATATGATCTA
59912 TA
1 TA
59914 GAATTCTTCA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.46, C:0.16, G:0.08, T:0.30
Consensus pattern (24 bp):
TATCGAAATACCAAATATGATCTA
Found at i:61113 original size:13 final size:14
Alignment explanation
Indices: 61092--61120 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
61082 CTCAACGTAG
61092 AAATCAATGTATGA
1 AAATCAATGTATGA
61106 AAAT-AATGTATGA
1 AAATCAATGTATGA
61119 AA
1 AA
61121 TTCTCTACTT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 11 0.73
14 4 0.27
ACGTcount: A:0.55, C:0.03, G:0.14, T:0.28
Consensus pattern (14 bp):
AAATCAATGTATGA
Found at i:66989 original size:71 final size:71
Alignment explanation
Indices: 66873--67013 Score: 185
Period size: 71 Copynumber: 2.0 Consensus size: 71
66863 CGAATCGGTA
* *
66873 AAACCATCATTTCTCAATTTAATTGATTTTATCTAATTCAAATAAATAAATTATTAAAAGTTTAA
1 AAACCATCATTTCTCAATTTAACTGATTTTATCTAATTCAAATAAATAAATTATTAAAAATTTAA
66938 AAATAC
66 AAATAC
* * * ** * *
66944 AAACCATCAATTT-TTAATTTAACTGGTTTTATTTGGTTCAAATAAATAAATTGTTAAAAATTTT
1 AAACCATC-ATTTCTCAATTTAACTGATTTTATCTAATTCAAATAAATAAATTATTAAAAATTTA
67008 AAAATA
65 AAAATA
67014 AAAAAAATCG
Statistics
Matches: 60, Mismatches: 9, Indels: 2
0.85 0.13 0.03
Matches are distributed among these distances:
71 56 0.93
72 4 0.07
ACGTcount: A:0.45, C:0.09, G:0.05, T:0.41
Consensus pattern (71 bp):
AAACCATCATTTCTCAATTTAACTGATTTTATCTAATTCAAATAAATAAATTATTAAAAATTTAA
AAATAC
Found at i:70213 original size:31 final size:30
Alignment explanation
Indices: 70134--70213 Score: 72
Period size: 31 Copynumber: 2.6 Consensus size: 30
70124 GGACCCCAAA
* *
70134 AAGTTTAAGTATCAACTTAAAAAAAAGTGTC
1 AAGTTT-AGTATCAAATTAAAAAAAAGTATC
* * *
70165 ATGTTTAGGTA-CTAAATTAAGAAAAATTATC
1 AAGTTTA-GTATC-AAATTAAAAAAAAGTATC
70196 AAGTTTGAGTATCAAATT
1 AAGTTT-AGTATCAAATT
70214 GGACCAAAAA
Statistics
Matches: 39, Mismatches: 6, Indels: 8
0.74 0.11 0.15
Matches are distributed among these distances:
30 2 0.05
31 35 0.90
32 2 0.05
ACGTcount: A:0.45, C:0.07, G:0.14, T:0.34
Consensus pattern (30 bp):
AAGTTTAGTATCAAATTAAAAAAAAGTATC
Found at i:71692 original size:27 final size:27
Alignment explanation
Indices: 71642--71700 Score: 73
Period size: 27 Copynumber: 2.2 Consensus size: 27
71632 ATTATAATAG
*
71642 CTAAGTCCTAAAAATCAGAAACTAAAC
1 CTAATTCCTAAAAATCAGAAACTAAAC
* * * *
71669 CTAATTCCTAATAATTAGATACTAAAT
1 CTAATTCCTAAAAATCAGAAACTAAAC
71696 CTAAT
1 CTAAT
71701 CTTCTAAATA
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.47, C:0.19, G:0.05, T:0.29
Consensus pattern (27 bp):
CTAATTCCTAAAAATCAGAAACTAAAC
Found at i:74503 original size:9 final size:10
Alignment explanation
Indices: 74488--74514 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
74478 ATTAAAAGGT
74488 TTTTTTTTTA
1 TTTTTTTTTA
74498 TTTTTTTTTA
1 TTTTTTTTTA
74508 TTTTTTT
1 TTTTTTT
74515 GGATTTTTTG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.07, C:0.00, G:0.00, T:0.93
Consensus pattern (10 bp):
TTTTTTTTTA
Found at i:75230 original size:209 final size:207
Alignment explanation
Indices: 74868--75264 Score: 562
Period size: 209 Copynumber: 1.9 Consensus size: 207
74858 TTTGTTTCAC
* * * * **
74868 CCCACTTCTTTGTATCTTATCAGGAAGATGGGGTTGGAAGTTTCATTCGTATTGAGCTTCGCCTC
1 CCCACTTCTCTGTATCTCATCAGAAAGATGGGGTTGGAAGTTTCACTCACATTGAGCTTCGCCTC
* * * *
74933 ATTGATTTGGCCTACTTCTCTGTATCTCATCAGGAAGATGACTGCCTCATTATTTCAATCCATTT
66 ATCGATTTGGCCTACTTCTCTATATCTCATCAAGAAGATGACT-CCTCATTATTTCAATCCACTT
* * * *
74998 CTCTGTATCTCATCAGGAAGACGGATTTGGTCCATTTTTTTGTATCTTATCAAGAAGATGACTGC
130 CTCTATATCTCATCAGAAAGACGGATTTGGTCCACTTTTTTGTATCTCATCAAGAAGATGACTGC
75063 TTCATTGCTTTGA
195 TTCATTGCTTTGA
* *
75076 CCCACTTCTCTGTATCTCATCAGAAAGATGGGGGTTTGAAGTTTCACTCACATTGAGCTTCGCTT
1 CCCACTTCTCTGTATCTCATCAGAAAGAT-GGGGTTGGAAGTTTCACTCACATTGAGCTTCGCCT
* * *
75141 CATCGATTTGGTCTACTTCTCTATATCTCATCAAGAAGATGA-TCATCTCATTATTTTAATTCAC
65 CATCGATTTGGCCTACTTCTCTATATCTCATCAAGAAGATGACTC--CTCATTATTTCAATCCAC
* *
75205 TTCTCTATATCTCATCAGAAAGACGGATTTGGTTCACTTTTTTGTATCTCATCAGGAAGA
128 TTCTCTATATCTCATCAGAAAGACGGATTTGGTCCACTTTTTTGTATCTCATCAAGAAGA
75265 CGGATTTGGT
Statistics
Matches: 165, Mismatches: 21, Indels: 5
0.86 0.11 0.03
Matches are distributed among these distances:
207 1 0.01
208 27 0.16
209 137 0.83
ACGTcount: A:0.23, C:0.21, G:0.17, T:0.38
Consensus pattern (207 bp):
CCCACTTCTCTGTATCTCATCAGAAAGATGGGGTTGGAAGTTTCACTCACATTGAGCTTCGCCTC
ATCGATTTGGCCTACTTCTCTATATCTCATCAAGAAGATGACTCCTCATTATTTCAATCCACTTC
TCTATATCTCATCAGAAAGACGGATTTGGTCCACTTTTTTGTATCTCATCAAGAAGATGACTGCT
TCATTGCTTTGA
Found at i:75297 original size:37 final size:37
Alignment explanation
Indices: 75200--75300 Score: 166
Period size: 37 Copynumber: 2.7 Consensus size: 37
75190 ATTATTTTAA
*
75200 TTCACTTCTCTATATCTCATCAGAAAGACGGATTTGG
1 TTCACTTCTCTATATCTCATCAGGAAGACGGATTTGG
* * *
75237 TTCACTTTTTTGTATCTCATCAGGAAGACGGATTTGG
1 TTCACTTCTCTATATCTCATCAGGAAGACGGATTTGG
75274 TTCACTTCTCTATATCTCATCAGGAAG
1 TTCACTTCTCTATATCTCATCAGGAAG
75301 TTGACCGTTT
Statistics
Matches: 57, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
37 57 1.00
ACGTcount: A:0.25, C:0.21, G:0.17, T:0.38
Consensus pattern (37 bp):
TTCACTTCTCTATATCTCATCAGGAAGACGGATTTGG
Found at i:75438 original size:246 final size:246
Alignment explanation
Indices: 74991--75510 Score: 729
Period size: 246 Copynumber: 2.1 Consensus size: 246
74981 ATTATTTCAA
* * * * * *
74991 TCCATTTCTCTGTATCTCATCAGGAAGACGGATTTGGTCCATTTTTTTGTATCTTATCAAGAAGA
1 TCCACTTCTCTGTATCTCATCAGGAAGACGGATTTGGTCCACTTCTCTATATCTCATCAAGAAGA
* * *
75056 TGACTGCTTCATTGCTTTGACCCACTTCTCTGTATCTCATCAGAAAGATGGGGGTTTGAAGTTTC
66 TGACCGCTTAAATGCTTTGACCCACTTCTCTGTATCTCATCAGAAAGATGGGGGTTTGAAGTTTC
* *
75121 ACTCACATTGAGCTTCGCTTCATCGATTTGGTCTACTTCTCTATATCTCATCAAGAAGATGATCA
131 ACTCACATTGAGCTTCGCTTCATCGATTTGATATACTTCTCTATATCTCATCAAGAAGATGATCA
*
75186 TCTCATTATTTTAATTCACTTCTCTATATCTCATC-AGAAAGACGGATTTGG
196 TCTCATTATTTTAATCCACTTCTCTATATCTCATCAAG-AAGACGGATTTGG
* * * * * *
75237 TTCACTTTTTTGTATCTCATCAGGAAGACGGATTTGGTTCACTTCTCTATATCTCATCAGGAAGT
1 TCCACTTCTCTGTATCTCATCAGGAAGACGGATTTGGTCCACTTCTCTATATCTCATCAAGAAGA
* *
75302 TGACCGTTTAAATGCTTTGACCCACTTCTCTGTATCTCATCAGGAAGATGGGGGTTTGAAGTTTC
66 TGACCGCTTAAATGCTTTGACCCACTTCTCTGTATCTCATCAGAAAGATGGGGGTTTGAAGTTTC
* * * * * *
75367 ACTCACATTGTGTTTCGCTTCATCGATTTGATATACTTCTTTGTATCTCATTAGGAAGATGA-CT
131 ACTCACATTGAGCTTCGCTTCATCGATTTGATATACTTCTCTATATCTCATCAAGAAGATGATC-
* * * *
75431 GTCTCATTGTTTTAATCCACTTCTCTGTATCTTATCAAGAAGACGGATTTGG
195 ATCTCATTATTTTAATCCACTTCTCTATATCTCATCAAGAAGACGGATTTGG
*
75483 TCCACTTCTCTGTATCTCATCAAGAAGA
1 TCCACTTCTCTGTATCTCATCAGGAAGA
75511 TGACTGCTTT
Statistics
Matches: 238, Mismatches: 34, Indels: 4
0.86 0.12 0.01
Matches are distributed among these distances:
245 1 0.00
246 235 0.99
247 2 0.01
ACGTcount: A:0.24, C:0.21, G:0.17, T:0.38
Consensus pattern (246 bp):
TCCACTTCTCTGTATCTCATCAGGAAGACGGATTTGGTCCACTTCTCTATATCTCATCAAGAAGA
TGACCGCTTAAATGCTTTGACCCACTTCTCTGTATCTCATCAGAAAGATGGGGGTTTGAAGTTTC
ACTCACATTGAGCTTCGCTTCATCGATTTGATATACTTCTCTATATCTCATCAAGAAGATGATCA
TCTCATTATTTTAATCCACTTCTCTATATCTCATCAAGAAGACGGATTTGG
Found at i:75689 original size:208 final size:206
Alignment explanation
Indices: 75247--75928 Score: 810
Period size: 208 Copynumber: 3.3 Consensus size: 206
75237 TTCACTTTTT
* * * * *
75247 TGTATCTCATCAGGAAGACGGATTTGGTTCACTTCTCTATATCTCATCAGGAAGTTGACCGTTTA
1 TGTATCTCATCAAGAAGACGGATTTGGTCCACTTCTCTGTATCTCATCAAGAAGATGACCGTTT-
* * * *
75312 AATGCTTTGACCCACTTCTCTGTATCTCATCAGGAAGATGGGGGTTTGAAGTT-TCACTCACATT
65 ATTGCTTTGACCCACTTCTCTGTATCTCATCAAGAAGAT-GGGGTTTGAA-TTCTCATTCATATT
* * * ** * * * **
75376 GTGTTTCGCTTCATCGATTTGATATACTTCTTTGTATCTCATTAGGAAGATGACTGTCTCATTGT
128 GAGCTTCGCTTTATTAATTTGATCTACTTCTCTGTATCTCATCAGGAAGATGACCATCTCATTG-
*
75441 TTTAATCCACTTCTC
192 TTTAATCCATTTCTC
* *
75456 TGTATCTTATCAAGAAGACGGATTTGGTCCACTTCTCTGTATCTCATCAAGAAGATGACTGCTTT
1 TGTATCTCATCAAGAAGACGGATTTGGTCCACTTCTCTGTATCTCATCAAGAAGATGACCG-TTT
* * * * * *
75521 ATTACTTTGACTCACTTCTCTGTATCTTATCAAGAAGATGAGATTTGAATTCTCATTCATATTAA
65 ATTGCTTTGACCCACTTCTCTGTATCTCATCAAGAAGATGGGGTTTGAATTCTCATTCATATTGA
* * * *
75586 GCTTCGCTTTGTTAATTTGGTCTACTTCTCTATATCTCATCAGGAAGATGACCACCTCATTGTTT
130 GCTTCGCTTTATTAATTTGATCTACTTCTCTGTATCTCATCAGGAAGATGACCATCTCATTGTTT
75651 CAATCCATTTCTC
195 -AATCCATTTCTC
* * * * * * * *
75664 TGTATCTCATTAGGAAGTCGGATTTGGTCCACTTTTTTGTATCTCATTAGGAAGATGACCATTTT
1 TGTATCTCATCAAGAAGACGGATTTGGTCCACTTCTCTGTATCTCATCAAGAAGATGACC-GTTT
* *
75729 ATTGCTTTGACCCACTTCTCTGTATCTCATCAAGAAGATGGGGTTTGAAGTCTCATTCGTATTGA
65 ATTGCTTTGACCCACTTCTCTGTATCTCATCAAGAAGATGGGGTTTGAATTCTCATTCATATTGA
** * * * *
75794 GCTTCATTTTATTATTTTGATCTATTTCTCTGTATCTCATCAGGAAGATGACCATCTTATTATTG
130 GCTTCGCTTTATTAATTTGATCTACTTCTCTGTATCTCATCAGGAAGATGACCATCTCATTGTT-
75859 TAATCCACTTT-TC
194 TAATCCA-TTTCTC
* * *
75872 TGTATCTTATCAAGAAGACAGATTTGGTTCACTTCTCTGTATCTCATCAAGAAGATG
1 TGTATCTCATCAAGAAGACGGATTTGGTCCACTTCTCTGTATCTCATCAAGAAGATG
75929 GATTTGGTTT
Statistics
Matches: 397, Mismatches: 70, Indels: 13
0.83 0.15 0.03
Matches are distributed among these distances:
207 5 0.01
208 297 0.75
209 92 0.23
210 3 0.01
ACGTcount: A:0.24, C:0.20, G:0.16, T:0.40
Consensus pattern (206 bp):
TGTATCTCATCAAGAAGACGGATTTGGTCCACTTCTCTGTATCTCATCAAGAAGATGACCGTTTA
TTGCTTTGACCCACTTCTCTGTATCTCATCAAGAAGATGGGGTTTGAATTCTCATTCATATTGAG
CTTCGCTTTATTAATTTGATCTACTTCTCTGTATCTCATCAGGAAGATGACCATCTCATTGTTTA
ATCCATTTCTC
Found at i:75748 original size:85 final size:85
Alignment explanation
Indices: 75600--75758 Score: 203
Period size: 85 Copynumber: 1.9 Consensus size: 85
75590 CGCTTTGTTA
* * *
75600 ATTTGGTCTACTTCTCTATATCTCATCAGGAAGATGACCACCTCATTGTTTCAATCCATTTCTCT
1 ATTTGGTCCACTTCTCTATATCTCATCAGGAAGATGACCACCTCATTGTTTCAACCCACTTCTCT
75665 GTATCTCATTAGGAAGTCGG
66 GTATCTCATTAGGAAGTCGG
* * * * ** * *
75685 ATTTGGTCCACTTTTTTGTATCTCATTAGGAAGATGACCATTTTATTGCTTT-GACCCACTTCTC
1 ATTTGGTCCACTTCTCTATATCTCATCAGGAAGATGACCACCTCATTG-TTTCAACCCACTTCTC
75749 TGTATCTCAT
65 TGTATCTCAT
75759 CAAGAAGATG
Statistics
Matches: 62, Mismatches: 11, Indels: 2
0.83 0.15 0.03
Matches are distributed among these distances:
85 59 0.95
86 3 0.05
ACGTcount: A:0.22, C:0.23, G:0.14, T:0.41
Consensus pattern (85 bp):
ATTTGGTCCACTTCTCTATATCTCATCAGGAAGATGACCACCTCATTGTTTCAACCCACTTCTCT
GTATCTCATTAGGAAGTCGG
Found at i:75914 original size:37 final size:37
Alignment explanation
Indices: 75864--75962 Score: 135
Period size: 37 Copynumber: 2.7 Consensus size: 37
75854 TATTGTAATC
*
75864 CACTTTTCTGTATCTTATCAAGAAGACAGATTTGGTT
1 CACTTCTCTGTATCTTATCAAGAAGACAGATTTGGTT
* **
75901 CACTTCTCTGTATCTCATCAAGAAGATGGATTTGGTT
1 CACTTCTCTGTATCTTATCAAGAAGACAGATTTGGTT
* * *
75938 TACTTCTCTTTATCTTATCAGGAAG
1 CACTTCTCTGTATCTTATCAAGAAG
75963 TTGACCGTTT
Statistics
Matches: 54, Mismatches: 8, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
37 54 1.00
ACGTcount: A:0.25, C:0.18, G:0.16, T:0.40
Consensus pattern (37 bp):
CACTTCTCTGTATCTTATCAAGAAGACAGATTTGGTT
Found at i:76048 original size:454 final size:453
Alignment explanation
Indices: 75448--76300 Score: 1192
Period size: 454 Copynumber: 1.9 Consensus size: 453
75438 TGTTTTAATC
*
75448 CACTTCTCTGTATCTTATCAAGAAGACGGATTTGGTCCACTTCTCTGTATCTCATCAAGAAGATG
1 CACTTCTCTGTATCTCATCAAGAAGACGGATTTGGTCCACTTCTCTGTATCTCATCAAGAAGATG
* * * *
75513 ACTGCTTTATTACTTTGACTCACTTCTCTGTATCTTATCAAGAAGATGAGATTTGAATTCTCATT
66 ACCGCTTTATTACTTTGACCCACTTCTCTGTATCTCATCAAGAAGATGAGATTTGAATTCTCACT
* * ** *
75578 CATATTAAGCTTCGCTTTGT-TAATTTGGTCTACTTCTCTATATCTCATCAGGAAGATGACCACC
131 CACATTAAGATTCGCTTCATCT-ATTTGGTCTACTTCTCTATATCTCATCAAGAAGATGACCACC
* * * * * * *
75642 TCATTGTTTCAATCCATTTCTCTGTATCTCATTAGGAAG-TCGGATTTGGTCCACTTTTTTGTAT
195 TCATTGTTTCAATCCACTTCTCTGTATCTCATCAAGAAGAT-GAATTTGATCCACTTCTCTGTAT
* * * *
75706 CTCATTAGGAAGATGACCATTTTATTGCTTTGACCCACTTCTCTGTATCTCATCAAGAAGATGGG
259 CTCATCAAGAAGATGACCATATTATTGCTTTAACCCACTTCTCTGTATCTCATCAAGAAGATGGG
* * *
75771 GTTTGAAGTCTCATTCGTATTGAGCTTCATTTTATT-ATTTTGATCTATTTCTCTGTATCTCATC
324 GTTTGAAGTCTCATTCGTATTGAGCTTCACTTTATTGA-TTTGATCTACTTCTCTATATCTCATC
75835 AGGAAGATGACCATCTTATTATTGTAATCCACTTTTCTGTATCTTATCAAGAAGACAGATTTGGT
388 AGGAAGATGACCATCTTATTATTGTAATCCACTTTTCTGTATCTTATCAAGAAGACAGATTTGGT
75900 T
453 T
* ** * * * *
75901 CACTTCTCTGTATCTCATCAAGAAGATGGATTTGGTTTACTTCTCTTTATCTTATCAGGAAGTTG
1 CACTTCTCTGTATCTCATCAAGAAGACGGATTTGGTCCACTTCTCTGTATCTCATCAAGAAGATG
* * *
75966 ACCGTTTTATTGCTTTGACCCACTTCTCTGTATCTCATCAAGAAGATGGAGGTTTGAAGTT-TCA
66 ACCGCTTTATTACTTTGACCCACTTCTCTGTATCTCATCAAGAAGAT-GAGATTTGAA-TTCTCA
* * **
76030 CTCACATTGAGATTCGCTTCATCTATTTGGTCTACTTCTCTGTATCTCATCAAGAAGATGACCGT
129 CTCACATTAAGATTCGCTTCATCTATTTGGTCTACTTCTCTATATCTCATCAAGAAGATGACCAC
* * *
76095 CTCATTGTTTTAGTCCACTTCTCTGTATCTTATCAAGAAGATGAATTTGATCCACTTCTCTGTAT
194 CTCATTGTTTCAATCCACTTCTCTGTATCTCATCAAGAAGATGAATTTGATCCACTTCTCTGTAT
* * * *
76160 CTCATCAAGAAGATGACCGTATTATTGCTTTAACTCACTTCTTTGTATCTTATCAAGAAGATGGG
259 CTCATCAAGAAGATGACCATATTATTGCTTTAACCCACTTCTCTGTATCTCATCAAGAAGATGGG
* * * *
76225 GTTTGAATTCTCATTCGTATTGAGCTTCGCTTTGTTGATTTGGTCTACTTCTCTATATCTCATCA
324 GTTTGAAGTCTCATTCGTATTGAGCTTCACTTTATTGATTTGATCTACTTCTCTATATCTCATCA
76290 GGAAGATGACC
389 GGAAGATGACC
76301 GCCTCATTTT
Statistics
Matches: 346, Mismatches: 49, Indels: 9
0.86 0.12 0.02
Matches are distributed among these distances:
453 99 0.29
454 242 0.70
455 5 0.01
ACGTcount: A:0.24, C:0.20, G:0.16, T:0.40
Consensus pattern (453 bp):
CACTTCTCTGTATCTCATCAAGAAGACGGATTTGGTCCACTTCTCTGTATCTCATCAAGAAGATG
ACCGCTTTATTACTTTGACCCACTTCTCTGTATCTCATCAAGAAGATGAGATTTGAATTCTCACT
CACATTAAGATTCGCTTCATCTATTTGGTCTACTTCTCTATATCTCATCAAGAAGATGACCACCT
CATTGTTTCAATCCACTTCTCTGTATCTCATCAAGAAGATGAATTTGATCCACTTCTCTGTATCT
CATCAAGAAGATGACCATATTATTGCTTTAACCCACTTCTCTGTATCTCATCAAGAAGATGGGGT
TTGAAGTCTCATTCGTATTGAGCTTCACTTTATTGATTTGATCTACTTCTCTATATCTCATCAGG
AAGATGACCATCTTATTATTGTAATCCACTTTTCTGTATCTTATCAAGAAGACAGATTTGGTT
Found at i:76134 original size:48 final size:45
Alignment explanation
Indices: 76063--76222 Score: 156
Period size: 48 Copynumber: 3.6 Consensus size: 45
76053 TATTTGGTCT
76063 ACTTCTCTGTATCTCATCAAGAAGATGACCGTCTCATTGTTTTAGTCC
1 ACTTCTCTGTATCTCATCAAGAAGATGACCGT-T-ATTGTTTTA-TCC
* *
76111 ACTTCTCTGTATCTTATCAAGAAGATGA-----A---TTTGATCC
1 ACTTCTCTGTATCTCATCAAGAAGATGACCGTTATTGTTTTATCC
* *
76148 ACTTCTCTGTATCTCATCAAGAAGATGACCGTATTATTGCTTTAACTC
1 ACTTCTCTGTATCTCATCAAGAAGATGACCG--TTATTGTTTTATC-C
* *
76196 ACTTCTTTGTATCTTATCAAGAAGATG
1 ACTTCTCTGTATCTCATCAAGAAGATG
76223 GGGTTTGAAT
Statistics
Matches: 93, Mismatches: 8, Indels: 22
0.76 0.07 0.18
Matches are distributed among these distances:
37 30 0.32
38 4 0.04
41 1 0.01
44 1 0.01
47 4 0.04
48 53 0.57
ACGTcount: A:0.27, C:0.21, G:0.14, T:0.38
Consensus pattern (45 bp):
ACTTCTCTGTATCTCATCAAGAAGATGACCGTTATTGTTTTATCC
Found at i:76134 original size:662 final size:658
Alignment explanation
Indices: 74870--77242 Score: 2758
Period size: 662 Copynumber: 3.6 Consensus size: 658
74860 TGTTTCACCC
* * * * * * *
74870 CACTTCTTTGTATCTTATCAGGAAGATGGGGTTGGAAGTTTCATTCGTATTGAGCTTCGCCTCAT
1 CACTTCTCTGTATCTTATCAAGAAGATGAGGTTTGAAGTTTCATTCATATTGAGCTTCGCTTTAT
* * * *
74935 TGATTTGGCCTACTTCTCTGTATCTCATCAGGAAGATGACTGCCTCATTATTTCAATCCATTTCT
66 TGATTTGGTCTACTTCTCTATATCTCATCAGGAAGATGACCGCCTCATTGTTTCAATCCATTTCT
* * * * * * *
75000 CTGTATCTCATCAGGAAGACGGATTTGGTCCATTTTTTTGTATCTTATCAAGAAGATGACTGCTT
131 CTGTATCTCATTAGGAAGACGAATTTGGTCCACTTTTTTGTATCTCATCAGGAAGATGACCGTTT
* * * **
75065 CATTGCTTTGACCCACTTCTCTGTATCTCATC-AGAAAGATGGGGGTTTGAAGTTTCACTCACAT
196 TATTGCTTTGACCCACTTCTCTGTATCTCATCAAG-AAGAT-GGGGTTTGAAGTCTCATTCGTAT
* * *
75129 TGAGCTTCGCTTCATCGATTTGGTCTACTTCTCTATATCTCATCAAGAAGATGATCATCTCATTA
259 TGAGCTTCGCTTCAT-GATTTGATCTACTTCTCTGTATCTCATCAAGAAGATGACCATCTCATTA
* * *
75194 TTTTAATTCACTTCTCTATATCTCATC-AGAAAGACGGATTTGGTTCACTTTTTTGTATCTCATC
323 TTTTAATCCACTTCTCTATATCTCATCAAG-AAGACGGATTTGGTTCACTTCTCTGTATCTCATC
* * * * *
75258 AGGAAGACGGATTTGGTTCACTTCTCTATATCTCATCAGGAAGTTGACCGTTTAAATGCTTTGAC
387 AAGAAGATGGATTTGGTTTACTTCTCT-TATCTTATCAGGAAGTTGACCGTTTAATTGCTTTGAC
* *
75323 CCACTTCTCTGTATCTCATCAGGAAGATGGGGGTTTGAAGTTTCACTCACATTGTGTTTCGCTTC
451 CCACTTCTCTGTATCTCATCAGGAAGATGGAGGTTTGAAGTTTCACTCACATTGTGATTCGCTTC
* * * *
75388 ATCGATTTGATATACTTCTTTGTATCTCATTAGGAAGATGACTGTCTCATTGTTTTAATCCACTT
516 ATCGATTTGGTCTACTTCTTTGTATCTCATCAGGAAGATGACCGTCTCATTGTTTTAATCCACTT
75453 CTCTGTATCTTATCAAGAAGACGGATTTGGTCCACTTCTCTGTATCTCATCAAGAAGATGACTGC
581 CTCTGTATCTTATCAAGAAGACGGATTTGGTCCACTTCTCTGTATCTCATCAAGAAGATGACTG-
75518 TTTATTACTTTGACT
645 TTTATT-CTTTGACT
* * *
75533 CACTTCTCTGTATCTTATCAAGAAGATGAGATTTGAA-TTCTCATTCATATTAAGCTTCGCTTTG
1 CACTTCTCTGTATCTTATCAAGAAGATGAGGTTTGAAGTT-TCATTCATATTGAGCTTCGCTTTA
* *
75597 TTAATTTGGTCTACTTCTCTATATCTCATCAGGAAGATGACCACCTCATTGTTTCAATCCATTTC
65 TTGATTTGGTCTACTTCTCTATATCTCATCAGGAAGATGACCGCCTCATTGTTTCAATCCATTTC
* * * *
75662 TCTGTATCTCATTAGGAAGTCGGATTTGGTCCACTTTTTTGTATCTCATTAGGAAGATGACCATT
130 TCTGTATCTCATTAGGAAGACGAATTTGGTCCACTTTTTTGTATCTCATCAGGAAGATGACCGTT
75727 TTATTGCTTTGACCCACTTCTCTGTATCTCATCAAGAAGATGGGGTTTGAAGTCTCATTCGTATT
195 TTATTGCTTTGACCCACTTCTCTGTATCTCATCAAGAAGATGGGGTTTGAAGTCTCATTCGTATT
** * * * * *
75792 GAGCTTCATTTTATTATTTTGATCTATTTCTCTGTATCTCATCAGGAAGATGACCATCTTATTAT
260 GAGCTTCGCTTCATGA-TTTGATCTACTTCTCTGTATCTCATCAAGAAGATGACCATCTCATTAT
* * * * *
75857 TGTAATCCACTTTTCTGTATCTTATCAAGAAGACAGATTTGGTTCACTTCTCTGTATCTCATCAA
324 TTTAATCCACTTCTCTATATCTCATCAAGAAGACGGATTTGGTTCACTTCTCTGTATCTCATCAA
*
75922 GAAGATGGATTTGGTTTACTTCTCTTTATCTTATCAGGAAGTTGACCGTTTTATTGCTTTGACCC
389 GAAGATGGATTTGGTTTACTTCTC-TTATCTTATCAGGAAGTTGACCGTTTAATTGCTTTGACCC
* *
75987 ACTTCTCTGTATCTCATCAAGAAGATGGAGGTTTGAAGTTTCACTCACATTGAGATTCGCTTCAT
453 ACTTCTCTGTATCTCATCAGGAAGATGGAGGTTTGAAGTTTCACTCACATTGTGATTCGCTTCAT
* * * *
76052 CTATTTGGTCTACTTCTCTGTATCTCATCAAGAAGATGACCGTCTCATTGTTTTAGTCCACTTCT
518 CGATTTGGTCTACTTCTTTGTATCTCATCAGGAAGATGACCGTCTCATTGTTTTAATCCACTTCT
* * * *
76117 CTGTATCTTATCAAGAAGATGAATTTGATCCACTTCTCTGTATCTCATCAAGAAGATGACCGTAT
583 CTGTATCTTATCAAGAAGACGGATTTGGTCCACTTCTCTGTATCTCATCAAGAAGATGACTGT-T
*
76182 TATTGCTTTAACT
647 TATT-CTTTGACT
* * * *
76195 CACTTCTTTGTATCTTATCAAGAAGATGGGGTTTGAA-TTCTCATTCGTATTGAGCTTCGCTTTG
1 CACTTCTCTGTATCTTATCAAGAAGATGAGGTTTGAAGTT-TCATTCATATTGAGCTTCGCTTTA
*
76259 TTGATTTGGTCTACTTCTCTATATCTCATCAGGAAGATGACCGCCTCATTTTTTCAATCCATTTC
65 TTGATTTGGTCTACTTCTCTATATCTCATCAGGAAGATGACCGCCTCATTGTTTCAATCCATTTC
* *
76324 TCTGTATCTCATTAGGAAGATGAATTTGGTCCACTTTTTTGTATCTAATCAGGAA-ATGACCGTT
130 TCTGTATCTCATTAGGAAGACGAATTTGGTCCACTTTTTTGTATCTCATCAGGAAGATGACCGTT
*
76388 TTATTGCTTTGACCCACTTCTCTGTATCTCATCAGGAAGATGGGGTTTGAAGTCTCATTCGTATT
195 TTATTGCTTTGACCCACTTCTCTGTATCTCATCAAGAAGATGGGGTTTGAAGTCTCATTCGTATT
* ** * *
76453 GAGCTTCGCTTCATTGATTTGATCTATTTCTCTGTATCTCATCAAGAAGATGACCGCCTCTTTGT
260 GAGCTTCGCTTCA-TGATTTGATCTACTTCTCTGTATCTCATCAAGAAGATGACCATCTCATTAT
* * * * * *
76518 TTCAATCCACTTCTCTGTATCTCACCAAGAAGACGGATTTGATCCACTT-TTTCGTATCTCATCA
324 TTTAATCCACTTCTCTATATCTCATCAAGAAGACGGATTTGGTTCACTTCTCT-GTATCTCATCA
* * * * * * *
76582 AGAAGAT-GA--GGGTTTGAAGTT-TC--A-CTTA-CATTG-AGCTT---CGCTTCATCGATTT-
388 AGAAGATGGATTTGGTTT--ACTTCTCTTATCTTATCA-GGAAG-TTGACCGTTTAATTGCTTTG
* * * * * * * * * * * *
76634 ATTCTACTTCTCTATATCTTATCAGGAAGAT-GACCGTCTCATTGTTTTAATCCACTTCTCTGTA
449 A-CCCACTTCTCTGTATCTCATCAGGAAGATGGA-GGTTTGA-AGTTTCACT-CACAT-TGTG-A
* ** * * * * *
76698 TCTC-ATAAGGAAGACGGATTTTGTCCACTTCTTTGTATCTCATCAGGAAGATGACCGCCTCTTT
508 T-TCGCT---TCA-TC-GATTTGGTCTACTTCTTTGTATCTCATCAGGAAGATGACCGTCTCATT
* * * * * * * * *
76762 ATTTCAATCCACTTCTCTATATCTCACCAGGAAGACAGATTTGGTCCACTTCTTTGTATCTCACC
567 GTTTTAATCCACTTCTCTGTATCTTATCAAGAAGACGGATTTGGTCCACTTCTCTGTATCTCATC
* * *
76827 AGGAAGAT---TG---A-T-TTGGTCT
632 AAGAAGATGACTGTTTATTCTTTGACT
* * * *
76846 -ACTTCTCTGTATCTCATCAAGAAGATGAGGGTTTGAAGTTTCACTCACATTGAGCTTTGCTTTA
1 CACTTCTCTGTATCTTATCAAGAAGATGA-GGTTTGAAGTTTCATTCATATTGAGCTTCGCTTTA
* * * * * * * * *
76910 TTGATTTTGTCTACTTCTCTGTATCTAATCAGGAAAATGATCGTCTTATTGTTTTAATCCACTTC
65 TTGATTTGGTCTACTTCTCTATATCTCATCAGGAAGATGACCGCCTCATTGTTTCAATCCATTTC
* * * * *
76975 TCTGTATCTCATAAGGAAGACAAATTTGGTCTACTTCTCTGTATCTCATCAGGAAGATGACC-TC
130 TCTGTATCTCATTAGGAAGACGAATTTGGTCCACTTTTTTGTATCTCATCAGGAAGATGACCGT-
* * * *
77039 TTTATTGCTTGGACCCACTTCTTTGTATCTCATCAGGAAGATGGGGTTTGAAGTTTCATTCGTAT
194 TTTATTGCTTTGACCCACTTCTCTGTATCTCATCAAGAAGATGGGGTTTGAAGTCTCATTCGTAT
** * * *
77104 TGATATTCGCTTTGC-TGATTTGGTCTACTTCTCTGTATCTCATCAAGAAGATAATCATCTCATT
259 TGAGCTTCGC-TT-CATGATTTGATCTACTTCTCTGTATCTCATCAAGAAGATGACCATCTCATT
* *
77168 GTTTTAATCCACTTCTCTATATCTCATCAAGAAGACGAATTTGGTTCACTTCTCTGTATCTCATC
322 ATTTTAATCCACTTCTCTATATCTCATCAAGAAGACGGATTTGGTTCACTTCTCTGTATCTCATC
*
77233 AGGAAGATGG
387 AAGAAGATGG
77243 GGATTTGAAG
Statistics
Matches: 1477, Mismatches: 201, Indels: 74
0.84 0.11 0.04
Matches are distributed among these distances:
650 25 0.02
651 138 0.09
652 220 0.15
653 12 0.01
654 10 0.01
655 9 0.01
656 4 0.00
657 2 0.00
658 6 0.00
659 3 0.00
660 8 0.01
661 285 0.19
662 547 0.37
663 206 0.14
664 2 0.00
ACGTcount: A:0.24, C:0.21, G:0.16, T:0.39
Consensus pattern (658 bp):
CACTTCTCTGTATCTTATCAAGAAGATGAGGTTTGAAGTTTCATTCATATTGAGCTTCGCTTTAT
TGATTTGGTCTACTTCTCTATATCTCATCAGGAAGATGACCGCCTCATTGTTTCAATCCATTTCT
CTGTATCTCATTAGGAAGACGAATTTGGTCCACTTTTTTGTATCTCATCAGGAAGATGACCGTTT
TATTGCTTTGACCCACTTCTCTGTATCTCATCAAGAAGATGGGGTTTGAAGTCTCATTCGTATTG
AGCTTCGCTTCATGATTTGATCTACTTCTCTGTATCTCATCAAGAAGATGACCATCTCATTATTT
TAATCCACTTCTCTATATCTCATCAAGAAGACGGATTTGGTTCACTTCTCTGTATCTCATCAAGA
AGATGGATTTGGTTTACTTCTCTTATCTTATCAGGAAGTTGACCGTTTAATTGCTTTGACCCACT
TCTCTGTATCTCATCAGGAAGATGGAGGTTTGAAGTTTCACTCACATTGTGATTCGCTTCATCGA
TTTGGTCTACTTCTTTGTATCTCATCAGGAAGATGACCGTCTCATTGTTTTAATCCACTTCTCTG
TATCTTATCAAGAAGACGGATTTGGTCCACTTCTCTGTATCTCATCAAGAAGATGACTGTTTATT
CTTTGACT
Found at i:76153 original size:246 final size:245
Alignment explanation
Indices: 75653--76174 Score: 701
Period size: 246 Copynumber: 2.1 Consensus size: 245
75643 CATTGTTTCA
* * * * *
75653 ATCCATTTCTCTGTATCTCATTAGGAAG-TCGGATTTGGTCCACTTTTTTGTATCTCATTAGGAA
1 ATCCACTTCTCTGTATCTCATCAAGAAGAT-GGATTTGGTCCACTTTCTTGTATCTCATCAGGAA
75717 GATGACCATTTTATTGCTTTGACCCACTTCTCTGTATCTCATCAAGAAGATGGGGTTTGAAGTCT
65 GATGACCATTTTATTGCTTTGACCCACTTCTCTGTATCTCATCAAGAAGATGGGGTTTGAAGTCT
* ** * * * * *
75782 CATTCGTATTGAGCTTCATTTTATTATTTTGATCTATTTCTCTGTATCTCATCAGGAAGATGACC
130 CACTCACATTGAGATTCACTTCATTATTTTGATCTACTTCTCTGTATCTCATCAAGAAGATGACC
* *
75847 ATCTTATTATTGTAATCCACTTTTCTGTATCTTATCAAGAAGACAGATTTG
195 ATCTCATTATTGTAATCCACTTCTCTGTATCTTATCAAGAAGACAGATTTG
* * ** *
75898 GTTCACTTCTCTGTATCTCATCAAGAAGATGGATTTGGTTTACTTCTCTT-TATCTTATCAGGAA
1 ATCCACTTCTCTGTATCTCATCAAGAAGATGGATTTGGTCCACTT-TCTTGTATCTCATCAGGAA
* * *
75962 GTTGACCGTTTTATTGCTTTGACCCACTTCTCTGTATCTCATCAAGAAGATGGAGGTTTGAAGTT
65 GATGACCATTTTATTGCTTTGACCCACTTCTCTGTATCTCATCAAGAAGATGG-GGTTTGAAGTC
* *
76027 TCACTCACATTGAGATTCGCTTCATCTA-TTTGGTCTACTTCTCTGTATCTCATCAAGAAGATGA
129 TCACTCACATTGAGATTCACTTCAT-TATTTTGATCTACTTCTCTGTATCTCATCAAGAAGATGA
* * * * *
76091 CCGTCTCATTGTTTTAGTCCACTTCTCTGTATCTTATCAAGAAGA-TGAATTTG
193 CCATCTCATTATTGTAATCCACTTCTCTGTATCTTATCAAGAAGACAG-ATTTG
76144 ATCCACTTCTCTGTATCTCATCAAGAAGATG
1 ATCCACTTCTCTGTATCTCATCAAGAAGATG
76175 ACCGTATTAT
Statistics
Matches: 240, Mismatches: 32, Indels: 9
0.85 0.11 0.03
Matches are distributed among these distances:
245 100 0.42
246 138 0.57
247 2 0.01
ACGTcount: A:0.24, C:0.20, G:0.16, T:0.40
Consensus pattern (245 bp):
ATCCACTTCTCTGTATCTCATCAAGAAGATGGATTTGGTCCACTTTCTTGTATCTCATCAGGAAG
ATGACCATTTTATTGCTTTGACCCACTTCTCTGTATCTCATCAAGAAGATGGGGTTTGAAGTCTC
ACTCACATTGAGATTCACTTCATTATTTTGATCTACTTCTCTGTATCTCATCAAGAAGATGACCA
TCTCATTATTGTAATCCACTTCTCTGTATCTTATCAAGAAGACAGATTTG
Found at i:76199 original size:85 final size:85
Alignment explanation
Indices: 76054--76222 Score: 259
Period size: 85 Copynumber: 2.0 Consensus size: 85
76044 CGCTTCATCT
* * * * *
76054 ATTTGGTCTACTTCTCTGTATCTCATCAAGAAGATGACCGTCTCATTGTTTTAGTCCACTTCTCT
1 ATTTGATCCACTTCTCTGTATCTCATCAAGAAGATGACCGTATCATTGTTTAACTCCACTTCTCT
76119 GTATCTTATCAAGAAGATGA
66 GTATCTTATCAAGAAGATGA
* *
76139 ATTTGATCCACTTCTCTGTATCTCATCAAGAAGATGACCGTATTATTGCTTTAACT-CACTTCTT
1 ATTTGATCCACTTCTCTGTATCTCATCAAGAAGATGACCGTATCATTG-TTTAACTCCACTTCTC
76203 TGTATCTTATCAAGAAGATG
65 TGTATCTTATCAAGAAGATG
76223 GGGTTTGAAT
Statistics
Matches: 76, Mismatches: 7, Indels: 2
0.89 0.08 0.02
Matches are distributed among these distances:
85 71 0.93
86 5 0.07
ACGTcount: A:0.26, C:0.21, G:0.14, T:0.39
Consensus pattern (85 bp):
ATTTGATCCACTTCTCTGTATCTCATCAAGAAGATGACCGTATCATTGTTTAACTCCACTTCTCT
GTATCTTATCAAGAAGATGA
Found at i:76472 original size:207 final size:208
Alignment explanation
Indices: 75901--76590 Score: 931
Period size: 207 Copynumber: 3.3 Consensus size: 208
75891 AGATTTGGTT
* * ** * * * *
75901 CACTTCTCTGTATCTCATCAAGAAGATGGATTTGGTTTACTTCTCTT-TATCTTATCAGGAAGTT
1 CACTTCTCTGTATCTCATCAAGAAGATGAATTTGATCCACTT-TTTTGTATCTCATCAAGAAGAT
*
75965 GACCGTTTTATTGCTTTGACCCACTTCTCTGTATCTCATCAAGAAGATGGAGGTTTGAAGTTTCA
65 GACCGTTTTATTGCTTTGACCCACTTCTCTGTATCTCATCAAGAAGATGG-GGTTTGAAGTCTCA
* ** *
76030 CTCACATTGAGATTCGCTTCATCT-ATTTGGTCTACTTCTCTGTATCTCATCAAGAAGATGACCG
129 TTCGTATTGAGCTTCGCTTCAT-TGATTTGGTCTACTTCTCTGTATCTCATCAAGAAGATGACCG
* *
76094 TCTCATTGTTTT-AGTC
193 CCTCATT-TTTTCAATC
* * *
76110 CACTTCTCTGTATCTTATCAAGAAGATGAATTTGATCCACTTCTCTGTATCTCATCAAGAAGATG
1 CACTTCTCTGTATCTCATCAAGAAGATGAATTTGATCCACTTTTTTGTATCTCATCAAGAAGATG
* * * * * *
76175 ACCGTATTATTGCTTTAACTCACTTCTTTGTATCTTATCAAGAAGATGGGGTTTGAATTCTCATT
66 ACCGTTTTATTGCTTTGACCCACTTCTCTGTATCTCATCAAGAAGATGGGGTTTGAAGTCTCATT
** * *
76240 CGTATTGAGCTTCGCTTTGTTGATTTGGTCTACTTCTCTATATCTCATCAGGAAGATGACCGCCT
131 CGTATTGAGCTTCGCTTCATTGATTTGGTCTACTTCTCTGTATCTCATCAAGAAGATGACCGCCT
76305 CATTTTTTCAATC
196 CATTTTTTCAATC
* * * * * *
76318 CATTTCTCTGTATCTCATTAGGAAGATGAATTTGGTCCACTTTTTTGTATCTAATCAGGAA-ATG
1 CACTTCTCTGTATCTCATCAAGAAGATGAATTTGATCCACTTTTTTGTATCTCATCAAGAAGATG
*
76382 ACCGTTTTATTGCTTTGACCCACTTCTCTGTATCTCATCAGGAAGATGGGGTTTGAAGTCTCATT
66 ACCGTTTTATTGCTTTGACCCACTTCTCTGTATCTCATCAAGAAGATGGGGTTTGAAGTCTCATT
* *
76447 CGTATTGAGCTTCGCTTCATTGATTTGATCTATTTCTCTGTATCTCATCAAGAAGATGACCGCCT
131 CGTATTGAGCTTCGCTTCATTGATTTGGTCTACTTCTCTGTATCTCATCAAGAAGATGACCGCCT
76512 C-TTTGTTTCAATC
196 CATTT-TTTCAATC
* * * *
76525 CACTTCTCTGTATCTCACCAAGAAGACGGATTTGATCCACTTTTTCGTATCTCATCAAGAAGATG
1 CACTTCTCTGTATCTCATCAAGAAGATGAATTTGATCCACTTTTTTGTATCTCATCAAGAAGATG
76590 A
66 A
76591 GGGTTTGAAG
Statistics
Matches: 416, Mismatches: 60, Indels: 11
0.85 0.12 0.02
Matches are distributed among these distances:
206 3 0.01
207 185 0.44
208 132 0.32
209 96 0.23
ACGTcount: A:0.23, C:0.21, G:0.16, T:0.39
Consensus pattern (208 bp):
CACTTCTCTGTATCTCATCAAGAAGATGAATTTGATCCACTTTTTTGTATCTCATCAAGAAGATG
ACCGTTTTATTGCTTTGACCCACTTCTCTGTATCTCATCAAGAAGATGGGGTTTGAAGTCTCATT
CGTATTGAGCTTCGCTTCATTGATTTGGTCTACTTCTCTGTATCTCATCAAGAAGATGACCGCCT
CATTTTTTCAATC
Found at i:76626 original size:161 final size:160
Alignment explanation
Indices: 76401--76751 Score: 489
Period size: 161 Copynumber: 2.2 Consensus size: 160
76391 TTGCTTTGAC
*
76401 CCACTTCTCTGTATCTCATCAGGAAGATG-GGGTTTGAAGTCTCATTCGTATTGAGCTTCGCTTC
1 CCACTTCTTTGTATCTCATCAGGAAGATGAGGGTTTGAAGTCTCATTCG-ATTGAGCTTCGCTTC
* * * *
76465 ATTGATTTGA-TCTATTTCTCTGTATCTCATCAAGAAGATGACCGCCTCTTTGTTTCAATCCACT
65 ATCGATTT-ATTCTACTTCTCTATATCTCATCAAGAAGATGACCGCCTCATTGTTTCAATCCACT
76529 TCTCTGTATCTCACCAA-GAAGACGGA-TTTGAT
129 TCTCTGTATCTCA-CAAGGAAGACGGATTTTG-T
* *
76561 CCACTT-TTTCGTATCTCATCAAGAAGATGAGGGTTTGAAGTTTCACTTAC-ATTGAGCTTCGCT
1 CCACTTCTTT-GTATCTCATCAGGAAGATGAGGGTTTGAAGTCTCA-TT-CGATTGAGCTTCGCT
* * * *
76624 TCATCGATTTATTCTACTTCTCTATATCTTATCAGGAAGATGACCGTCTCATTGTTTTAATCCAC
63 TCATCGATTTATTCTACTTCTCTATATCTCATCAAGAAGATGACCGCCTCATTGTTTCAATCCAC
*
76689 TTCTCTGTATCTCATAAGGAAGACGGATTTTGT
128 TTCTCTGTATCTCACAAGGAAGACGGATTTTGT
76722 CCACTTCTTTGTATCTCATCAGGAAGATGA
1 CCACTTCTTTGTATCTCATCAGGAAGATGA
76752 CCGCCTCTTT
Statistics
Matches: 170, Mismatches: 13, Indels: 15
0.86 0.07 0.08
Matches are distributed among these distances:
159 2 0.01
160 27 0.16
161 131 0.77
162 9 0.05
163 1 0.01
ACGTcount: A:0.24, C:0.22, G:0.17, T:0.38
Consensus pattern (160 bp):
CCACTTCTTTGTATCTCATCAGGAAGATGAGGGTTTGAAGTCTCATTCGATTGAGCTTCGCTTCA
TCGATTTATTCTACTTCTCTATATCTCATCAAGAAGATGACCGCCTCATTGTTTCAATCCACTTC
TCTGTATCTCACAAGGAAGACGGATTTTGT
Found at i:76772 original size:85 final size:85
Alignment explanation
Indices: 76639--76834 Score: 275
Period size: 85 Copynumber: 2.3 Consensus size: 85
76629 GATTTATTCT
* * * * * * * *
76639 ACTTCTCTATATCTTATCAGGAAGATGACCGTCTCATTGTTTTAATCCACTTCTCTGTATCTCAT
1 ACTTCTTTGTATCTCATCAGGAAGATGACCGCCTCATTATTTCAATCCACTTCTCTATATCTCAC
* *
76704 AAGGAAGACGGATTTTGTCC
66 AAGGAAGACAGATTTGGTCC
*
76724 ACTTCTTTGTATCTCATCAGGAAGATGACCGCCTCTTTATTTCAATCCACTTCTCTATATCTCAC
1 ACTTCTTTGTATCTCATCAGGAAGATGACCGCCTCATTATTTCAATCCACTTCTCTATATCTCAC
*
76789 CAGGAAGACAGATTTGGTCC
66 AAGGAAGACAGATTTGGTCC
*
76809 ACTTCTTTGTATCTCACCAGGAAGAT
1 ACTTCTTTGTATCTCATCAGGAAGAT
76835 TGATTTGGTC
Statistics
Matches: 98, Mismatches: 13, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
85 98 1.00
ACGTcount: A:0.25, C:0.24, G:0.15, T:0.36
Consensus pattern (85 bp):
ACTTCTTTGTATCTCATCAGGAAGATGACCGCCTCATTATTTCAATCCACTTCTCTATATCTCAC
AAGGAAGACAGATTTGGTCC
Found at i:76871 original size:37 final size:37
Alignment explanation
Indices: 76769--76871 Score: 143
Period size: 37 Copynumber: 2.8 Consensus size: 37
76759 TTTATTTCAA
* *
76769 TCCACTTCTCTATATCTCACCAGGAAGACAGATTTGG
1 TCCACTTCTCTGTATCTCACCAGGAAGATAGATTTGG
* *
76806 TCCACTTCTTTGTATCTCACCAGGAAGATTGATTTGG
1 TCCACTTCTCTGTATCTCACCAGGAAGATAGATTTGG
* * *
76843 TCTACTTCTCTGTATCTCATCAAGAAGAT
1 TCCACTTCTCTGTATCTCACCAGGAAGAT
76872 GAGGGTTTGA
Statistics
Matches: 58, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 58 1.00
ACGTcount: A:0.25, C:0.24, G:0.16, T:0.35
Consensus pattern (37 bp):
TCCACTTCTCTGTATCTCACCAGGAAGATAGATTTGG
Found at i:77066 original size:85 final size:85
Alignment explanation
Indices: 76913--77079 Score: 228
Period size: 85 Copynumber: 2.0 Consensus size: 85
76903 TGCTTTATTG
* * * * *
76913 ATTTTGTCTACTTCTCTGTATCTAATCAGGAAAATGATCGTCTTATTGTTTTAATCCACTTCTCT
1 ATTTGGTCTACTTCTCTGTATCTAATCAGGAAAATGATCCTCTTATTGCTTGAACCCACTTCTCT
76978 GTATCTCATAAGGAAGACAA
66 GTATCTCATAAGGAAGACAA
* * * *
76998 ATTTGGTCTACTTCTCTGTATCTCATCAGGAAGATGA-CCTCTTTATTGCTTGGACCCACTTCTT
1 ATTTGGTCTACTTCTCTGTATCTAATCAGGAAAATGATCCTC-TTATTGCTTGAACCCACTTCTC
*
77062 TGTATCTCATCAGGAAGA
65 TGTATCTCATAAGGAAGA
77080 TGGGGTTTGA
Statistics
Matches: 71, Mismatches: 10, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
84 3 0.04
85 68 0.96
ACGTcount: A:0.25, C:0.21, G:0.15, T:0.39
Consensus pattern (85 bp):
ATTTGGTCTACTTCTCTGTATCTAATCAGGAAAATGATCCTCTTATTGCTTGAACCCACTTCTCT
GTATCTCATAAGGAAGACAA
Found at i:77175 original size:208 final size:209
Alignment explanation
Indices: 76846--77241 Score: 582
Period size: 208 Copynumber: 1.9 Consensus size: 209
76836 GATTTGGTCT
* * *
76846 ACTTCTCTGTATCTCATCAAGAAGATGAGGGTTTGAAGTTTCACTCACATTGAGCTTTGCTTTAT
1 ACTTCTCTGTATCTCATCAAGAAGATGAGGGTTTGAAGTTTCACTCACATTGAGATTCGCTTTAC
* * * * *
76911 TGATTTTGTCTACTTCTCTGTATCTAATCAGGAAAATGATCGTCTTATTGTTTTAATCCACTTCT
66 TGATTTGGTCTACTTCTCTGTATCTAATCAAGAAAATAATCATCTCATTGTTTTAATCCACTTCT
*
76976 CTGTATCTCAT-AAGGAAGACAAATTTGG-TCTACTTCTCTGTATCTCATCAGGAAGATGACCTC
131 CTATATCTCATCAA-GAAGACAAATTTGGTTC-ACTTCTCTGTATCTCATCAGGAAGATGACCTC
77039 TTTATTGCTTGGACCC
194 TTTATTGCTTGGACCC
* * * ** * *
77055 ACTTCTTTGTATCTCATCAGGAAGATG-GGGTTTGAAGTTTCATTCGTATTGATATTCGCTTTGC
1 ACTTCTCTGTATCTCATCAAGAAGATGAGGGTTTGAAGTTTCACTCACATTGAGATTCGCTTTAC
* *
77119 TGATTTGGTCTACTTCTCTGTATCTCATCAAGAAGATAATCATCTCATTGTTTTAATCCACTTCT
66 TGATTTGGTCTACTTCTCTGTATCTAATCAAGAAAATAATCATCTCATTGTTTTAATCCACTTCT
*
77184 CTATATCTCATCAAGAAGACGAATTTGGTTCACTTCTCTGTATCTCATCAGGAAGATG
131 CTATATCTCATCAAGAAGACAAATTTGGTTCACTTCTCTGTATCTCATCAGGAAGATG
77242 GGGATTTGAA
Statistics
Matches: 166, Mismatches: 19, Indels: 5
0.87 0.10 0.03
Matches are distributed among these distances:
208 137 0.83
209 29 0.17
ACGTcount: A:0.24, C:0.20, G:0.16, T:0.39
Consensus pattern (209 bp):
ACTTCTCTGTATCTCATCAAGAAGATGAGGGTTTGAAGTTTCACTCACATTGAGATTCGCTTTAC
TGATTTGGTCTACTTCTCTGTATCTAATCAAGAAAATAATCATCTCATTGTTTTAATCCACTTCT
CTATATCTCATCAAGAAGACAAATTTGGTTCACTTCTCTGTATCTCATCAGGAAGATGACCTCTT
TATTGCTTGGACCC
Found at i:77337 original size:162 final size:160
Alignment explanation
Indices: 77054--77358 Score: 461
Period size: 162 Copynumber: 1.9 Consensus size: 160
77044 TGCTTGGACC
* * * * *
77054 CACTTCTTTGTATCTCATCAGGAAGATGGGGTTTGAAGTTTCATTCGTATTGATATTCGCTTTGC
1 CACTTCTCTGTATCTCATCAGGAAGATGGGGTTTGAAGTTTCACTCATATTGAGATTCACTTTGC
*
77119 TGATTTGGTCTACTTCTCTGTATCTCATCAAGAAGATAATCATCTCATTGTTTTAATCCACTTCT
66 TGATTTGGTCTACTTCTCTGTATCTCATCAAGAAGATAACCATCTCATTGTTTTAATCCACTTCT
77184 CTATATCTCATCAAGAAGACGAATTTGGTT
131 CTATATCTCATCAAGAAGACGAATTTGGTT
*
77214 CACTTCTCTGTATCTCATCAGGAAGATGGGGATTTGAAGTTTCACTCATATTGAGCTTCAC-TT-
1 CACTTCTCTGTATCTCATCAGGAAGATGGGG-TTTGAAGTTTCACTCATATTGAGATTCACTTTG
* * * *
77277 CATCGATTTGGTTTACTTCTCCTGTATCTCCTCAAGAAGATGACCATCTTATTGTTTTAATCCAC
65 C-T-GATTTGGTCTACTTCT-CTGTATCTCATCAAGAAGATAACCATCTCATTGTTTTAATCCAC
77342 TTCTCTATATCTCATCA
127 TTCTCTATATCTCATCA
77359 GGAATATGAT
Statistics
Matches: 130, Mismatches: 11, Indels: 6
0.88 0.07 0.04
Matches are distributed among these distances:
159 1 0.01
160 33 0.25
161 39 0.30
162 57 0.44
ACGTcount: A:0.24, C:0.21, G:0.15, T:0.40
Consensus pattern (160 bp):
CACTTCTCTGTATCTCATCAGGAAGATGGGGTTTGAAGTTTCACTCATATTGAGATTCACTTTGC
TGATTTGGTCTACTTCTCTGTATCTCATCAAGAAGATAACCATCTCATTGTTTTAATCCACTTCT
CTATATCTCATCAAGAAGACGAATTTGGTT
Found at i:77982 original size:46 final size:46
Alignment explanation
Indices: 77752--78079 Score: 363
Period size: 46 Copynumber: 7.4 Consensus size: 46
77742 ATGGGGTTTG
* * * **
77752 ATCTGCCCCTCTTGAC-TAGGGGTAAGAGATCAGAATGTAACTTCA
1 ATCTGCCCCTCTTGACTTAGGGGTAAAATATTAGAATGTGGCTTCA
** * * * *
77797 ATCTAACCCTCTTTA-TTAAGGGTAAAATATTGGAA--TGACTTCA
1 ATCTGCCCCTCTTGACTTAGGGGTAAAATATTAGAATGTGGCTTCA
* * * *
77840 ATCTGGCCTTCTTGACTTAGGGGTAAAAGATTATAA--T--CTTCA
1 ATCTGCCCCTCTTGACTTAGGGGTAAAATATTAGAATGTGGCTTCA
* * * *
77882 ATCTGCCCCTTTTGA-TTAGGGGTAAAAGATT-GAAT-TAGCTTTA
1 ATCTGCCCCTCTTGACTTAGGGGTAAAATATTAGAATGTGGCTTCA
77925 ATCTGCCCCTCTTGACTTAGGGGTAAAATATTAGAATGTGGCTTCA
1 ATCTGCCCCTCTTGACTTAGGGGTAAAATATTAGAATGTGGCTTCA
* * *
77971 ATCTGTCCCTCTTGACTTAGGGGTAAAATATTGGAATGTGGCTTTA
1 ATCTGCCCCTCTTGACTTAGGGGTAAAATATTAGAATGTGGCTTCA
78017 ATCTGCCCCTCTTGACTTAGGGGTAAAATATTAGAATGTGGCTTCA
1 ATCTGCCCCTCTTGACTTAGGGGTAAAATATTAGAATGTGGCTTCA
* *
78063 ATCAGCTCCTCTTGACT
1 ATCTGCCCCTCTTGACT
78080 AGAAGGTCTT
Statistics
Matches: 241, Mismatches: 34, Indels: 15
0.83 0.12 0.05
Matches are distributed among these distances:
40 2 0.01
41 17 0.07
42 17 0.07
43 36 0.15
44 32 0.13
45 30 0.12
46 107 0.44
ACGTcount: A:0.27, C:0.19, G:0.20, T:0.34
Consensus pattern (46 bp):
ATCTGCCCCTCTTGACTTAGGGGTAAAATATTAGAATGTGGCTTCA
Found at i:78031 original size:92 final size:89
Alignment explanation
Indices: 77752--78077 Score: 387
Period size: 85 Copynumber: 3.7 Consensus size: 89
77742 ATGGGGTTTG
* * ** * * *
77752 ATCTGCCCCTCTTGAC-TAGGGGTAAGAGATCAGAATGTAACTTCAATCTAACCCTCTTTATTAA
1 ATCTGCCCCTCTTGACTTAGGGGTAAAAGATTAGAATGTGGCTTCAATCT-GCCCTCTTGATTAG
* *
77816 GGGTAAAATATTGGAA-TGACTTCA
65 GGGTAAAATATTGGAATTGGCTTTA
* * * *
77840 ATCTGGCCTTCTTGACTTAGGGGTAAAAGATTATAA--T--CTTCAATCTGCCCCTTTTGATTAG
1 ATCTGCCCCTCTTGACTTAGGGGTAAAAGATTAGAATGTGGCTTCAATCTG-CCCTCTTGATTAG
* *
77901 GGGTAAAAGATT-GAATTAGCTTTA
65 GGGTAAAATATTGGAATTGGCTTTA
*
77925 ATCTGCCCCTCTTGACTTAGGGGTAAAATATTAGAATGTGGCTTCAATCTGTCCCTCTTGACTTA
1 ATCTGCCCCTCTTGACTTAGGGGTAAAAGATTAGAATGTGGCTTCAATCTG-CCCTCTTGA-TTA
77990 GGGGTAAAATATTGGAATGTGGCTTTA
64 GGGGTAAAATATTGGAAT-TGGCTTTA
* *
78017 ATCTGCCCCTCTTGACTTAGGGGTAAAATATTAGAATGTGGCTTCAATCAGCTCCTCTTGA
1 ATCTGCCCCTCTTGACTTAGGGGTAAAAGATTAGAATGTGGCTTCAATCTGC-CCTCTTGA
78078 CTAGAAGGTC
Statistics
Matches: 205, Mismatches: 22, Indels: 18
0.84 0.09 0.07
Matches are distributed among these distances:
84 3 0.01
85 67 0.33
87 2 0.01
88 14 0.07
89 34 0.17
90 15 0.07
91 5 0.02
92 65 0.32
ACGTcount: A:0.28, C:0.18, G:0.20, T:0.34
Consensus pattern (89 bp):
ATCTGCCCCTCTTGACTTAGGGGTAAAAGATTAGAATGTGGCTTCAATCTGCCCTCTTGATTAGG
GGTAAAATATTGGAATTGGCTTTA
Found at i:85811 original size:48 final size:48
Alignment explanation
Indices: 85758--85873 Score: 144
Period size: 48 Copynumber: 2.4 Consensus size: 48
85748 GATTTGGTCT
*
85758 ACTTCTCTGTATCTCATCAGGAAGATGACTGCCTCATT-ATTTCAATCA
1 ACTTCTCTGTATCTCATCAGGAAGATGACTGCCTCATTGATTT-AACCA
* * * * * *
85806 ACTTCTCTGTATTTCATCATGAAGATGACTGCTTTATTGCTTTAACCC
1 ACTTCTCTGTATCTCATCAGGAAGATGACTGCCTCATTGATTTAACCA
*
85854 ACTTCTCTATATCTCATCAG
1 ACTTCTCTGTATCTCATCAG
85874 AAATATGGGG
Statistics
Matches: 57, Mismatches: 10, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
48 54 0.95
49 3 0.05
ACGTcount: A:0.25, C:0.25, G:0.11, T:0.39
Consensus pattern (48 bp):
ACTTCTCTGTATCTCATCAGGAAGATGACTGCCTCATTGATTTAACCA
Found at i:86205 original size:62 final size:62
Alignment explanation
Indices: 86108--86231 Score: 239
Period size: 62 Copynumber: 2.0 Consensus size: 62
86098 AGTTTCACTC
*
86108 ATATTGAGCTTCGCTTCATCGATTTGGTCTACTTCTCTGTATCTCATCAGGAAGATGACTGT
1 ATATTGAGCTTCGCTTCATCGATTTGGTCTACTTCTCTGTATCTCATCAGGAAGATAACTGT
86170 ATATTGAGCTTCGCTTCATCGATTTGGTCTACTTCTCTGTATCTCATCAGGAAGATAACTGT
1 ATATTGAGCTTCGCTTCATCGATTTGGTCTACTTCTCTGTATCTCATCAGGAAGATAACTGT
86232 CTCATTGTTT
Statistics
Matches: 61, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
62 61 1.00
ACGTcount: A:0.22, C:0.21, G:0.19, T:0.39
Consensus pattern (62 bp):
ATATTGAGCTTCGCTTCATCGATTTGGTCTACTTCTCTGTATCTCATCAGGAAGATAACTGT
Found at i:86303 original size:85 final size:85
Alignment explanation
Indices: 86191--86357 Score: 210
Period size: 85 Copynumber: 2.0 Consensus size: 85
86181 CGCTTCATCG
* * * * *
86191 ATTTGGTCTACTTCTCTGTATCTCATCAGGAAGATAA-CTGTCTCATTGTTTTAATCCACTTCTC
1 ATTTAGTCCACTTCTCTGTATCTCATCAAGAAGATAATC-GTCTCATTGCTTTAACCCACTTCTC
*
86255 TGTATCTCATCAGGAAGACGA
65 TGTATCTCATCAAGAAGACGA
* * * * *
86276 ATTTAGTCCACTTCTCTGTATCTCATCAAGAAGTTGATCGTTTTATTGCTTTGACCCACTTCTCT
1 ATTTAGTCCACTTCTCTGTATCTCATCAAGAAGATAATCGTCTCATTGCTTTAACCCACTTCTCT
*
86341 GTATCTTATCAAGAAGA
66 GTATCTCATCAAGAAGA
86358 TGGGGTTTGA
Statistics
Matches: 69, Mismatches: 12, Indels: 2
0.83 0.14 0.02
Matches are distributed among these distances:
85 68 0.99
86 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.14, T:0.39
Consensus pattern (85 bp):
ATTTAGTCCACTTCTCTGTATCTCATCAAGAAGATAATCGTCTCATTGCTTTAACCCACTTCTCT
GTATCTCATCAAGAAGACGA
Found at i:86385 original size:270 final size:270
Alignment explanation
Indices: 85902--86436 Score: 781
Period size: 270 Copynumber: 2.0 Consensus size: 270
85892 TTTCACTCGC
* * *
85902 ATTGAGCTTCGCTTCATCGATTTGGTCTACTTCTTTGTATCTTATCAGGAAGATGACCATCTAAT
1 ATTGAGCTTCGCTTCATCGATTTGGTCTACTTCTCTGTATCTCATCAGGAAGATAACCATCTAAT
* *
85967 TATTTTAATCCACTTCTCTGTATCTCATCAAGAAGACAGATTTGGTTAACTTCTCTGTATCTCAT
66 TATTTTAATCCACTTCTCTGTATCTCATCAAGAAGACAGATTTAGTCAACTTCTCTGTATCTCAT
* *
86032 CAAGAAGATGACCGTTTATTGCTTTGACTCACTTCTCTACATCTCTTCAGGAAGATGGGGGTTTG
131 CAAGAAGATGACCGTTTATTGCTTTGACCCACTTCTCTACATCTCTTCAAGAAGATGGGGGTTTG
*
86097 AAGTTTCACTCATATTGAGCTTCGCTTCATCGATTTGGTCTACTTCTCTGTATCTCATCAGGAAG
196 AAGTTTCACTCATATTGAGCTTCGCTTCATCGATTTGATCTACTTCTCTGTATCTCATCAGGAAG
86162 ATGACTGTAT
261 ATGACTGTAT
** *
86172 ATTGAGCTTCGCTTCATCGATTTGGTCTACTTCTCTGTATCTCATCAGGAAGATAACTGTCTCAT
1 ATTGAGCTTCGCTTCATCGATTTGGTCTACTTCTCTGTATCTCATCAGGAAGATAACCATCTAAT
* * *
86237 TGTTTTAATCCACTTCTCTGTATCTCATCAGGAAGAC-GAATTTAGTCCACTTCTCTGTATCTCA
66 TATTTTAATCCACTTCTCTGTATCTCATCAAGAAGACAG-ATTTAGTCAACTTCTCTGTATCTCA
* * **
86301 TCAAGAAGTTGATCGTTTTATTGCTTTGACCCACTTCTCTGTATCT-TATCAAGAAGAT-GGGGT
130 TCAAGAAGATGACCG-TTTATTGCTTTGACCCACTTCTCTACATCTCT-TCAAGAAGATGGGGGT
* ** ** * *
86364 TTGAA-TTCTCATTTGTATTGAGCTTCGCTTTGTTGATTTGATCTACTTCTCTGTATCTTATCAG
193 TTGAAGTT-TCACTCATATTGAGCTTCGCTTCATCGATTTGATCTACTTCTCTGTATCTCATCAG
86428 GAAGATGAC
257 GAAGATGAC
86437 CGCCTCATTG
Statistics
Matches: 236, Mismatches: 25, Indels: 8
0.88 0.09 0.03
Matches are distributed among these distances:
269 3 0.01
270 197 0.83
271 36 0.15
ACGTcount: A:0.23, C:0.21, G:0.17, T:0.39
Consensus pattern (270 bp):
ATTGAGCTTCGCTTCATCGATTTGGTCTACTTCTCTGTATCTCATCAGGAAGATAACCATCTAAT
TATTTTAATCCACTTCTCTGTATCTCATCAAGAAGACAGATTTAGTCAACTTCTCTGTATCTCAT
CAAGAAGATGACCGTTTATTGCTTTGACCCACTTCTCTACATCTCTTCAAGAAGATGGGGGTTTG
AAGTTTCACTCATATTGAGCTTCGCTTCATCGATTTGATCTACTTCTCTGTATCTCATCAGGAAG
ATGACTGTAT
Found at i:86530 original size:208 final size:208
Alignment explanation
Indices: 86171--86728 Score: 839
Period size: 208 Copynumber: 2.7 Consensus size: 208
86161 GATGACTGTA
* * * * *
86171 TATTGAGCTTCGCTTCATCGATTTGGTCTACTTCTCTGTATCTCATCAGGAAGATAACTGTCTCA
1 TATTGAGCTTCGCTTCATTGATTTGATCTACTTCTCTGTATCTCATCAGGAAGATGACCGCCTCA
* * *
86236 TTGTTTTAATCCACTTCTCTGTATCTCATCAGGAAGACGAATTTAGTCCACTTCTCTGTATCTCA
66 TTGTTTCAATCCACTTCTCTGTATCTCATCAGGAAGACGGATTTGGTCCACTTCTCTGTATCTCA
* * * * *
86301 TCAAGAAGTTGATCGTTTTATTGCTTTGACCCACTTCTCTGTATCTTATCAAGAAGATGGGGTTT
131 TCAGGAAGATGATCATTTTATTGCTTTGACCCACTTCTCTGTATCTCATCAAGAAGATGAGGTTT
* *
86366 GAATTCTCATTTG
196 GAAGTCTCATTCG
** *
86379 TATTGAGCTTCGCTTTGTTGATTTGATCTACTTCTCTGTATCTTATCAGGAAGATGACCGCCTCA
1 TATTGAGCTTCGCTTCATTGATTTGATCTACTTCTCTGTATCTCATCAGGAAGATGACCGCCTCA
* * * *
86444 TTGTTTCAATCCACTTCTTTATATCTCATTAGGAAGACGGATTTGGTCCACTTCTTTGTATCTCA
66 TTGTTTCAATCCACTTCTCTGTATCTCATCAGGAAGACGGATTTGGTCCACTTCTCTGTATCTCA
* *
86509 TCAGGAAGATGA-CTATTTTATTGCTTTGACCCACTTCTCTGTATCTCATTAGGAAGATGAGGTT
131 TCAGGAAGATGATC-ATTTTATTGCTTTGACCCACTTCTCTGTATCTCATCAAGAAGATGAGGTT
86573 TGAAGTCTCATTCG
195 TGAAGTCTCATTCG
* *
86587 TATTGAGCTTCGCTTCATTGATTTGATCTATTTCTCTGTATCTCATCAGGAAGATGACCGCCTCT
1 TATTGAGCTTCGCTTCATTGATTTGATCTACTTCTCTGTATCTCATCAGGAAGATGACCGCCTCA
* * *
86652 TTGTTTCAATCCACTTCTCTGTATCTCATCAGGAAGACTGATTTGGTCTACTTCTCCGTATCTCA
66 TTGTTTCAATCCACTTCTCTGTATCTCATCAGGAAGACGGATTTGGTCCACTTCTCTGTATCTCA
86717 TCAGGAAGATGA
131 TCAGGAAGATGA
86729 GGGTTTGAAG
Statistics
Matches: 313, Mismatches: 36, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
207 1 0.00
208 312 1.00
ACGTcount: A:0.22, C:0.21, G:0.17, T:0.39
Consensus pattern (208 bp):
TATTGAGCTTCGCTTCATTGATTTGATCTACTTCTCTGTATCTCATCAGGAAGATGACCGCCTCA
TTGTTTCAATCCACTTCTCTGTATCTCATCAGGAAGACGGATTTGGTCCACTTCTCTGTATCTCA
TCAGGAAGATGATCATTTTATTGCTTTGACCCACTTCTCTGTATCTCATCAAGAAGATGAGGTTT
GAAGTCTCATTCG
Found at i:86799 original size:161 final size:159
Alignment explanation
Indices: 86539--86889 Score: 517
Period size: 161 Copynumber: 2.2 Consensus size: 159
86529 TTGCTTTGAC
*
86539 CCACTTCTCTGTATCTCATTAGGAAGATGAGGTTTGAAGTCTCATTCGTATTGAGCTTCGCTTCA
1 CCACTTCTCTGTATCTCATCAGGAAGATGAGGTTTGAAGTCTCATTCG-ATTGAGCTTCGCTTCA
* ** * *
86604 TTGATTTGATCTATTTCTCTGTATCTCATCAGGAAGATGACCGCCTCTTTGTTTCAATCCACTTC
65 TCGATTTGATCTACCTCTCTATATCTCATCAGGAAGATGACCGCCTCATTGTTTCAATCCACTTC
* *
86669 TCTGTATCTCATCAGGAAGACTGATTTGGT
130 TCTGTATCTCATAAGGAAGACGGATTTGGT
* * *
86699 CTACTTCTCCGTATCTCATCAGGAAGATGAGGGTTTGAAGTTTCACTTAC-ATTGAGCTTCGCTT
1 CCACTTCTCTGTATCTCATCAGGAAGATGA-GGTTTGAAGTCTCA-TT-CGATTGAGCTTCGCTT
* * *
86763 CATCGATTT-ATTCTACCTCTCTATATCTTATCAGGAAGATGACCGTCTCATTGTTTTAATCCAC
63 CATCGATTTGA-TCTACCTCTCTATATCTCATCAGGAAGATGACCGCCTCATTGTTTCAATCCAC
86827 TTCTCTGTATCTCATAAGGAAGACGGATTTGGT
127 TTCTCTGTATCTCATAAGGAAGACGGATTTGGT
86860 CCACTTCTCTGTATCTCATCAGGAAGATGA
1 CCACTTCTCTGTATCTCATCAGGAAGATGA
86890 CCTCTTTATT
Statistics
Matches: 171, Mismatches: 16, Indels: 7
0.88 0.08 0.04
Matches are distributed among these distances:
160 28 0.16
161 140 0.82
162 2 0.01
163 1 0.01
ACGTcount: A:0.23, C:0.22, G:0.18, T:0.37
Consensus pattern (159 bp):
CCACTTCTCTGTATCTCATCAGGAAGATGAGGTTTGAAGTCTCATTCGATTGAGCTTCGCTTCAT
CGATTTGATCTACCTCTCTATATCTCATCAGGAAGATGACCGCCTCATTGTTTCAATCCACTTCT
CTGTATCTCATAAGGAAGACGGATTTGGT
Found at i:96469 original size:12 final size:11
Alignment explanation
Indices: 96442--96483 Score: 50
Period size: 11 Copynumber: 3.8 Consensus size: 11
96432 AGTTAAATAT
96442 TATTTTATTAA
1 TATTTTATTAA
*
96453 TATTTTCTTAGA
1 TATTTTATTA-A
*
96465 TA-TTTATTAT
1 TATTTTATTAA
96475 TATTTTATT
1 TATTTTATT
96484 TAGAAAATGG
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
10 2 0.08
11 21 0.81
12 3 0.12
ACGTcount: A:0.29, C:0.02, G:0.02, T:0.67
Consensus pattern (11 bp):
TATTTTATTAA
Found at i:99064 original size:32 final size:32
Alignment explanation
Indices: 99028--99092 Score: 121
Period size: 32 Copynumber: 2.0 Consensus size: 32
99018 TAGATGGAGA
*
99028 GATAGTTGAAGTAAATGGTATTGGATCGAATG
1 GATAGTTGAAGTAAATGGTAATGGATCGAATG
99060 GATAGTTGAAGTAAATGGTAATGGATCGAATG
1 GATAGTTGAAGTAAATGGTAATGGATCGAATG
99092 G
1 G
99093 TTTGAATCGC
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.35, C:0.03, G:0.32, T:0.29
Consensus pattern (32 bp):
GATAGTTGAAGTAAATGGTAATGGATCGAATG
Found at i:112086 original size:31 final size:31
Alignment explanation
Indices: 112023--112086 Score: 92
Period size: 31 Copynumber: 2.1 Consensus size: 31
112013 AGTCACAAGG
* **
112023 CATGAAGAACATACCCACATATTTTCTGTCA
1 CATGAAAAACATACCCACATATTCACTGTCA
*
112054 CATGAAAAACATACCCACATATTCACTTTCA
1 CATGAAAAACATACCCACATATTCACTGTCA
112085 CA
1 CA
112087 ACAGTCATCA
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.39, C:0.28, G:0.06, T:0.27
Consensus pattern (31 bp):
CATGAAAAACATACCCACATATTCACTGTCA
Found at i:114654 original size:24 final size:24
Alignment explanation
Indices: 114626--114687 Score: 70
Period size: 24 Copynumber: 2.6 Consensus size: 24
114616 AGAAATAATC
114626 TTTCAGTTAAACTCAGTTTAATTG
1 TTTCAGTTAAACTCAGTTTAATTG
* ** *
114650 TTTCAATTAAACTTTGTTTATTTG
1 TTTCAGTTAAACTCAGTTTAATTG
* *
114674 TTTGAGTCAAACTC
1 TTTCAGTTAAACTC
114688 TTATTAGTCT
Statistics
Matches: 30, Mismatches: 8, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
24 30 1.00
ACGTcount: A:0.27, C:0.13, G:0.11, T:0.48
Consensus pattern (24 bp):
TTTCAGTTAAACTCAGTTTAATTG
Found at i:116198 original size:16 final size:16
Alignment explanation
Indices: 116148--116200 Score: 65
Period size: 15 Copynumber: 3.4 Consensus size: 16
116138 CAAAAGCTCG
116148 AGGGTCA-AAAATCGA
1 AGGGTCAGAAAATCGA
* *
116163 AGGGTC-GACAGTCGA
1 AGGGTCAGAAAATCGA
*
116178 GGGGTCAGAAAATCGA
1 AGGGTCAGAAAATCGA
116194 AGGGTCA
1 AGGGTCA
116201 CATGGTTGAC
Statistics
Matches: 30, Mismatches: 6, Indels: 3
0.77 0.15 0.08
Matches are distributed among these distances:
15 17 0.57
16 13 0.43
ACGTcount: A:0.36, C:0.15, G:0.36, T:0.13
Consensus pattern (16 bp):
AGGGTCAGAAAATCGA
Found at i:117019 original size:49 final size:50
Alignment explanation
Indices: 116966--117201 Score: 237
Period size: 50 Copynumber: 4.8 Consensus size: 50
116956 ACCATTTCGG
*
116966 CCTCAACCTTTCCCTTCACGTCTTC-ATGGTACCGGGTTCGCTGTTACGA
1 CCTCAACCTTTCCCTTCACGTCTTCTAAGGTACCGGGTTCGCTGTTACGA
* * * *
117015 CCTCAACCTTT-CTTATCACGTCTTCTAAGGTACTGGGTTCGTTGTTGC-A
1 CCTCAACCTTTCCCT-TCACGTCTTCTAAGGTACCGGGTTCGCTGTTACGA
* * * * *
117064 GCCTCAACCTTTTCCTTCACGTCTTC-ATGGTATCGGGTTCGCCGTTGCGA
1 -CCTCAACCTTTCCCTTCACGTCTTCTAAGGTACCGGGTTCGCTGTTACGA
* * ** * * * *
117114 CCTCAACCTTTCCCTTCACATCTTCTAAAGTACCGAATTTGCGGTTATGG
1 CCTCAACCTTTCCCTTCACGTCTTCTAAGGTACCGGGTTCGCTGTTACGA
* * *
117164 CCTCAACCTTTCCATTTACGTCTTCTAAGGTATCGGGT
1 CCTCAACCTTTCCCTTCACGTCTTCTAAGGTACCGGGT
117202 CTGCCATTGC
Statistics
Matches: 151, Mismatches: 30, Indels: 11
0.79 0.16 0.06
Matches are distributed among these distances:
48 2 0.01
49 62 0.41
50 85 0.56
51 2 0.01
ACGTcount: A:0.17, C:0.31, G:0.18, T:0.35
Consensus pattern (50 bp):
CCTCAACCTTTCCCTTCACGTCTTCTAAGGTACCGGGTTCGCTGTTACGA
Found at i:117044 original size:99 final size:100
Alignment explanation
Indices: 116917--117146 Score: 272
Period size: 99 Copynumber: 2.3 Consensus size: 100
116907 CCATTGTGGT
* * *
116917 CTCAACCTTT-TCCATCACATCTTGTAAGGTGCTAAGTCTACCAT-TT-CGGCCTCAACCTTTCC
1 CTCAACCTTTCTCCATCACATCTTCTAAGGTACTAAGT-T-CCATGTTGCAGCCTCAACCTTTCC
*
116979 CTTCACGTCTTCATGGTACCGGGTTCGCTGTTACGAC
64 CTTCACGTCTTCATGGTACCGGGTTCGCCGTTACGAC
* * ** ** *
117016 CTCAACCTTTCT-TATCACGTCTTCTAAGGTACTGGGTTCGTTGTTGCAGCCTCAACCTTTTCCT
1 CTCAACCTTTCTCCATCACATCTTCTAAGGTACTAAGTTCCATGTTGCAGCCTCAACCTTTCCCT
* *
117080 TCACGTCTTCATGGTATCGGGTTCGCCGTTGCGAC
66 TCACGTCTTCATGGTACCGGGTTCGCCGTTACGAC
* *
117115 CTCAACCTTTC-CCTTCACATCTTCTAAAGTAC
1 CTCAACCTTTCTCCATCACATCTTCTAAGGTAC
117147 CGAATTTGCG
Statistics
Matches: 110, Mismatches: 17, Indels: 8
0.81 0.13 0.06
Matches are distributed among these distances:
97 2 0.02
98 3 0.03
99 104 0.95
100 1 0.01
ACGTcount: A:0.17, C:0.32, G:0.16, T:0.35
Consensus pattern (100 bp):
CTCAACCTTTCTCCATCACATCTTCTAAGGTACTAAGTTCCATGTTGCAGCCTCAACCTTTCCCT
TCACGTCTTCATGGTACCGGGTTCGCCGTTACGAC
Found at i:117069 original size:50 final size:48
Alignment explanation
Indices: 116966--117138 Score: 206
Period size: 49 Copynumber: 3.5 Consensus size: 48
116956 ACCATTTCGG
* *
116966 CCTCAACCTTTCCCTTCACGTCTTCATGGTACCGGGTTCGCTGTTACGA
1 CCTCAACCTTT-CCTTCACGTCTTCATGGTACTGGGTTCGCTGTTGCGA
* * *
117015 CCTCAACCTTTCTTATCACGTCTTCTAAGGTACTGGGTTCGTTGTTGC-A
1 CCTCAACCTTTCCT-TCACGTCTTC-ATGGTACTGGGTTCGCTGTTGCGA
*
117064 GCCTCAACCTTTTCCTTCACGTCTTCATGGTA-TCGGGTTCGCCGTTGCGA
1 -CCTCAACC-TTTCCTTCACGTCTTCATGGTACT-GGGTTCGCTGTTGCGA
*
117114 CCTCAACCTTTCCCTTCACATCTTC
1 CCTCAACCTTT-CCTTCACGTCTTC
117139 TAAAGTACCG
Statistics
Matches: 107, Mismatches: 10, Indels: 14
0.82 0.08 0.11
Matches are distributed among these distances:
48 6 0.06
49 59 0.55
50 37 0.35
51 5 0.05
ACGTcount: A:0.14, C:0.34, G:0.17, T:0.35
Consensus pattern (48 bp):
CCTCAACCTTTCCTTCACGTCTTCATGGTACTGGGTTCGCTGTTGCGA
Found at i:117217 original size:50 final size:50
Alignment explanation
Indices: 116965--117328 Score: 234
Period size: 50 Copynumber: 7.3 Consensus size: 50
116955 TACCATTTCG
* * * *
116965 GCCTCAACCTTTCCCTTCACGTCTTC-ATGGTACCGGGT-TCGCTGTTAC-
1 GCCTCAACCTTTCCCTTCACGTCTTCTAAGGTATCGGGTCT-GCCGTTGCA
* **
117013 GACCTCAACCTTT-CTTATCACGTCTTCTAAGGTA-CTGGGT-TCGTTGTTGCA
1 G-CCTCAACCTTTCCCT-TCACGTCTTCTAAGGTATC-GGGTCT-GCCGTTGCA
* *
117064 GCCTCAACCTTTTCCTTCACGTCTTC-ATGGTATCGGGT-TCGCCGTTGC-
1 GCCTCAACCTTTCCCTTCACGTCTTCTAAGGTATCGGGTCT-GCCGTTGCA
* * * ** * * ***
117112 GACCTCAACCTTTCCCTTCACATCTTCTAAAGTACCGAATTTGCGGTTATG
1 G-CCTCAACCTTTCCCTTCACGTCTTCTAAGGTATCGGGTCTGCCGTTGCA
* * *
117163 GCCTCAACCTTTCCATTTACGTCTTCTAAGGTATCGGGTCTGCCATTGCA
1 GCCTCAACCTTTCCCTTCACGTCTTCTAAGGTATCGGGTCTGCCGTTGCA
* * * * ** * *
117213 GCCTCAACCTTTCCCTTTA--TATATCTATGGTACTAGATTC-GTCGTTGTA
1 GCCTCAACCTTTCCCTTCACGTCT-TCTAAGGTA-TCGGGTCTGCCGTTGCA
* * *
117262 GCCTCAATCCTTT-CCATCACGTCTTCTAAGGTATCGGGTTTGTCG-TGACA
1 GCCTCAA-CCTTTCCCTTCACGTCTTCTAAGGTATCGGGTCTGCCGTTG-CA
117312 GCCTCAACCTTTCCCTT
1 GCCTCAACCTTTCCCTT
117329 TATCTTCAAG
Statistics
Matches: 247, Mismatches: 50, Indels: 36
0.74 0.15 0.11
Matches are distributed among these distances:
48 6 0.02
49 97 0.39
50 137 0.55
51 7 0.03
ACGTcount: A:0.17, C:0.30, G:0.17, T:0.35
Consensus pattern (50 bp):
GCCTCAACCTTTCCCTTCACGTCTTCTAAGGTATCGGGTCTGCCGTTGCA
Found at i:117267 original size:99 final size:98
Alignment explanation
Indices: 116965--117331 Score: 290
Period size: 99 Copynumber: 3.7 Consensus size: 98
116955 TACCATTTCG
* * * * *
116965 GCCTCAACCTTTCCCTTCACGTCTTC-ATGGTACCGGGTTCGCTGTTAC-GACCTCAACCTTT--
1 GCCTCAACCTTTCCATTCACGTCTTCTAAGGTATCGGGTT-GC-CTTGCAG-CCTCAACCTTTCC
* * * * *
117026 C-TTATCACGTCTTCTAAGGTACTGGGTTCGTTGTTGCA
63 CTTTAT-A--TCATCTAAGGTACTAGATTCGTCGTTGTA
*
117064 GCCTCAACCTTTTCC-TTCACGTCTTC-ATGGTATCGGGTTCGCCGTTGC-GACCTCAACCTTTC
1 GCCTCAACC-TTTCCATTCACGTCTTCTAAGGTATCGGGTT-GCC-TTGCAG-CCTCAACCTTTC
* * * * * * * *
117126 CCTTCACATCTTCTAAAGTAC-CGAATTTG-CGGTTATG
62 CCTTTATATCATCTAAGGTACTAG-ATTCGTC-GTTGTA
*
117163 GCCTCAACCTTTCCATTTACGTCTTCTAAGGTATCGGGTCTGCCATTGCAGCCTCAACCTTTCCC
1 GCCTCAACCTTTCCATTCACGTCTTCTAAGGTATCGGGT-TGCC-TTGCAGCCTCAACCTTTCCC
*
117228 TTTATAT-ATCTATGGTACTAGATTCGTCGTTGTA
64 TTTATATCATCTAAGGTACTAGATTCGTCGTTGTA
* *
117262 GCCTCAATCCTTTCCA-TCACGTCTTCTAAGGTATCGGGTTTGTCGTGACAGCCTCAACCTTTCC
1 GCCTCAA-CCTTTCCATTCACGTCTTCTAAGGTATCGGG-TTGCCTTG-CAGCCTCAACCTTTCC
117326 CTTTAT
63 CTTTAT
117332 CTTCAAGGTA
Statistics
Matches: 224, Mismatches: 28, Indels: 32
0.79 0.10 0.11
Matches are distributed among these distances:
98 8 0.04
99 157 0.70
100 53 0.24
101 4 0.02
102 2 0.01
ACGTcount: A:0.17, C:0.30, G:0.17, T:0.36
Consensus pattern (98 bp):
GCCTCAACCTTTCCATTCACGTCTTCTAAGGTATCGGGTTGCCTTGCAGCCTCAACCTTTCCCTT
TATATCATCTAAGGTACTAGATTCGTCGTTGTA
Found at i:127451 original size:14 final size:14
Alignment explanation
Indices: 127429--127468 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 14
127419 TTGATGTGGC
* *
127429 GCTGGCGTGGCCGT
1 GCTGACGTGGCAGT
127443 GCTGACGTGGCAGT
1 GCTGACGTGGCAGT
*
127457 GCTAACGTGGCA
1 GCTGACGTGGCA
127469 ATGGTGGCTG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
14 23 1.00
ACGTcount: A:0.12, C:0.25, G:0.42, T:0.20
Consensus pattern (14 bp):
GCTGACGTGGCAGT
Found at i:129311 original size:133 final size:131
Alignment explanation
Indices: 129068--129349 Score: 368
Period size: 133 Copynumber: 2.1 Consensus size: 131
129058 AAATTTGTTA
* * * **
129068 ACAAATTATCTATTTTTTGGTGAATTACAAGAAATGGCAAAGCCCGAACAAAAAAATAACTAGTG
1 ACAAATTATCTAATTTTTGGTAAATTACAAGAAAAGGCAAAGCCCGAACAAAAAAATAACTAACG
* ** *
129133 CGATTTAAACCCAAACAACATCTGGGGCGATAAACACCCTGACCATCAGT-TCATCACATGGGGT
66 CGACTTAAACCCAAACAACATCTGAAGCGATAAACACCCTGACCATCA-TATCATCACATGGAGT
129197 TC
130 TC
* * *
129199 ATAAATTATCTAATTTTTGGTAAATTACAAGAACAAGGCAAAGCCCGAACAAAAAACATGATTAA
1 ACAAATTATCTAATTTTTGGTAAATTACAAGAA-AAGGCAAAGCCCGAACAAAAAA-ATAACTAA
* * * * * *
129264 CGCGACTTAAATCCAAACCACATTTGAAGCGATAAACACCTTGACCATCATATCATTACATTGAG
64 CGCGACTTAAACCCAAACAACATCTGAAGCGATAAACACCCTGACCATCATATCATCACATGGAG
129329 TTC
129 TTC
129332 ACAAATTATCTAATTTTT
1 ACAAATTATCTAATTTTT
129350 AAAACATACT
Statistics
Matches: 129, Mismatches: 19, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
131 30 0.23
132 22 0.17
133 77 0.60
ACGTcount: A:0.40, C:0.20, G:0.13, T:0.26
Consensus pattern (131 bp):
ACAAATTATCTAATTTTTGGTAAATTACAAGAAAAGGCAAAGCCCGAACAAAAAAATAACTAACG
CGACTTAAACCCAAACAACATCTGAAGCGATAAACACCCTGACCATCATATCATCACATGGAGTT
C
Found at i:130305 original size:22 final size:23
Alignment explanation
Indices: 130260--130306 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 23
130250 AACAAAACTT
* *
130260 TCAAAAGTGTTTATTTTTTTAATA
1 TCAAAAGTATTTA-TTTTTAAATA
130284 TCAAAAGTATTTA-TTTTAAATA
1 TCAAAAGTATTTATTTTTAAATA
130306 T
1 T
130307 TTTTAAAATT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
22 9 0.43
24 12 0.57
ACGTcount: A:0.38, C:0.04, G:0.06, T:0.51
Consensus pattern (23 bp):
TCAAAAGTATTTATTTTTAAATA
Found at i:131828 original size:2 final size:2
Alignment explanation
Indices: 131821--131850 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
131811 TCATAAACAT
131821 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
131851 AGGGACCTGA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
GA
Found at i:134335 original size:30 final size:33
Alignment explanation
Indices: 134285--134350 Score: 93
Period size: 30 Copynumber: 2.1 Consensus size: 33
134275 TTTTAATGAT
*
134285 AAAATTATATTTTAATTTTTTTTAAAATAATAA
1 AAAATTATATTTTAATTTTTTTAAAAATAATAA
*
134318 AAAATTA-A-TTTAA-TTTTTTAAAAATGATAA
1 AAAATTATATTTTAATTTTTTTAAAAATAATAA
134348 AAA
1 AAA
134351 TAAAAGCCAT
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
30 18 0.58
31 5 0.16
32 1 0.03
33 7 0.23
ACGTcount: A:0.53, C:0.00, G:0.02, T:0.45
Consensus pattern (33 bp):
AAAATTATATTTTAATTTTTTTAAAAATAATAA
Found at i:134702 original size:43 final size:42
Alignment explanation
Indices: 134641--134726 Score: 154
Period size: 43 Copynumber: 2.0 Consensus size: 42
134631 AAAATAGAAA
*
134641 TATATGAGATTTTTAATAGGACTGTTTGTTTGTTTTTTTTGAG
1 TATATGAGAATTTTAATAGGACTGTTTGTTT-TTTTTTTTGAG
134684 TATATGAGAATTTTAATAGGACTGTTTGTTTTTTTTTTTGAG
1 TATATGAGAATTTTAATAGGACTGTTTGTTTTTTTTTTTGAG
134726 T
1 T
134727 GAATTTTCAA
Statistics
Matches: 42, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
42 12 0.29
43 30 0.71
ACGTcount: A:0.22, C:0.02, G:0.20, T:0.56
Consensus pattern (42 bp):
TATATGAGAATTTTAATAGGACTGTTTGTTTTTTTTTTTGAG
Found at i:137978 original size:25 final size:25
Alignment explanation
Indices: 137950--138000 Score: 102
Period size: 25 Copynumber: 2.0 Consensus size: 25
137940 AGAAATGAAA
137950 ATGGGACAGGGTGAAATGAAAGCAT
1 ATGGGACAGGGTGAAATGAAAGCAT
137975 ATGGGACAGGGTGAAATGAAAGCAT
1 ATGGGACAGGGTGAAATGAAAGCAT
138000 A
1 A
138001 CTCCGAAATC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.41, C:0.08, G:0.35, T:0.16
Consensus pattern (25 bp):
ATGGGACAGGGTGAAATGAAAGCAT
Found at i:138181 original size:16 final size:16
Alignment explanation
Indices: 138162--138207 Score: 58
Period size: 16 Copynumber: 2.9 Consensus size: 16
138152 AGAGTGAAAA
138162 AAAATTAGAAAGATGG
1 AAAATTAGAAAGATGG
*
138178 AAAATT-GAAAGGGTGG
1 AAAATTAGAAA-GATGG
*
138194 AAAAATAGAAAGAT
1 AAAATTAGAAAGAT
138208 AAAAAATATA
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
15 4 0.16
16 17 0.68
17 4 0.16
ACGTcount: A:0.57, C:0.00, G:0.26, T:0.17
Consensus pattern (16 bp):
AAAATTAGAAAGATGG
Found at i:142735 original size:26 final size:28
Alignment explanation
Indices: 142693--142764 Score: 96
Period size: 26 Copynumber: 2.6 Consensus size: 28
142683 AAATTCGAAG
142693 AGAAAAAAAATTCGAAATAGTAAAAAAA
1 AGAAAAAAAATTCGAAATAGTAAAAAAA
142721 AGAAAAAAAA-T-GAAATAGTAAAAAATA
1 AGAAAAAAAATTCGAAATAGTAAAAAA-A
* *
142748 A-AAAGAAAATTCAAAAT
1 AGAAAAAAAATTCGAAAT
142765 TAAAAAGAAA
Statistics
Matches: 39, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
26 21 0.54
27 4 0.10
28 14 0.36
ACGTcount: A:0.72, C:0.03, G:0.10, T:0.15
Consensus pattern (28 bp):
AGAAAAAAAATTCGAAATAGTAAAAAAA
Found at i:142745 original size:28 final size:30
Alignment explanation
Indices: 142693--142756 Score: 82
Period size: 28 Copynumber: 2.2 Consensus size: 30
142683 AAATTCGAAG
142693 AGAAAAAAAATTCGAAATAGT-AAA-AAAA
1 AGAAAAAAAATTCGAAATAGTAAAATAAAA
142721 AGAAAAAAAA-T-GAAATAGTAAAAAATAAAA
1 AGAAAAAAAATTCGAAATAGT--AAAATAAAA
142751 AGAAAA
1 AGAAAA
142757 TTCAAAATTA
Statistics
Matches: 32, Mismatches: 0, Indels: 6
0.84 0.00 0.16
Matches are distributed among these distances:
26 8 0.25
27 1 0.03
28 10 0.31
29 3 0.09
30 10 0.31
ACGTcount: A:0.75, C:0.02, G:0.11, T:0.12
Consensus pattern (30 bp):
AGAAAAAAAATTCGAAATAGTAAAATAAAA
Found at i:143644 original size:18 final size:20
Alignment explanation
Indices: 143614--143658 Score: 65
Period size: 20 Copynumber: 2.2 Consensus size: 20
143604 AAGGAAATTG
*
143614 AGAGAAGAAAAAAAT-AAATA
1 AGAGAA-AAAAAATTGAAATA
143634 AGAGAAAAAAAATTGAAATA
1 AGAGAAAAAAAATTGAAATA
143654 AGAGA
1 AGAGA
143659 TCTTGAGAGG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 7 0.30
20 16 0.70
ACGTcount: A:0.71, C:0.00, G:0.18, T:0.11
Consensus pattern (20 bp):
AGAGAAAAAAAATTGAAATA
Found at i:143781 original size:22 final size:21
Alignment explanation
Indices: 143756--143823 Score: 56
Period size: 21 Copynumber: 3.3 Consensus size: 21
143746 CGAAGAACGT
143756 GAAAAAGAAAAAGAGAGTGTGA
1 GAAAAAGAAAAAGA-AGTGTGA
* *
143778 G-AAAAGAGAAAGAAG-AT--
1 GAAAAAGAAAAAGAAGTGTGA
143795 GAAAAAGAAAAAGAAAGTG-GAA
1 GAAAAAGAAAAAG-AAGTGTG-A
143817 GAAAAAG
1 GAAAAAG
143824 TGAGAAAAAA
Statistics
Matches: 36, Mismatches: 4, Indels: 12
0.69 0.08 0.23
Matches are distributed among these distances:
17 1 0.03
18 10 0.28
19 4 0.11
20 2 0.06
21 11 0.31
22 8 0.22
ACGTcount: A:0.65, C:0.00, G:0.29, T:0.06
Consensus pattern (21 bp):
GAAAAAGAAAAAGAAGTGTGA
Found at i:145450 original size:52 final size:51
Alignment explanation
Indices: 145289--145458 Score: 227
Period size: 50 Copynumber: 3.3 Consensus size: 51
145279 TTAATAAAGT
* *
145289 CATACATTATGTAACTCTCATGTTAGTTAAGTATGCATCA-TAAA-TAATGA
1 CATACATTATGTAACTCTCATGTTAGTTAAGTTTGCATTATTAAATTAA-GA
* * *
145339 CAGACATTATGTAACTCTCATGTTAGTTAAGTTTGCATTATAAAATTATGA
1 CATACATTATGTAACTCTCATGTTAGTTAAGTTTGCATTATTAAATTAAGA
* * *
145390 CATGCATTATGTAACTCCCATGTTAGTTAAAGTTTGCATTATTAAATTAAGT
1 CATACATTATGTAACTCTCATGTTAGTT-AAGTTTGCATTATTAAATTAAGA
*
145442 CATACATTAAGTAACTC
1 CATACATTATGTAACTC
145459 ATTTGTTCAT
Statistics
Matches: 104, Mismatches: 13, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
50 37 0.36
51 30 0.29
52 37 0.36
ACGTcount: A:0.36, C:0.14, G:0.12, T:0.38
Consensus pattern (51 bp):
CATACATTATGTAACTCTCATGTTAGTTAAGTTTGCATTATTAAATTAAGA
Found at i:157553 original size:11 final size:11
Alignment explanation
Indices: 157539--157575 Score: 56
Period size: 11 Copynumber: 3.4 Consensus size: 11
157529 ATTAATTATT
*
157539 TTTTAAAAATA
1 TTTTAAAATTA
157550 TTTTAAAATTA
1 TTTTAAAATTA
*
157561 ATTTAAAATTA
1 TTTTAAAATTA
157572 TTTT
1 TTTT
157576 TTAAATATAA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
11 23 1.00
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (11 bp):
TTTTAAAATTA
Done.