Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01013420.1 Kokia drynarioides strain JFW-HI SEQ_128445, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6376
ACGTcount: A:0.35, C:0.15, G:0.14, T:0.36

Warning! 50 characters in sequence are not A, C, G, or T


Found at i:1128 original size:6 final size:6

Alignment explanation


    Indices: 1111--1149  Score: 51
    Period size: 6  Copynumber: 6.2  Consensus size: 6

       1101 ATTCGAGTTA

                                         *               
       1111 TAAATCT TAAATT TAAATT TAAATT CAAATAT TAAATT T
          1 TAAAT-T TAAATT TAAATT TAAATT TAAAT-T TAAATT T

       1150 TGAACATTTA


Statistics
Matches: 29,  Mismatches: 2, Indels: 3
        0.85            0.06        0.09

Matches are distributed among these distances:
   6   19  0.66
   7   10  0.34

ACGTcount: A:0.49, C:0.05, G:0.00, T:0.46


Consensus pattern (6 bp):   
TAAATT

Found at i:1174 original size:28 final size:27

Alignment explanation


    Indices: 1112--1190  Score: 83
    Period size: 28  Copynumber: 3.0  Consensus size: 27

       1102 TTCGAGTTAT

                                       
       1112 AAATCTTAAA-TTT-AAATTTAAATTC
          1 AAATCTTAAATTTTGAAATTTAAATTC

                *                   *   
       1137 AAATATTAAATTTTGAACATTTAACTTC
          1 AAATCTTAAATTTTGAA-ATTTAAATTC

                 *     *               
       1165 AAATCGTAAATATTG-AATCTTAAATT
          1 AAATCTTAAATTTTGAAAT-TTAAATT

       1191 TTTAATCTCG


Statistics
Matches: 44,  Mismatches: 6, Indels: 6
        0.79            0.11        0.11

Matches are distributed among these distances:
  25    9  0.20
  26    5  0.11
  27    9  0.20
  28   21  0.48

ACGTcount: A:0.46, C:0.09, G:0.04, T:0.42


Consensus pattern (27 bp):   
AAATCTTAAATTTTGAAATTTAAATTC
Done.