genome.fa.s13425.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01013425.1 Kokia drynarioides strain JFW-HI SEQ_128451, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  75275

Tables:   1   

This is table  1  of  1  ( 73 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
602--649	24	1.9	26	84	16	66	45	0	22	31	1.53
712--830	23	5.2	23	86	4	159	12	20	23	43	1.86
712--830	46	2.6	46	90	0	175	12	20	23	43	1.86
815--846	16	2.0	16	100	0	64	12	18	25	43	1.85
795--869	39	1.9	39	88	0	114	9	18	24	48	1.77
2291--2398	23	4.7	23	75	6	103	44	23	19	12	1.85
2361--2411	23	2.2	23	96	0	93	41	23	21	13	1.89
4117--4189	31	2.4	31	97	0	137	20	32	10	35	1.88
6795--6995	57	3.5	57	83	8	210	37	28	3	29	1.75
6795--6995	29	6.9	29	81	9	207	37	28	3	29	1.75
6796--7084	116	2.5	116	80	8	277	34	29	4	31	1.78
6891--7058	29	5.9	28	75	8	81	32	29	5	31	1.82
11442--11633	96	2.0	96	83	8	239	36	12	19	30	1.89
11887--12054	29	5.9	28	75	8	81	31	5	29	32	1.82
11955--12120	87	1.9	86	84	7	210	31	3	28	36	1.74
11955--12149	29	6.8	28	82	6	176	30	3	28	37	1.74
11861--12149	116	2.5	115	80	8	275	31	4	29	34	1.78
11950--12149	57	3.4	57	83	8	217	30	4	29	37	1.76
11978--12150	29	6.0	28	82	8	188	30	2	28	38	1.72
11982--12142	87	1.9	87	85	5	227	31	3	26	38	1.72
14756--14828	31	2.4	31	97	0	137	35	10	32	20	1.88
16534--16654	23	5.3	23	78	9	113	13	19	22	44	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17815--17922	23	4.7	23	75	6	103	44	23	19	12	1.85
17885--17935	23	2.2	23	96	0	93	41	23	21	13	1.89
19641--19713	31	2.4	31	97	0	137	20	32	10	35	1.88
22319--22519	57	3.5	57	83	8	210	37	28	3	29	1.75
22319--22519	29	6.9	29	81	9	207	37	28	3	29	1.75
22320--22608	116	2.5	116	80	8	277	34	29	4	31	1.78
22415--22582	29	5.9	28	75	8	81	32	29	5	31	1.82
25714--25757	18	2.4	18	81	7	54	36	0	0	63	0.95
26325--26349	10	2.5	10	100	0	50	20	0	0	80	0.72
27096--27159	21	2.9	21	83	9	65	26	1	1	70	1.05
27124--27166	23	2.0	22	90	9	70	32	2	0	65	1.06
27133--27187	28	2.0	28	85	0	74	36	3	1	58	1.26
27266--27319	26	2.2	24	83	12	65	57	1	1	38	1.20
27265--27320	12	4.4	13	72	18	55	58	1	1	37	1.19
27257--27333	14	5.6	14	71	18	56	61	1	1	36	1.13
27336--27364	12	2.4	12	100	0	58	51	20	0	27	1.47
27993--28020	3	9.3	3	100	0	56	67	0	0	32	0.91
42769--42809	20	2.0	21	85	4	57	31	0	4	63	1.15
45378--45477	20	5.3	18	71	19	71	65	3	2	30	1.19
45378--45421	18	2.3	20	88	7	65	61	2	2	34	1.21
45391--45478	18	4.8	18	77	10	63	67	2	2	28	1.15
46102--46177	28	2.7	28	74	11	84	43	0	1	55	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46102--46163	17	3.7	17	82	4	81	41	0	1	56	1.09
46102--46177	17	4.2	17	73	20	64	43	0	1	55	1.08
46766--46864	12	8.5	12	72	14	64	52	3	3	41	1.32
46792--46864	3	24.3	3	76	5	67	56	4	1	38	1.27
47813--48039	29	7.8	29	81	7	264	36	27	2	33	1.69
47813--48126	58	5.4	58	81	7	291	35	28	3	32	1.75
47813--48126	117	2.7	117	83	8	349	35	28	3	32	1.75
47809--48126	29	10.9	29	75	12	249	34	29	4	32	1.76
49966--50013	13	3.5	13	80	8	51	56	2	6	35	1.36
54026--54072	23	2.0	24	83	8	60	59	21	10	8	1.57
55700--55927	59	3.9	59	77	7	189	31	4	30	33	1.77
55705--55836	29	4.5	29	67	14	74	30	6	29	34	1.82
55705--55995	30	9.8	30	73	15	191	31	4	29	34	1.78
55821--55991	89	1.9	90	88	5	258	33	3	26	35	1.74
55821--55991	59	2.9	59	86	6	204	33	3	26	35	1.74
57780--57832	17	3.2	16	76	7	52	41	1	1	54	1.22
57791--57860	17	4.1	17	80	7	79	48	2	2	45	1.32
57805--57852	6	8.3	6	77	9	55	52	2	2	43	1.24
59886--59949	28	2.3	28	78	7	67	40	4	3	51	1.38
61010--61106	30	3.2	30	77	0	104	20	25	41	12	1.87
61758--62280	29	17.8	29	76	11	449	35	29	2	32	1.72
61758--62280	59	8.9	59	83	5	553	35	29	2	32	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61758--62267	117	4.3	118	84	5	620	36	28	2	32	1.71
73810--74139	168	2.0	169	84	1	439	36	21	22	19	1.95
73949--74639	205	3.4	205	88	0	1042	36	20	22	20	1.95
75008--75073	6	11.2	6	71	9	55	43	4	1	50	1.32
75000--75073	17	4.2	17	81	6	85	44	4	1	50	1.29
75007--75059	19	2.9	19	83	8	74	39	5	1	52	1.36
75047--75088	17	2.5	17	88	0	57	54	2	4	38	1.34

Tables:   1

The End!