Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01013428.1 Kokia drynarioides strain JFW-HI SEQ_128454, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 8805
ACGTcount: A:0.28, C:0.17, G:0.15, T:0.39
Warning! 52 characters in sequence are not A, C, G, or T
Found at i:493 original size:216 final size:215
Alignment explanation
Indices: 9--546 Score: 609
Period size: 215 Copynumber: 2.5 Consensus size: 215
1 TATTTATG
* * * * * *
9 TGAGAATTATTTCCCTCTTGGTTCCTGGACGAACATATGAACTAGTCAAACTTTTACAAGTTCTT
1 TGAGAATTATTTCTCTCATGGTTCTTGGACGAACTTCTGAACTAGTCAAACATTTACAAGTTCTT
* * * ** *
74 TTATAACTTCGGTTCCTCAGAGTATTCAAGATGATCCATTTCTTTGACCGGTTTTTTGAAGATTC
66 TTATAACTTCGATTCCTCAGAGTATTCAAGATGATCCATTCCTTCGACCAATTTTTCGAAGATTC
* * * * * *
139 CATTATCGAGAAATCGCAGCATTTTGTAAAAATAGTTTGCCATTTGTAAATAAATTTTGGTCTTT
131 CATGATCGAGAAATCGCAGCATTTGGTAAAAAGAGCTTGCCATTTGTAAACAAATTTTGCTCTTT
* *
204 GAATTAAAAAGTTTTTTACA
196 GAATAAAAAACTTTTTTACA
* * * * *
224 TTAGAATTATTTCTCTCTTGGTTCTTGGACGAAGTATC-GAACTTGTCAAACATTTACTAGTTCT
1 TGAGAATTATTTCTCTCATGGTTCTTGGACGAACT-TCTGAACTAGTCAAACATTTACAAGTTCT
* * **
288 TTTAAAACTTCGATTCCTTAGAGTAGCCAAGATGATCCATTCCTTCGACCAATTTTTCG-AGCAT
65 TTTATAACTTCGATTCCTCAGAGTATTCAAGATGATCCATTCCTTCGACCAATTTTTCGAAG-AT
* * ** * *
352 TCCATGATC-AGGAAATCGTATCATTTGGTCTAAAGAGCTTGTCATTTTGTAAACAACTTTTGCT
129 TCCATGATCGA-GAAATCGCAGCATTTGGTAAAAAGAGCTTGCCA-TTTGTAAACAAATTTTGCT
416 CTTTGAATAAAAAACTTTTTTACGA
192 CTTTGAATAAAAAACTTTTTTAC-A
* * * *
441 -GAGAATTGTTTCTCTCATGGTT-TTCGGACGAACTTCTGAACTGGTTAAACATTTACGAGTTCT
1 TGAGAATTATTTCTCTCATGGTTCTT-GGACGAACTTCTGAACTAGTCAAACATTTACAAGTTCT
* * *
504 TTTATAACTTCGATTCCTGAGAGTATTAAAGACGATCCATTCC
65 TTTATAACTTCGATTCCTCAGAGTATTCAAGATGATCCATTCC
547 ATGCCTGGGA
Statistics
Matches: 270, Mismatches: 46, Indels: 13
0.82 0.14 0.04
Matches are distributed among these distances:
214 3 0.01
215 141 0.52
216 125 0.46
217 1 0.00
ACGTcount: A:0.28, C:0.17, G:0.16, T:0.38
Consensus pattern (215 bp):
TGAGAATTATTTCTCTCATGGTTCTTGGACGAACTTCTGAACTAGTCAAACATTTACAAGTTCTT
TTATAACTTCGATTCCTCAGAGTATTCAAGATGATCCATTCCTTCGACCAATTTTTCGAAGATTC
CATGATCGAGAAATCGCAGCATTTGGTAAAAAGAGCTTGCCATTTGTAAACAAATTTTGCTCTTT
GAATAAAAAACTTTTTTACA
Found at i:1114 original size:216 final size:216
Alignment explanation
Indices: 574--1814 Score: 1296
Period size: 216 Copynumber: 5.8 Consensus size: 216
564 TCGTTTGATT
* * * * *
574 TAAATAGTTT-ATCATTTTGTATACAATTTTTAGTCTTTGAATTAAATACTTATTTACGTGAGAA
1 TAAATAGTTTGA-CATTTTGTAAACAAATTTTGGTCTTTGAATTAAAAACTTTTTTACGTGAGAA
* * * *
638 TTATTTCCCTCTTGGTTCTTGGACCAACATAT-GAAC-TAGTCAAACTTTTACAAGTTCTTTTAT
65 TTATTTCTCTCTTGGTTCTTGGACGAAC-TATCGAACAT-GTCAAACATTTACTAGTTCTTTTAT
* * * * *
701 AACTTCGGTTCATGAGAGTATTCAAGACGATCCATTTCTTTGACCAATTTTTTGAAG-ATTCCAT
128 AACTTCGATTCCTGAGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCG-AGCATTCCAT
* * *
765 TAT-AGAGAAATCATAGCATTTGGTA
192 GATCAG-GAAATCGTATCATTTGGTA
* * * * *
790 AAAATAGTTTGCCA-TTTGTAAATAAATTTTGGTCTTTGAATTAAAAACTTTTTTACATTAGAAT
1 TAAATAGTTTGACATTTTGTAAACAAATTTTGGTCTTTGAATTAAAAACTTTTTTACGTGAGAAT
** * * *
854 TATTTCTCTCTTTATTCTTGGACGAAGTATCGAACTTGTCAAACATTTACTAGTTCTTTTACAAC
66 TATTTCTCTCTTGGTTCTTGGACGAACTATCGAACATGTCAAACATTTACTAGTTCTTTTATAAC
** *
919 TTCGATTCCTGAGAGTAGCCAAGATGATCCATTCCTTCGACCAATTTTTCGAGCATTCCATGATC
131 TTCGATTCCTGAGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGAGCATTCCATGATC
* *
984 AGGAAATTGTATCATTTGGTC
196 AGGAAATCGTATCATTTGGTA
* * * * * *
1005 TAAATCGTTTGACATTTTGTAAACAACTTTCGGTCTTTGAATTAATAACTTTTTTATGTGGGAAT
1 TAAATAGTTTGACATTTTGTAAACAAATTTTGGTCTTTGAATTAAAAACTTTTTTACGTGAGAAT
* * * * * * * * *
1070 TGTTTCTCTATTTGTTCTTGGACGAACTTTCTAACACGTCAAACATTTTCGATTTCTTTTATAAC
66 TATTTCTCTCTTGGTTCTTGGACGAACTATCGAACATGTCAAACATTTACTAGTTCTTTTATAAC
* * * * * **
1135 TTCGATTCGTGAGAGTATTAAAGACGATTCATTCCTTC-AGTCAATTTTTCGAACATTCCATGCC
131 TTCGATTCCTGAGAGTATTCAAGACGATCCATTCCTTCGA-CCAATTTTTCGAGCATTCCATGAT
* * * *
1199 CAGGAAATCGCT-TCGTTCGATT
195 CAGGAAATCG-TATCATTTGGTA
* * * * *
1221 TAAATAGTTT-ATCATTTTGTATAC-AATTCTTAGTCTTTGAATTAAATACTTATTTATGTGAGA
1 TAAATAGTTTGA-CATTTTGTAAACAAATT-TTGGTCTTTGAATTAAAAACTTTTTTACGTGAGA
* * * *
1284 ATTATTTCCCTCTTGGTTCCTGGACGAACATAT-GAAC-TAGTCAAACTTTTACAAGTTCTTTTA
64 ATTATTTCTCTCTTGGTTCTTGGACGAAC-TATCGAACAT-GTCAAACATTTACTAGTTCTTTTA
* * * * * *
1347 TAACTTCGATTCTTCAGAGTATTCAAGACGATCCATTTCTTTGACCGATTTTTTGAAG-ATTCCA
127 TAACTTCGATTCCTGAGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCG-AGCATTCCA
* * *
1411 TTATC-GAGAAATC-TCAGCATTTTGTA
191 TGATCAG-GAAATCGT-ATCATTTGGTA
* * * * *
1437 AAAATAGTTTGCCA-TTTGTAAATAAATTTTGGTCTTTGAATTAAAAACTTTTTTACTTTAGAAT
1 TAAATAGTTTGACATTTTGTAAACAAATTTTGGTCTTTGAATTAAAAACTTTTTTACGTGAGAAT
* * *
1501 TATTTCTCTCTTGGTTCTTGGACGAAGTATCGAACTTGTCAAACATTTACTAGTTCTTTTAAAAC
66 TATTTCTCTCTTGGTTCTTGGACGAACTATCGAACATGTCAAACATTTACTAGTTCTTTTATAAC
* ** * *
1566 TTCGATTCCTTAGAGTAGCCAAGATGATCCATTCCTTCGACCAATTTTTCAAGCATTCCATGATC
131 TTCGATTCCTGAGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGAGCATTCCATGATC
*
1631 AGG--ATCGTATCATTTGGTC
196 AGGAAATCGTATCATTTGGTA
* * * * *
1650 TAAAGAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATAAAAAACTTTTTTACGAGAGAAT
1 TAAATAGTTTGACATTTTGTAAACAAATTTTGGTCTTTGAATTAAAAACTTTTTTACGTGAGAAT
* * * * * *
1715 TGTTTCTCTCGTGGTTCTTAGACGAACT-TCTGAACAGGTTAAACATTTACGAGTTCTTTTATAA
66 TATTTCTCTCTTGGTTCTTGGACGAACTATC-GAACATGTCAAACATTTACTAGTTCTTTTATAA
*
1779 CTTCGATTCCTGAGAGTATTAAAGACGATCCATTCC
130 CTTCGATTCCTGAGAGTATTCAAGACGATCCATTCC
1815 ACGCTCGGGA
Statistics
Matches: 837, Mismatches: 162, Indels: 54
0.79 0.15 0.05
Matches are distributed among these distances:
213 24 0.03
214 139 0.17
215 319 0.38
216 350 0.42
217 5 0.01
ACGTcount: A:0.29, C:0.17, G:0.14, T:0.40
Consensus pattern (216 bp):
TAAATAGTTTGACATTTTGTAAACAAATTTTGGTCTTTGAATTAAAAACTTTTTTACGTGAGAAT
TATTTCTCTCTTGGTTCTTGGACGAACTATCGAACATGTCAAACATTTACTAGTTCTTTTATAAC
TTCGATTCCTGAGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGAGCATTCCATGATC
AGGAAATCGTATCATTTGGTA
Found at i:1988 original size:192 final size:192
Alignment explanation
Indices: 1650--2004 Score: 480
Period size: 192 Copynumber: 1.8 Consensus size: 192
1640 TCATTTGGTC
* * *
1650 TAAAGAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATAAAAAACTTTTTTACGAGAGAAT
1 TAAAGAGTTTATCATTTTGTAAACAACTTTTAGTCTTTGAATAAAAAACTTATTTACGAGAGAAT
* * * * * * *
1715 TGTTTCTCTCGTGGTTCTTAGACGAACTTCTGAACAGGTTAAACATTTACGAGTTCTTTTATAAC
66 TATTTCCCTCGTGGTTCTTAGACCAACATATGAACAGGTCAAACATTTACAAGTTCTTTTATAAC
*
1780 TTCGATTCCTGAGAGTATTAAAGACGATCCATTCCACGCTCGGGAAATCGCATCGTTTGATT
131 TTCGACTCCTGAGAGTATTAAAGACGATCCATTCCACGCTCGGGAAATCGCATCGTTTGATT
* * * * * *
1842 TAAATAGTTTATCATTTTGTATACAATTTTTAGTCTTTGAATTAAATACTTATTTACGTGAGAAT
1 TAAAGAGTTTATCATTTTGTAAACAACTTTTAGTCTTTGAATAAAAAACTTATTTACGAGAGAAT
* *
1907 TATTTCCCTCTTGGTTCTT-GTACCAACATATGAACTA-GTCAAACTTTTACAAGTTCTTTTATA
66 TATTTCCCTCGTGGTTCTTAG-ACCAACATATGAAC-AGGTCAAACATTTACAAGTTCTTTTATA
* * *
1970 ACTTTGGCTCCTGAGAGTATTCAAGACGATCCATT
129 ACTTCGACTCCTGAGAGTATTAAAGACGATCCATT
2005 TCTTTGACCA
Statistics
Matches: 139, Mismatches: 22, Indels: 4
0.84 0.13 0.02
Matches are distributed among these distances:
191 1 0.01
192 137 0.99
193 1 0.01
ACGTcount: A:0.29, C:0.16, G:0.15, T:0.39
Consensus pattern (192 bp):
TAAAGAGTTTATCATTTTGTAAACAACTTTTAGTCTTTGAATAAAAAACTTATTTACGAGAGAAT
TATTTCCCTCGTGGTTCTTAGACCAACATATGAACAGGTCAAACATTTACAAGTTCTTTTATAAC
TTCGACTCCTGAGAGTATTAAAGACGATCCATTCCACGCTCGGGAAATCGCATCGTTTGATT
Found at i:2381 original size:216 final size:216
Alignment explanation
Indices: 1822--2959 Score: 1147
Period size: 216 Copynumber: 5.3 Consensus size: 216
1812 TCCACGCTCG
* * * * * * * *
1822 GGAAATCGCATCGTTTGATTTAAATAGTTT-ATCATTTTGTATACAATTTTTAGTCTTTGAATTA
1 GGAAATCGTATCATTTGGTATAAATAGTTTGA-CATTTTGTAAATAAATTTTGGTCTTTGAATTA
* * * * * * *
1886 AATACTTATTTACGTGAGAATTATTTCCCTCTTGGTTCTTGTACCAACATAT-GAAC-TAGTCAA
65 AAAACTTTTTTACATGAGAATTCTTTCTCTCTTGGTTCTTGGACGAAC-TATCGAACAT-GTCAA
* * ** * *
1949 ACTTTTACAAGTTCTTTTATAACTTTGGCTCCTGAGAGTATTCAAGACGATCCATTTCTTTGACC
128 ACATTTACAAGTTCTTTTATAACTTCGATTCCTGAGAGTATTCAAGACGATCCATTCCTTCGACC
* *
2014 AATTTTTTGAAG-ATTCCATTAT-A
193 AATTTTTCG-AGCATTCCATGATCA
* * * * *
2037 GGGAAATTGCAGCATTTGGTAAAAATAGTTTGCCA-TTTGTAAATAAATTTTGGTCTTTGAATTA
1 -GGAAATCGTATCATTTGGTATAAATAGTTTGACATTTTGTAAATAAATTTTGGTCTTTGAATTA
* * * * *
2101 AAAACTTTTTTACATTAGAATTCTTTCTCTCTTGATTCTTGGACGGAGTATCGAACTTGTCAAAC
65 AAAACTTTTTTACATGAGAATTCTTTCTCTCTTGGTTCTTGGACGAACTATCGAACATGTCAAAC
* * ** *
2166 ATTTACTAGTTCTTTTACAACTTCGATTCCTGAGAGTAGCCAAGATGATCCATTCCTTCGACCAA
130 ATTTACAAGTTCTTTTATAACTTCGATTCCTGAGAGTATTCAAGACGATCCATTCCTTCGACCAA
2231 TTTTTCGAGCATTCCATGATCA
195 TTTTTCGAGCATTCCATGATCA
* * * * *
2253 GGAAATCGTATCATTTGGTCTAAATCGTTTGACATTTTGTAAATAACTTTCGGTCTTTCAATTAA
1 GGAAATCGTATCATTTGGTATAAATAGTTTGACATTTTGTAAATAAATTTTGGTCTTTGAATTAA
* * * * * * *
2318 TAACTTTTTTACATGGGAATTGTTTCTCTATTTGTTCTTGGACGAACTTTCGAACACGTCAAACA
66 AAACTTTTTTACATGAGAATTCTTTCTCTCTTGGTTCTTGGACGAACTATCGAACATGTCAAACA
* * * * * *
2383 TTTTCGATTTCTTTTATAACTTCGATTCGTGAGAGTATTAAAGACGATTCATTCCTTC-AGCCAA
131 TTTACAAGTTCTTTTATAACTTCGATTCCTGAGAGTATTCAAGACGATCCATTCCTTCGA-CCAA
* ** *
2447 TTTTTCGAACATTCCATGCCCG
195 TTTTTCGAGCATTCCATGATCA
* * * * * * * * *
2469 GGAATTCGCT-TCGTTCGATTTAAATAGTTT-ATCATTTTGTATACAATTTTTAGTCTTTGAATT
1 GGAAATCG-TATCATTTGGTATAAATAGTTTGA-CATTTTGTAAATAAATTTTGGTCTTTGAATT
* * * * *
2532 AAATACTTATTTACGTGAGAATTATTTCCCTCTTGGTTCTTGGACGAACATAT-GAAC-TAGTCA
64 AAAAACTTTTTTACATGAGAATTCTTTCTCTCTTGGTTCTTGGACGAAC-TATCGAACAT-GTCA
* *
2595 AACTTTTACAAGTTCTTTTATAACTTCGATTCCTGAGAGTATTCAAGACGATCCATTCCTTTGAC
127 AACATTTACAAGTTCTTTTATAACTTCGATTCCTGAGAGTATTCAAGACGATCCATTCCTTCGAC
* *
2660 CAATTTTTTGAAG-ATTCCATTAT-A
192 CAATTTTTCG-AGCATTCCATGATCA
* * * * * * *
2684 GACAAATCGCT-GCAGTTGGAAAAAATAGTTTGCCA-TCTGTAAATAAATTTTGGTCTTTGAATT
1 G-GAAATCG-TATCATTTGGTATAAATAGTTTGACATTTTGTAAATAAATTTTGGTCTTTGAATT
* * * *
2747 AAAAAC-TTTTTACATTAGAATTCCTTCTCTCTTGGTTCTTGGACGAAGTATCGAACTTGTCAAA
64 AAAAACTTTTTTACATGAGAATTCTTTCTCTCTTGGTTCTTGGACGAACTATCGAACATGTCAAA
* * ** *
2811 CATTTACTAGTTCTTTTACAACTTCGATTCCTGAGAGTAGCCAAGATGATCCATTCCTTCGACCA
129 CATTTACAAGTTCTTTTATAACTTCGATTCCTGAGAGTATTCAAGACGATCCATTCCTTCGACCA
*
2876 ATTTTTCGAGCATTACATGATCA
194 ATTTTTCGAGCATTCCATGATCA
* * * * *
2899 GGAAATCGTATCATTTGGTCTAAAGAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAA
1 GGAAATCGTATCATTTGGTATAAATAGTTTGACATTTTGTAAATAAATTTTGGTCTTTGAA
2960 CTGGTTAAAC
Statistics
Matches: 748, Mismatches: 153, Indels: 43
0.79 0.16 0.05
Matches are distributed among these distances:
213 6 0.01
214 146 0.20
215 226 0.30
216 365 0.49
217 5 0.01
ACGTcount: A:0.28, C:0.17, G:0.15, T:0.40
Consensus pattern (216 bp):
GGAAATCGTATCATTTGGTATAAATAGTTTGACATTTTGTAAATAAATTTTGGTCTTTGAATTAA
AAACTTTTTTACATGAGAATTCTTTCTCTCTTGGTTCTTGGACGAACTATCGAACATGTCAAACA
TTTACAAGTTCTTTTATAACTTCGATTCCTGAGAGTATTCAAGACGATCCATTCCTTCGACCAAT
TTTTCGAGCATTCCATGATCA
Found at i:3624 original size:559 final size:564
Alignment explanation
Indices: 2516--4107 Score: 2289
Period size: 589 Copynumber: 2.8 Consensus size: 564
2506 TGTATACAAT
2516 TTTTAGTCTTTGAATTAAATACTTATTTACGTGAGAATTATTTCCCTCTTGGTTCTTGGACGAAC
1 TTTTAGTCTTTGAATTAAATACTTATTTACGTGAGAATTATTTCCCTCTTGGTTCTTGGACGAAC
2581 ATATGAACTAGTCAAACTTTTACAAGTTCTTTTATAACTTCGATTCCTGAGAGTATTCAAGACGA
66 ATATGAACTAGTCAAACTTTTACAAGTTCTTTTATAACTTCGATTCCTGAGAGTATTCAAGACGA
*
2646 TCCATTCCTTTGACCAATTTTTTGAAGATTCCATTATAGACAAATCGCTGCAGTTGGAAAAAATA
131 TCCATTTCTTTGACCAATTTTTTGAAGATTCCATTATAGACAAATCGCTGCAGTTGGAAAAAATA
*
2711 GTTTGCCATCTGTAAATAAATTTTGGTCTTTGAATTAAAAAC-TTTTTACATTAGAATTCCTTCT
196 GTTTGCCATTTGTAAATAAATTTTGGTCTTTGAATTAAAAACTTTTTTACATTAGAATTCCTTCT
2775 CTCTTGGTTCTTGGACGAAGTATCGAACTTGTCAAACATTTACTAGTTCTTTTACAACTTCGATT
261 CTCTTGGTTCTTGGACGAAGTATCGAACTTGTCAAACATTTACTAGTTCTTTTACAACTTCGATT
2840 CCTGAGAGTAGCCAAGATGATCCATTCCTTCGACCAATTTTTCGAGCATTACATGATCAGGAAAT
326 CCTGAGAGTAGCCAAGATGATCCATTCCTTCGACCAATTTTTCGAGCATTACATGATCAGGAAAT
2905 CGTATCATTTGGTCTAAAGAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAACTGGTTAAAC
391 CGTATCATTTGGTCTAAAGAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAACTGGTTAAAC
2970 ATTTACGAGTTGTTTCATAACTTCGATTCCTGAGAGTATTAAAGGCGATCCATTCCTTCAGCCAA
456 ATTTACGAGTTGTTTCATAACTTCGATTCCTGAGAGTATTAAAGGCGATCCATTCCTTCAGCCAA
*
3035 TTTTTCGAACATTCCATGCCCGGGAAATCGCTTC-G-TTT-G-A
521 TTTTTCGAAAATTCCATGCCCGGGAAATCGCTTCTGTTTTCGAA
**************************************************
3075 -TNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCTTGGACGAAC
1 TTTTAGTCTTTGAATTAAATACTTATTTACGTGAGAATTATTTCCCTCTTGGTTCTTGGACGAAC
3139 ATATGAACTAGTCAAACTTTTACAAGTTCTTTTATAACTTCGATTCCTGAGAGTATTCAAGACGA
66 ATATGAACTAGTCAAACTTTTACAAGTTCTTTTATAACTTCGATTCCTGAGAGTATTCAAGACGA
3204 TCCATTTCTTTGACCAATTTTTTGAAGATTCCATTATAGACAAATCGCTGCAGTTGGAAAAAATA
131 TCCATTTCTTTGACCAATTTTTTGAAGATTCCATTATAGACAAATCGCTGCAGTTGGAAAAAATA
3269 GTTTGCCATTTGTAAATAAATTTTGGTCTTTGAATTAAAAACTTTTTTACATTAGAATTCCTTCT
196 GTTTGCCATTTGTAAATAAATTTTGGTCTTTGAATTAAAAACTTTTTTACATTAGAATTCCTTCT
3334 CTCTTGGTTCTTGGACGAAGTATCGAACTTGTCAAACATTTACTAGTTCTTTTACAACTTCGATT
261 CTCTTGGTTCTTGGACGAAGTATCGAACTTGTCAAACATTTACTAGTTCTTTTACAACTTCGATT
*
3399 CCTGAGAGTAGCCAAGATGATCCATTCCTTCGACCAATTTTTCAAGCATTACATGATCAGGAAAT
326 CCTGAGAGTAGCCAAGATGATCCATTCCTTCGACCAATTTTTCGAGCATTACATGATCAGGAAAT
*
3464 CGTATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAACTGGTTAAAC
391 CGTATCATTTGGTCTAAAGAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAACTGGTTAAAC
*
3529 ATTTACGAGTTGTTTTATAACTTCGATTCCTGAGAGTATTAAAGGCGATCCATTCCTTCAGCCAA
456 ATTTACGAGTTGTTTCATAACTTCGATTCCTGAGAGTATTAAAGGCGATCCATTCCTTCAGCCAA
3594 TTTTTCGAAAATTCCATGCCCGGGAAATCGCTTCGTTTGATTTAAATAGTTTATCATTTCGTATA
521 TTTTTCGAAAATTCCATGCCCGGGAAATCGCTTC------------T-G----T--TTTCG----
3659 CAA
563 -AA
*
3662 TTTTTAGTCTTTGAATTAAATACTTATTTACGTGAGAATTATTTCCCTCTTGGTTCTTGGACCAA
1 -TTTTAGTCTTTGAATTAAATACTTATTTACGTGAGAATTATTTCCCTCTTGGTTCTTGGACGAA
*
3727 CATATGAACTAGTCAAACTTTTACAAGTTCTTTTATAACTTCGGTTCCTGAGAGTATTCAAGACG
65 CATATGAACTAGTCAAACTTTTACAAGTTCTTTTATAACTTCGATTCCTGAGAGTATTCAAGACG
* * * *
3792 ATCCATTTCTTTGACCAATTTTTTGAAGATTCCATTATAGAGAAATCGCAG-ATTTTGGTAAAAA
130 ATCCATTTCTTTGACCAATTTTTTGAAGATTCCATTATAGACAAATCGCTGCA-GTTGGAAAAAA
*
3856 TAGTTTGCCATTTGTAAATAAATTTTGGTCTTTGAATTAAAAACTTTTTTACATTAGAATTCTTT
194 TAGTTTGCCATTTGTAAATAAATTTTGGTCTTTGAATTAAAAACTTTTTTACATTAGAATTCCTT
*
3921 CTCTCTTGGTTCTTGGATGAAGTATCGAACTTGTCAAACATTTACTAGTTCTTTTACAACTTCGA
259 CTCTCTTGGTTCTTGGACGAAGTATCGAACTTGTCAAACATTTACTAGTTCTTTTACAACTTCGA
* *
3986 TTCCTAAGAGTAGCCAAGATGATCCATTCCTTCGACCAATTTTTCGAGCATTCCATGATCAGGAA
324 TTCCTGAGAGTAGCCAAGATGATCCATTCCTTCGACCAATTTTTCGAGCATTACATGATCAGGAA
* *
4051 ATCGTATCATTTGGTCTAAAGAGTTTGTCATTTTGTAAAAAACTTTTAGTCTTTGAA
389 ATCGTATCATTTGGTCTAAAGAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAA
4108 TTAAAAACTT
Statistics
Matches: 881, Mismatches: 120, Indels: 34
0.85 0.12 0.03
Matches are distributed among these distances:
558 184 0.21
559 312 0.35
573 1 0.00
580 3 0.00
581 1 0.00
587 1 0.00
588 1 0.00
589 378 0.43
ACGTcount: A:0.28, C:0.17, G:0.15, T:0.37
Consensus pattern (564 bp):
TTTTAGTCTTTGAATTAAATACTTATTTACGTGAGAATTATTTCCCTCTTGGTTCTTGGACGAAC
ATATGAACTAGTCAAACTTTTACAAGTTCTTTTATAACTTCGATTCCTGAGAGTATTCAAGACGA
TCCATTTCTTTGACCAATTTTTTGAAGATTCCATTATAGACAAATCGCTGCAGTTGGAAAAAATA
GTTTGCCATTTGTAAATAAATTTTGGTCTTTGAATTAAAAACTTTTTTACATTAGAATTCCTTCT
CTCTTGGTTCTTGGACGAAGTATCGAACTTGTCAAACATTTACTAGTTCTTTTACAACTTCGATT
CCTGAGAGTAGCCAAGATGATCCATTCCTTCGACCAATTTTTCGAGCATTACATGATCAGGAAAT
CGTATCATTTGGTCTAAAGAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAACTGGTTAAAC
ATTTACGAGTTGTTTCATAACTTCGATTCCTGAGAGTATTAAAGGCGATCCATTCCTTCAGCCAA
TTTTTCGAAAATTCCATGCCCGGGAAATCGCTTCTGTTTTCGAA
Found at i:3651 original size:158 final size:158
Alignment explanation
Indices: 3358--3676 Score: 383
Period size: 158 Copynumber: 2.0 Consensus size: 158
3348 ACGAAGTATC
* * * *
3358 GAACTTGTCAAACATTTACTAGTTCTTTTACAACTTCGATTCCTGAGAGTAGCCAAGATGATCCA
1 GAACTGGTCAAACATTTACGAGTTCTTTTACAACTTCGATTCCTGAGAGTAGCAAAGACGATCCA
* * *
3423 TTCCTTCGACCAATTTTTCAAGCATTACATGATCAGGAAATCGTATCATTTGGTCTAAATAGTTT
66 TTCCTTCGACCAATTTTTCAAGAATTACATGACCAGGAAATCGTATCATTTGATCTAAATAGTTT
* * *
3488 GTCATTTTGTAAACAACTTTTGGTCTTT
131 ATCATTTCGTAAACAACTTTTAGTCTTT
* * * ** *
3516 GAACTGGTTAAACATTTACGAGTTGTTTTATAACTTCGATTCCTGAGAGTATTAAAGGCGATCCA
1 GAACTGGTCAAACATTTACGAGTTCTTTTACAACTTCGATTCCTGAGAGTAGCAAAGACGATCCA
* * * * *
3581 TTCCTTC-AGCCAATTTTTCGAA-AATTCCATGCCCGGGAAATCGCT-TCGTTTGATTTAAATAG
66 TTCCTTCGA-CCAATTTTTC-AAGAATTACATGACCAGGAAATCG-TATCATTTGATCTAAATAG
* *
3643 TTTATCATTTCGTATACAATTTTTAGTCTTT
128 TTTATCATTTCGTAAACAACTTTTAGTCTTT
3674 GAA
1 GAA
3677 TTAAATACTT
Statistics
Matches: 135, Mismatches: 23, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
157 1 0.01
158 131 0.97
159 3 0.02
ACGTcount: A:0.28, C:0.18, G:0.15, T:0.38
Consensus pattern (158 bp):
GAACTGGTCAAACATTTACGAGTTCTTTTACAACTTCGATTCCTGAGAGTAGCAAAGACGATCCA
TTCCTTCGACCAATTTTTCAAGAATTACATGACCAGGAAATCGTATCATTTGATCTAAATAGTTT
ATCATTTCGTAAACAACTTTTAGTCTTT
Found at i:4178 original size:216 final size:216
Alignment explanation
Indices: 3515--4540 Score: 1104
Period size: 216 Copynumber: 4.8 Consensus size: 216
3505 TTTTGGTCTT
* * * * *
3515 TGAACTGGTTAAACATTTACGAGTTGTTTTATAACTTCGATTCCTGAGAGTATTAAAGGCGATCC
1 TGAACTGGTCAAACATTTACGAGTTCTTTTACAACTTCGATTCCTGAGAGTATTCAAGACGATCC
** ** * * * *
3580 ATTCCTTC-AGCCAATTTTTCGAAAATTCCATGCCCGGGAAATCGCT-TCGTTTGATTTAAATAG
66 ATTCCTTCGA-CCAATTTTTCGAGCATTCCATGATCAGGAAATCG-TATCATTTGGTCTAAATAG
* * * * * *
3643 TTTATCATTTCGTATACAATTTTTAGTCTTTGAATTAAATACTTATTTACGTGAGAATTATTTCC
129 TTTGTCATTTTGTAAACAACTTTTAGTCTTTGAATTAAAAACTTATTTACGAGAGAATTATTTCC
* * *
3708 CTCTTGGTTCTTGGACCAACATA
194 CTCTTGGTTCTTGGACGAACTTC
* * * * *
3731 TGAACTAGTCAAACTTTTACAAGTTCTTTTATAACTTCGGTTCCTGAGAGTATTCAAGACGATCC
1 TGAACTGGTCAAACATTTACGAGTTCTTTTACAACTTCGATTCCTGAGAGTATTCAAGACGATCC
* * * * * * **
3796 ATTTCTTTGACCAATTTTTTGAAG-ATTCCATTAT-AGAGAAATCGCA-GATTTTGGTAAAAATA
66 ATTCCTTCGACCAATTTTTCG-AGCATTCCATGATCAG-GAAATCGTATCA-TTTGGTCTAAATA
* * * * * * *
3858 GTTTGCCA-TTTGTAAATAAATTTTGGTCTTTGAATTAAAAACTTTTTTAC-ATTAGAATTCTTT
128 GTTTGTCATTTTGTAAACAACTTTTAGTCTTTGAATTAAAAACTTATTTACGA-GAGAATTATTT
* * *
3921 CTCTCTTGGTTCTTGGATGAAGTATC
192 CCCTCTTGGTTCTTGGACGAACT-TC
* * * ** *
3947 -GAACTTGTCAAACATTTACTAGTTCTTTTACAACTTCGATTCCTAAGAGTAGCCAAGATGATCC
1 TGAACTGGTCAAACATTTACGAGTTCTTTTACAACTTCGATTCCTGAGAGTATTCAAGACGATCC
*
4011 ATTCCTTCGACCAATTTTTCGAGCATTCCATGATCAGGAAATCGTATCATTTGGTCTAAAGAGTT
66 ATTCCTTCGACCAATTTTTCGAGCATTCCATGATCAGGAAATCGTATCATTTGGTCTAAATAGTT
* * *
4076 TGTCATTTTGTAAAAAACTTTTAGTCTTTGAATTAAAAACTTTTTTACGAGAGAATTATTTCTCT
131 TGTCATTTTGTAAACAACTTTTAGTCTTTGAATTAAAAACTTATTTACGAGAGAATTATTTCCCT
4141 CTTGGTTCTTGGACGAACTTC
196 CTTGGTTCTTGGACGAACTTC
* * * *
4162 TGAACTGGTTAAACATTTACGAGTTCTTTTATAAAC-TCGATTCCTGAGAGTATTAAAGGCGATC
1 TGAACTGGTCAAACATTTACGAGTTCTTTTA-CAACTTCGATTCCTGAGAGTATTCAAGACGATC
* ** * * * *
4226 CATTCCTTC-AGCCAATTTTTCGAACATTCCATGCCCGGGAAATCGCT-TCGTTTGATTTAAATA
65 CATTCCTTCGA-CCAATTTTTCGAGCATTCCATGATCAGGAAATCG-TATCATTTGGTCTAAATA
* * * * * *
4289 GTTTATCATTTTGTATACAATTTTTAGTCTTTGAATTATATACTTATTTACGTGAGAATTATTTC
128 GTTTGTCATTTTGTAAACAACTTTTAGTCTTTGAATTAAAAACTTATTTACGAGAGAATTATTTC
* **
4354 CCTCTTGGTTCTTGGACCAAAAAGTC
193 CCTCTTGGTTCTTGGA-C-GAACTTC
* * * ** *
4380 -GAACTTGTCAAACATTTTCTAGTTCTTTTACAACTTCGATTCCTGAGAGTAGCCAAGATGATCC
1 TGAACTGGTCAAACATTTACGAGTTCTTTTACAACTTCGATTCCTGAGAGTATTCAAGACGATCC
* *
4444 ATTCCTTCGACCAATTTTTCGAGCATTACATGATCAGGAAATCGTATCATTTGGTCTAAAGAGTT
66 ATTCCTTCGACCAATTTTTCGAGCATTCCATGATCAGGAAATCGTATCATTTGGTCTAAATAGTT
*
4509 TGTCATTTTGTAAACAACTTTTGGTCTTTGAA
131 TGTCATTTTGTAAACAACTTTTAGTCTTTGAA
4541 CTGGTTAAAC
Statistics
Matches: 670, Mismatches: 119, Indels: 41
0.81 0.14 0.05
Matches are distributed among these distances:
214 2 0.00
215 173 0.26
216 352 0.53
217 138 0.21
218 5 0.01
ACGTcount: A:0.28, C:0.17, G:0.15, T:0.39
Consensus pattern (216 bp):
TGAACTGGTCAAACATTTACGAGTTCTTTTACAACTTCGATTCCTGAGAGTATTCAAGACGATCC
ATTCCTTCGACCAATTTTTCGAGCATTCCATGATCAGGAAATCGTATCATTTGGTCTAAATAGTT
TGTCATTTTGTAAACAACTTTTAGTCTTTGAATTAAAAACTTATTTACGAGAGAATTATTTCCCT
CTTGGTTCTTGGACGAACTTC
Found at i:4673 original size:158 final size:157
Alignment explanation
Indices: 4411--4697 Score: 362
Period size: 158 Copynumber: 1.8 Consensus size: 157
4401 GTTCTTTTAC
* * *
4411 AACTTCGATTCCTGAGAGTAGCCAAGATGATCCATTCCTTCGACCAATTTTTCGAGCATTACATG
1 AACTTCGATTCCTGAGAGTAGCAAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTACATG
* * ** *
4476 ATCAGGAAATCGTATCATTTGGTCTAAAGAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAA
66 ACCAGGAAATCGTATCATTTGATCTAAAGAGTTAATCATTTTGTAAA-AACTTTTAGTCTTTGAA
4541 CTGGTTAAACATTTACGAGTTGTTTCAT
130 CTGGTTAAACATTTACGAGTTGTTTCAT
** * *
4569 AACTTCGATTCCTGAGAGTATTAAAGGCGATCCATTCCTTC-AGCCAATTTTTCGAACATTCCAT
1 AACTTCGATTCCTGAGAGTAGCAAAGACGATCCATTCCTTCGA-CCAATTTTTCGAACATTACAT
* * * * * * *
4633 GCCCGGGAAATCGCT-TCGTTTGATTTAAATAGTTAATCATTTTGTATAAATTTTTAGTCTTTGA
65 GACCAGGAAATCG-TATCATTTGATCTAAAGAGTTAATCATTTTGTAAAAACTTTTAGTCTTTGA
4697 A
129 A
4698 TTAAATAATT
Statistics
Matches: 108, Mismatches: 19, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
157 16 0.15
158 91 0.84
159 1 0.01
ACGTcount: A:0.28, C:0.18, G:0.17, T:0.37
Consensus pattern (157 bp):
AACTTCGATTCCTGAGAGTAGCAAAGACGATCCATTCCTTCGACCAATTTTTCGAACATTACATG
ACCAGGAAATCGTATCATTTGATCTAAAGAGTTAATCATTTTGTAAAAACTTTTAGTCTTTGAAC
TGGTTAAACATTTACGAGTTGTTTCAT
Found at i:5196 original size:216 final size:215
Alignment explanation
Indices: 4547--8801 Score: 3038
Period size: 216 Copynumber: 19.6 Consensus size: 215
4537 TGAACTGGTT
* * * **
4547 AAACATTTACGAGTTGTTTCATAACTTCGATTCCTGAGAGTATTAAAGGCGATCCATTCCTTC-A
1 AAACATTTACGAGTTCTTTTATAACTTCGATTCCTGAGAGTATTCAAGATGATCCATTCCTTCGA
* ** * * * **
4611 GCCAATTTTTCGAACATTCCATGCCCGGGAAATCGCT-TCGTTTGATTTAAATAGTTAATCATTT
66 -CCAATTTTTCGAGCATTCCATGATCAGGAAATCG-TATCATTTGGTTTAAATAGTTTGTCATTT
* * * *
4675 TGTATA-AATTTTTAGTCTTTGAATTAAATAA-TTATTTATGTGAGAATTATTTCCCTCTTGGTT
129 TGTAAACAATTTTTAGTCTTTGAATTAAA-AACTTTTTTACGTGAGAATTATTTCTCTCTTGGTT
*
4738 CCTGGACGAACATAT-GAACTAGTC
193 CTTGGACGAAC-TATCGAAC-AGTC
* * * * * *
4762 AAACTTTTACAAGTTCTTTTATAACTTCGGTTCCTCAGAGTATTCAAGATGATCCATTTCTTTGA
1 AAACATTTACGAGTTCTTTTATAACTTCGATTCCTGAGAGTATTCAAGATGATCCATTCCTTCGA
** * * * * * ** *
4827 CCGGTTTTTTGAAG-ATTCCATTATC-GAGAAATCGCAGCATTTTGTAAAAATAGTTTGCCA-TT
66 CCAATTTTTCG-AGCATTCCATGATCAG-GAAATCGTATCATTTGGTTTAAATAGTTTGTCATTT
* * * * * *
4889 TGTAAATAAATTTTGGTCTTTGAATTAAAAAGTTTTTTACATTAGAATTATTTCTCTCTTGGTTC
129 TGTAAACAATTTTTAGTCTTTGAATTAAAAACTTTTTTACGTGAGAATTATTTCTCTCTTGGTTC
* *
4954 TTGGACGAAGTATCGAACTTGTC
194 TTGGACGAACTATCGAAC-AGTC
* * * **
4977 AAACATTTACTAGTTCTTTTAAAACTTCGATTCCTTAGAGTAGCCAAGATGATCCATTCCTTCGA
1 AAACATTTACGAGTTCTTTTATAACTTCGATTCCTGAGAGTATTCAAGATGATCCATTCCTTCGA
*
5042 CCAATTTTTCGAGCATTCCATGATCAGGAAATCGTATCATTTGGTCTAAATAGTTTGTCATTTTG
66 CCAATTTTTCGAGCATTCCATGATCAGGAAATCGTATCATTTGGTTTAAATAGTTTGTCATTTTG
* * * * * * *
5107 TAAACAACTTTTCGTCTTTGAATTAAAATCTTTTTTACGTGGGAATTGTTTCTCTGTTTGTTCTT
131 TAAACAATTTTTAGTCTTTGAATTAAAAACTTTTTTACGTGAGAATTATTTCTCTCTTGGTTCTT
*
5172 GGACGAACTTTCGAACACGTC
196 GGACGAACTATCGAACA-GTC
* * * * *
5193 AAACATTTTCGAGTTCTTTTATAAATTCGATTCCTGAGAGTATTAAAGACGATCCATTCCTTCGG
1 AAACATTTACGAGTTCTTTTATAACTTCGATTCCTGAGAGTATTCAAGATGATCCATTCCTTCGA
* ** * * * *
5258 CCAATTTTTCGAACATTCCATGCCCGGGAAATCGCT-TCGTTTGATTTAAATAGTTTATCATTTT
66 CCAATTTTTCGAGCATTCCATGATCAGGAAATCG-TATCATTTGGTTTAAATAGTTTGTCATTTT
* * * * *
5322 GTATACAATTTTTAGTCTTTGAATTATATACTTATTTACGTGAGAATTATTTCCCTCTTGGTTCT
130 GTAAACAATTTTTAGTCTTTGAATTAAAAACTTTTTTACGTGAGAATTATTTCTCTCTTGGTTCT
* ** *
5387 TGGACCAAAAAGTCGAACTTGTC
195 TGGACGAACTA-TCGAAC-AGTC
* * * **
5410 AAACATTTACTAGTTCTTTTACAACTTTGATTCCTGAGAGTAGCCAAGATGATCCATTCCTTCGA
1 AAACATTTACGAGTTCTTTTATAACTTCGATTCCTGAGAGTATTCAAGATGATCCATTCCTTCGA
* * ** *
5475 CCAATTTTTCGAGCATTCCAAGATCAGGAAATCATATCATTTGGTCCAAAGAGTTTGTCATTTTG
66 CCAATTTTTCGAGCATTCCATGATCAGGAAATCGTATCATTTGGTTTAAATAGTTTGTCATTTTG
* * * * * *
5540 TAAACAACTTTTGGTCTTTGAATAAAAAACTTTTTTATGAGAGAATTATTTGTCTCTTGGTTCTT
131 TAAACAATTTTTAGTCTTTGAATTAAAAACTTTTTTACGTGAGAATTATTTCTCTCTTGGTTCTT
* *
5605 GGACGAACT-TCTGAACTGGTT
196 GGACGAACTATC-GAAC-AGTC
* **
5626 AAACATTTTCGAGTTCTTTTATAACTTCGATTCCTGAGAGTAGCCAAGATGATCCATTCCTTCGA
1 AAACATTTACGAGTTCTTTTATAACTTCGATTCCTGAGAGTATTCAAGATGATCCATTCCTTCGA
* ** **
5691 CCAATTTTTCGTGCATTCCATGATCAGGAAATCGTATCATTTGGTCGAAATCTTTTGTCATTTTG
66 CCAATTTTTCGAGCATTCCATGATCAGGAAATCGTATCATTTGGTTTAAATAGTTTGTCATTTTG
* * * * *
5756 TAAACAACTTTTT-GTCTTTGAATTAAAAACTTTTTTATGTGGGAATTGTTTCTCTATTTGTTCT
131 TAAACAA-TTTTTAGTCTTTGAATTAAAAACTTTTTTACGTGAGAATTATTTCTCTCTTGGTTCT
* *
5820 TGGACGAACTTTAGAACACGTC
195 TGGACGAACTATCGAACA-GTC
* * *
5842 AAACATTTTCGAGTTCTTTTATAACTTCGATTCCTGAGAGTATTAAAGACGATCCATTCCTTC-A
1 AAACATTTACGAGTTCTTTTATAACTTCGATTCCTGAGAGTATTCAAGATGATCCATTCCTTCGA
* ** * * * *
5906 GCCAATTTTTCGAACATTCCATGCCCGGGAAATCGCT-TCGTTTGATTTAAATAGTTTATCATTT
66 -CCAATTTTTCGAGCATTCCATGATCAGGAAATCG-TATCATTTGGTTTAAATAGTTTGTCATTT
* * * *
5970 TGTATACAATTTTTAGTCTTTGAATTAAATACTTTTTTACGTGATAATTATTTCCCTCTTGGTTC
129 TGTAAACAATTTTTAGTCTTTGAATTAAAAACTTTTTTACGTGAGAATTATTTCTCTCTTGGTTC
*
6035 TTGGACCAACATAT-GAACTAGTC
194 TTGGACGAAC-TATCGAAC-AGTC
* * * * *
6058 AAACTTTTACAAGTTCTTTTATAACTTCGGTTCCTGAGAGTATTCAAGACT-ATCCATTTCTTTG
1 AAACATTTACGAGTTCTTTTATAACTTCGATTCCTGAGAGTATTCAAGA-TGATCCATTCCTTCG
* * * * * ** *
6122 ACCAATTTTTTGAAG-ATTCCATTATCAAGAAATCGCAGCATTTGGTAAAAATAGTTTGCCA-TT
65 ACCAATTTTTCG-AGCATTCCATGATCAGGAAATCGTATCATTTGGTTTAAATAGTTTGTCATTT
* * * * * * * *
6185 TGTAAATAAATTTTGGTCATTGAATTAGAAACTTTTTTACATTAGAATTCTTTCTCTCTTGGTTC
129 TGTAAACAATTTTTAGTCTTTGAATTAAAAACTTTTTTACGTGAGAATTATTTCTCTCTTGGTTC
* *
6250 TTGGATGAAGTATCGAACTTAG-C
194 TTGGACGAACTATCGAAC--AGTC
* ** * * ** *
6273 AAACATTTACTAGTAGTTTTACAACTTCGATTCTTGAGAGTAGCCAAGATGATCCATTCCTTCAA
1 AAACATTTACGAGTTCTTTTATAACTTCGATTCCTGAGAGTATTCAAGATGATCCATTCCTTCGA
* * *
6338 CCAATTTTTCGAGCATTCCATGATCAAGAAATTGTATCATTTGGTCTAAATCA-TTTGTCATTTT
66 CCAATTTTTCGAGCATTCCATGATCAGGAAATCGTATCATTTGGTTTAAAT-AGTTTGTCATTTT
* * * * * * * *
6402 GTAAACAACTTTTGGTCTTTGAACTAAAAACCTTTTTACGTGGGAATTGTTTCTCTATTTGTTCT
130 GTAAACAATTTTTAGTCTTTGAATTAAAAACTTTTTTACGTGAGAATTATTTCTCTCTTGGTTCT
* **
6467 TGGACGAACTTTCGAATTGTTC
195 TGGACGAACTATCGAACAG-TC
*** * * * ** * *** *
6489 TTGGACGAAC-TTT-CGAACAC-GTTA-AACCTT---TT-C-GAG-TTCTTTTATAACTTCGATT
1 ----A--AACATTTACGAGTTCTTTTATAA-CTTCGATTCCTGAGAGTATTCAAGATGATCCATT
** ** *** * * * ***** * **
6544 CCTGAGA-GTATTAGAGACGATCCATTCCTTCATCCAATTTTTCG-AACATTCCATGCCCG-GGA
59 CCTTCGACCAATT--TTTCGA-GCATTCCATGAT-CAGGAAATCGTATCATT---TG---GTTTA
* * * * * * * **
6606 AATCGCTTCGT--TTGATT-TAAATAGTTTATCA-T-TTTGTA-T-ACAA--TTTTTA-GTCTTT
114 AATAG-TTTGTCATT--TTGTAAACAATTT-TTAGTCTTTGAATTAAAAACTTTTTTACG--TGA
* * * * * * *** *
6661 GAATTAAATACT-TATT--TACGT-GA-GAATTATTTCCCTCTTGGTTTTTGGAC
173 GAATT-ATTTCTCTCTTGGTTCTTGGACGAACTA--TCGAAC--AG----T---C
* * ** * * ** ** ** * *
6711 CAACATATGAATTAGTCAAACTTTTACAAGTTCTTTTATAACTTCG-GT-TCCTGAGA-GA---A
1 AAACAT-T-TACGAGT---TCTTTTATAA---CTTCGATTCCTGAGAGTATTC-AAGATGATCCA
*** * * *** * * **
6770 TTCAAGACGATCC-ATTTCTTTGACCAATTTTTTGA--A-G--AT--T-CCATTATAG-AGAAAT
57 TTC-CTTCGA-CCAATTT-TTCGAGC-ATTCCATGATCAGGAAATCGTATCATT-TGGTTTAAAT
* ** *
6825 CGCAGATTTTGGTAAAAATAGTTTGCCATTTGTA-AATAAATTTTGGTCTTTGAATTAAAAACTT
117 ---AG--TTT-GT---CAT--TTTG----TAA-ACAAT---TTTTAGTCTTTGAATTAAAAACTT
* * * * *
6889 TTTTACATTAGAATTCTTTCTCTCTTGGTTCTTGGACGAAATATCGAACTTGTC
163 TTTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAACTATCGAAC-AGTC
* * * ** *
6943 AAACATTTACTAGTTCTTTTACAACTTTGATTCCTGAGAGTAGCCAAGATGATCCATTCCGTCGA
1 AAACATTTACGAGTTCTTTTATAACTTCGATTCCTGAGAGTATTCAAGATGATCCATTCCTTCGA
*
7008 CCAATTTTTCGAGCATTCCATGATCAGGAAATCGTATCATTTGGTCTAAATCA-TTTGTCATTTT
66 CCAATTTTTCGAGCATTCCATGATCAGGAAATCGTATCATTTGGTTTAAAT-AGTTTGTCATTTT
* * * * * * *
7072 GTAAACAACTTTTGGTCTTTGAATTAAAAACCTTTTTACGTGGGAATTGTTTCTCTATTTGTTCT
130 GTAAACAATTTTTAGTCTTTGAATTAAAAACTTTTTTACGTGAGAATTATTTCTCTCTTGGTTCT
* *
7137 TGGACGAACTTTAGAACACGTC
195 TGGACGAACTATCGAACA-GTC
* * * *
7159 AAACATTTTCGAGTTCTTTTATAACTTCGATTCCTGAGAGTATTAAAGACGATNCATTCCTTC-A
1 AAACATTTACGAGTTCTTTTATAACTTCGATTCCTGAGAGTATTCAAGATGATCCATTCCTTCGA
* ** * * * *
7223 GCCAATTTTTCGAACATTCCATGCCCGGGAAATCGCT-TCGTTTGATTTAAATAGTTTATCATTT
66 -CCAATTTTTCGAGCATTCCATGATCAGGAAATCG-TATCATTTGGTTTAAATAGTTTGTCATTT
* * * * *
7287 TGTATACAATTTTTAGTCTTTGAATTACATATTTTTTTACGTGAGAATTATTTCCCTCTTGGTTC
129 TGTAAACAATTTTTAGTCTTTGAATTAAAAACTTTTTTACGTGAGAATTATTTCTCTCTTGGTTC
* *
7352 TTGGACCAACATAT-GAACTAGAC
194 TTGGACGAAC-TATCGAAC-AGTC
* * *
7375 AAACTTTTACAAGTTCTTTTATAACTTCGGTTCCTGAGAGTATTCAAGATGATCCATTCCTTC-A
1 AAACATTTACGAGTTCTTTTATAACTTCGATTCCTGAGAGTATTCAAGATGATCCATTCCTTCGA
* * * * * * * *
7439 GCCAATTTTTCGAACATTCCATG-CCCGTTAATTCGCT-TCGTTTGATTTAAATAGTTTATCATT
66 -CCAATTTTTCGAGCATTCCATGATCAG-GAAATCG-TATCATTTGGTTTAAATAGTTTGTCATT
* * * * *
7502 TTGTATATAATTTTTAGTCTTTGAATTAAATACTTATTTACGTGAGAATTATTTCCCTCTTGGTT
128 TTGTAAACAATTTTTAGTCTTTGAATTAAAAACTTTTTTACGTGAGAATTATTTCTCTCTTGGTT
*
7567 CTTGGACCAACATAT-GAACTAGTC
193 CTTGGACGAAC-TATCGAAC-AGTC
* * * * * *
7591 AAACNTTTACAAGTTCTTTTATAACTTCGGTTCCTGAGAGTATTCAAGACGATCCATTTCTTTGA
1 AAACATTTACGAGTTCTTTTATAACTTCGATTCCTGAGAGTATTCAAGATGATCCATTCCTTCGA
* * ** *
7656 CCAATTTTTTGAAG-ATTCCATTAT-AGAGAAATC--ACTGCATTTGGTAAAAATAGTTTGCCA-
66 CCAATTTTTCG-AGCATTCCATGATCAG-GAAATCGTA-T-CATTTGGTTTAAATAGTTTGTCAT
* * ** * * * *
7716 TTTGTAAATAAATTTCGGTCTTTGAATTAAAAACTTTTTTACATTAGAATTCTTTCTTTCTTGGT
127 TTTGTAAACAATTTTTAGTCTTTGAATTAAAAACTTTTTTACGTGAGAATTATTTCTCTCTTGGT
* * *
7781 TCTTGGACGAAGTATCTAACTTGTC
192 TCTTGGACGAACTATCGAAC-AGTC
* * **
7806 AAACATTTACTAGTTCTTTTACAACTTCGATTCCTGAGAGTAGCCAAGATGATCCATTCCTTCGA
1 AAACATTTACGAGTTCTTTTATAACTTCGATTCCTGAGAGTATTCAAGATGATCCATTCCTTCGA
** *
7871 CCAATTTTTCGAGCATTCCATGATCAGGAAATCGTATCATTTGGTCCAAAGAGTTTGTCA--TTG
66 CCAATTTTTCGAGCATTCCATGATCAGGAAATCGTATCATTTGGTTTAAATAGTTTGTCATTTTG
* * * * *
7934 TAAACAACTTTTGGTCTTCGAATTAAAAACTTTTTTACGAT-AGAATTCTTTCCCTCTTGGTTCT
131 TAAACAATTTTTAGTCTTTGAATTAAAAACTTTTTTACG-TGAGAATTATTTCTCTCTTGGTTCT
* *
7998 TGGACGAACT-TCTGAACTGGTT
195 TGGACGAACTATC-GAAC-AGTC
* * ** *
8020 AAAAATTTACGAGTTCTTTTATAACTTCGATTCCTGAGAGTATTAAAGGCGATGCATTCCTTC-A
1 AAACATTTACGAGTTCTTTTATAACTTCGATTCCTGAGAGTATTCAAGATGATCCATTCCTTCGA
* * ** * * * **
8084 GCAAATTTTTCGAACATTCCATGCCCGGGAAATCGCT-TCGTTTGATTTAAATAGTTAATCATTT
66 -CCAATTTTTCGAGCATTCCATGATCAGGAAATCG-TATCATTTGGTTTAAATAGTTTGTCATTT
* * * * * * * *
8148 TGTATACAATTTTTAGACTTCGAATTATATACTTATTTAAGTGAGAATTATTTCCCTCTTGGTTC
129 TGTAAACAATTTTTAGTCTTTGAATTAAAAACTTTTTTACGTGAGAATTATTTCTCTCTTGGTTC
* ** *
8213 TTGGACCAAAAAGTCGAACTTGTC
194 TTGGACGAACTA-TCGAAC-AGTC
* * **
8237 AAACATTTACTAGTTCTTTTACAACTTCGATTCCTGAGAGTAGCCAAGATGATCCATTCCTTCGA
1 AAACATTTACGAGTTCTTTTATAACTTCGATTCCTGAGAGTATTCAAGATGATCCATTCCTTCGA
** **
8302 CCAATTTTTCGAGCATTCCATGATCAGGAAATCGTATCATTTGGTCGAAATCTTTTGTCATTTTG
66 CCAATTTTTCGAGCATTCCATGATCAGGAAATCGTATCATTTGGTTTAAATAGTTTGTCATTTTG
* * * * *
8367 TAAACAACTTTTT-GTCTTTGAATTAAAAACTTTTTTATGTGGGAATTGTTTCTCTATTTGTTCT
131 TAAACAA-TTTTTAGTCTTTGAATTAAAAACTTTTTTACGTGAGAATTATTTCTCTCTTGGTTCT
* *
8431 TGGACGAACTTTAGAACACGTC
195 TGGACGAACTATCGAACA-GTC
* * *
8453 AAACATTTTCGAGTTCTTTTATAACTTCGATTCCTGAGAGTATTAAAGACGATCCATTCCTTC-A
1 AAACATTTACGAGTTCTTTTATAACTTCGATTCCTGAGAGTATTCAAGATGATCCATTCCTTCGA
* ** * * * *
8517 GCCAATTTTTCGAACATTCCATGCCCGGGAAATCGCT-TCGTTTGATTTAAATAGTTTATCATTT
66 -CCAATTTTTCGAGCATTCCATGATCAGGAAATCG-TATCATTTGGTTTAAATAGTTTGTCATTT
* * * *
8581 TGTATACAATTTTTAGTCTTTGAATTAAATACTTATTTACGTGAGAATTATTTCCCTCTTGGTTC
129 TGTAAACAATTTTTAGTCTTTGAATTAAAAACTTTTTTACGTGAGAATTATTTCTCTCTTGGTTC
*
8646 TTGGACCAACATAT-GAACTAGTC
194 TTGGACGAAC-TATCGAAC-AGTC
* * * * * * *
8669 AAACTTTTACAAGTTCTTTTATAACTTCGGTTCCTGAGAGTATTCAAGACGATGCATTTCTTTGA
1 AAACATTTACGAGTTCTTTTATAACTTCGATTCCTGAGAGTATTCAAGATGATCCATTCCTTCGA
* * * * ** *
8734 CCAATTTTTTGAAG-ATTCCATTAT-AGAGAAATCGCAACATTTGGTAAAAATAGTTTGCCA-TT
66 CCAATTTTTCG-AGCATTCCATGATCAG-GAAATCGTATCATTTGGTTTAAATAGTTTGTCATTT
8796 TGTAAA
129 TGTAAA
8802 TAAA
Statistics
Matches: 3199, Mismatches: 657, Indels: 368
0.76 0.16 0.09
Matches are distributed among these distances:
212 7 0.00
213 17 0.01
214 212 0.07
215 642 0.20
216 1688 0.53
217 371 0.12
218 15 0.00
219 21 0.01
220 19 0.01
221 17 0.01
222 4 0.00
223 7 0.00
224 12 0.00
225 9 0.00
226 14 0.00
227 19 0.01
228 18 0.01
229 18 0.01
230 9 0.00
231 8 0.00
232 13 0.00
233 4 0.00
234 11 0.00
235 6 0.00
236 1 0.00
237 6 0.00
238 10 0.00
239 8 0.00
240 6 0.00
241 2 0.00
242 5 0.00
ACGTcount: A:0.28, C:0.17, G:0.15, T:0.40
Consensus pattern (215 bp):
AAACATTTACGAGTTCTTTTATAACTTCGATTCCTGAGAGTATTCAAGATGATCCATTCCTTCGA
CCAATTTTTCGAGCATTCCATGATCAGGAAATCGTATCATTTGGTTTAAATAGTTTGTCATTTTG
TAAACAATTTTTAGTCTTTGAATTAAAAACTTTTTTACGTGAGAATTATTTCTCTCTTGGTTCTT
GGACGAACTATCGAACAGTC
Found at i:6486 original size:23 final size:23
Alignment explanation
Indices: 6460--6505 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
6450 GTTTCTCTAT
6460 TTGTTCTTGGACGAACTTTCGAA
1 TTGTTCTTGGACGAACTTTCGAA
6483 TTGTTCTTGGACGAACTTTCGAA
1 TTGTTCTTGGACGAACTTTCGAA
6506 CACGTTAAAC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.22, C:0.17, G:0.22, T:0.39
Consensus pattern (23 bp):
TTGTTCTTGGACGAACTTTCGAA
Found at i:7722 original size:647 final size:645
Alignment explanation
Indices: 4547--8805 Score: 5745
Period size: 647 Copynumber: 6.5 Consensus size: 645
4537 TGAACTGGTT
* * * *
4547 AAACATTTACGAGTTGTTTCATAACTTCGATTCCTGAGAGTATTAAAGGCGATCCATTCCTTCAG
1 AAACATTTTCGAGTTCTTTTATAACTTCGATTCCTGAGAGTATTAAAGACGATCCATTCCTTCAG
*
4612 CCAATTTTTCGAACATTCCATGCCCGGGAAATCGCTTCGTTTGATTTAAATAGTTAATCATTTTG
66 CCAATTTTTCGAACATTCCATGCCCGGGAAATCGCTTCGTTTGATTTAAATAGTTTATCATTTTG
* * *
4677 TATA-AATTTTTAGTCTTTGAATTAAATAATTATTTATGTGAGAATTATTTCCCTCTTGGTTCCT
131 TATACAATTTTTAGTCTTTGAATTAAATACTTATTTACGTGAGAATTATTTCCCTCTTGGTTCTT
* *
4741 GGACGAACATATGAACTAGTCAAACTTTTACAAGTTCTTTTATAACTTCGGTTCCTCAGAGTATT
196 GGACCAACATATGAACTAGTCAAACTTTTACAAGTTCTTTTATAACTTCGGTTCCTGAGAGTATT
** * * *
4806 CAAGATGATCCATTTCTTTGACCGGTTTTTTGAAGATTCCATTATCGAGAAATCGCAGCATTTTG
261 CAAGATGATCCATTTCTTTGACCAATTTTTTGAAGATTCCATGACCGAGAAATCGCAGCATTTGG
* *
4871 TAAAAATAGTTTGCCATTTGTAAATAAATTTTGGTCTTTGAATTAAAAAGTTTTTTACATTAGAA
326 TAAAAATAGTTTGCCATTTGTAAATAAATTTTGGTCTTTGAATTAAAAACTTTTTTACATGAGAA
* *
4936 TTATTTCTCTCTTGGTTCTTGGACGAAGTATCGAACTTGTCAAACATTTACTAGTTCTTTTAAAA
391 TTATTTCTCTCTTGGTTCTTGGACGAAATATCGAACTTGTCAAACATTTACTAGTTCTTTTACAA
*
5001 CTTCGATTCCTTAGAGTAGCCAAGATGATCCATTCCTTCGACCAATTTTTCGAGCATTCCATGAT
456 CTTCGATTCCTGAGAGTAGCCAAGATGATCCATTCCTTCGACCAATTTTTCGAGCATTCCATGAT
*
5066 CAGGAAATCGTATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTCGTCTTTGAATT
521 CAGGAAATCG-ATCATTTGGTCTAAATA-TTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATT
* * *
5131 AAAATCTTTTTTACGTGGGAATTGTTTCTCTGTTTGTTCTTGGACGAACTTTCGAACACGTC
584 AAAAACTTTTTTACGTGGGAATTGTTTCTCTATTTGTTCTTGGACGAACTTTAGAACACGTC
* *
5193 AAACATTTTCGAGTTCTTTTATAAATTCGATTCCTGAGAGTATTAAAGACGATCCATTCCTTCGG
1 AAACATTTTCGAGTTCTTTTATAACTTCGATTCCTGAGAGTATTAAAGACGATCCATTCCTTCAG
5258 CCAATTTTTCGAACATTCCATGCCCGGGAAATCGCTTCGTTTGATTTAAATAGTTTATCATTTTG
66 CCAATTTTTCGAACATTCCATGCCCGGGAAATCGCTTCGTTTGATTTAAATAGTTTATCATTTTG
*
5323 TATACAATTTTTAGTCTTTGAATTATATACTTATTTACGTGAGAATTATTTCCCTCTTGGTTCTT
131 TATACAATTTTTAGTCTTTGAATTAAATACTTATTTACGTGAGAATTATTTCCCTCTTGGTTCTT
* * * * * * *
5388 GGACCAA-AAAGTCGAACTTGTCAAACATTTACTAGTTCTTTTACAACTTTGATTCCTGAGAGTA
196 GGACCAACATA-T-GAACTAGTCAAACTTTTACAAGTTCTTTTATAACTTCGGTTCCTGAGAGTA
** * * * * * ** *
5452 GCCAAGATGATCCATTCCTTCGACCAATTTTTCG-AGCATTCCAAGATC-AGGAAATCATATCAT
259 TTCAAGATGATCCATTTCTTTGACCAATTTTTTGAAG-ATTCCATGACCGA-GAAATCGCAGCAT
** * * * * * *
5515 TTGGTCCAAAGAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATAAAAAACTTTTTTATGA
322 TTGGTAAAAATAGTTTGCCA-TTTGTAAATAAATTTTGGTCTTTGAATTAAAAACTTTTTTA-CA
* * * * * *
5580 -GAGAATTATTTGTCTCTTGGTTCTTGGACGAACT-TCTGAACTGGTTAAACATTTTCGAGTTCT
385 TGAGAATTATTTCTCTCTTGGTTCTTGGACGAAATATC-GAACTTGTCAAACATTTACTAGTTCT
* *
5643 TTTATAACTTCGATTCCTGAGAGTAGCCAAGATGATCCATTCCTTCGACCAATTTTTCGTGCATT
449 TTTACAACTTCGATTCCTGAGAGTAGCCAAGATGATCCATTCCTTCGACCAATTTTTCGAGCATT
* * *
5708 CCATGATCAGGAAATCGTATCATTTGGTCGAAATCTTTTGTCATTTTGTAAACAACTTTTTGTCT
514 CCATGATCAGGAAATCG-ATCATTTGGTCTAAAT-ATTTGTCATTTTGTAAACAACTTTTGGTCT
*
5773 TTGAATTAAAAACTTTTTTATGTGGGAATTGTTTCTCTATTTGTTCTTGGACGAACTTTAGAACA
577 TTGAATTAAAAACTTTTTTACGTGGGAATTGTTTCTCTATTTGTTCTTGGACGAACTTTAGAACA
5838 CGTC
642 CGTC
5842 AAACATTTTCGAGTTCTTTTATAACTTCGATTCCTGAGAGTATTAAAGACGATCCATTCCTTCAG
1 AAACATTTTCGAGTTCTTTTATAACTTCGATTCCTGAGAGTATTAAAGACGATCCATTCCTTCAG
5907 CCAATTTTTCGAACATTCCATGCCCGGGAAATCGCTTCGTTTGATTTAAATAGTTTATCATTTTG
66 CCAATTTTTCGAACATTCCATGCCCGGGAAATCGCTTCGTTTGATTTAAATAGTTTATCATTTTG
* *
5972 TATACAATTTTTAGTCTTTGAATTAAATACTTTTTTACGTGATAATTATTTCCCTCTTGGTTCTT
131 TATACAATTTTTAGTCTTTGAATTAAATACTTATTTACGTGAGAATTATTTCCCTCTTGGTTCTT
6037 GGACCAACATATGAACTAGTCAAACTTTTACAAGTTCTTTTATAACTTCGGTTCCTGAGAGTATT
196 GGACCAACATATGAACTAGTCAAACTTTTACAAGTTCTTTTATAACTTCGGTTCCTGAGAGTATT
* * *
6102 CAAGACT-ATCCATTTCTTTGACCAATTTTTTGAAGATTCCATTATCAAGAAATCGCAGCATTTG
261 CAAGA-TGATCCATTTCTTTGACCAATTTTTTGAAGATTCCATGACCGAGAAATCGCAGCATTTG
* * *
6166 GTAAAAATAGTTTGCCATTTGTAAATAAATTTTGGTCATTGAATTAGAAACTTTTTTACATTAGA
325 GTAAAAATAGTTTGCCATTTGTAAATAAATTTTGGTCTTTGAATTAAAAACTTTTTTACATGAGA
* * * **
6231 ATTCTTTCTCTCTTGGTTCTTGGATGAAGTATCGAACTTAG-CAAACATTTACTAGTAGTTTTAC
390 ATTATTTCTCTCTTGGTTCTTGGACGAAATATCGAACTT-GTCAAACATTTACTAGTTCTTTTAC
* *
6295 AACTTCGATTCTTGAGAGTAGCCAAGATGATCCATTCCTTCAACCAATTTTTCGAGCATTCCATG
454 AACTTCGATTCCTGAGAGTAGCCAAGATGATCCATTCCTTCGACCAATTTTTCGAGCATTCCATG
* *
6360 ATCAAGAAATTGTATCATTTGGTCTAAATCATTTGTCATTTTGTAAACAACTTTTGGTCTTTGAA
519 ATCAGGAAATCG-ATCATTTGGTCTAAAT-ATTTGTCATTTTGTAAACAACTTTTGGTCTTTGAA
* * *
6425 CTAAAAACCTTTTTACGTGGGAATTGTTTCTCTATTTGTTCTTGGACGAACTTTCGAATTGTTCT
582 TTAAAAACTTTTTTACGTGGGAATTGTTTCTCTATTTGTTCTTGGACGAACTTTAGAA-----C-
6490 TGGACGAACTTTC
641 ---ACG-----TC
*
6503 GAACACGTTAAACCTTTTCGAGTTCTTTTATAACTTCGATTCCTGAGAGTATTAGAGACGATCCA
1 -AA-AC-----A--TTTTCGAGTTCTTTTATAACTTCGATTCCTGAGAGTATTAAAGACGATCCA
*
6568 TTCCTTCATCCAATTTTTCGAACATTCCATGCCCGGGAAATCGCTTCGTTTGATTTAAATAGTTT
57 TTCCTTCAGCCAATTTTTCGAACATTCCATGCCCGGGAAATCGCTTCGTTTGATTTAAATAGTTT
6633 ATCATTTTGTATACAATTTTTAGTCTTTGAATTAAATACTTATTTACGTGAGAATTATTTCCCTC
122 ATCATTTTGTATACAATTTTTAGTCTTTGAATTAAATACTTATTTACGTGAGAATTATTTCCCTC
* *
6698 TTGGTTTTTGGACCAACATATGAATTAGTCAAACTTTTACAAGTTCTTTTATAACTTCGGTTCCT
187 TTGGTTCTTGGACCAACATATGAACTAGTCAAACTTTTACAAGTTCTTTTATAACTTCGGTTCCT
* * * **
6763 GAGAGAATTCAAGACGATCCATTTCTTTGACCAATTTTTTGAAGATTCCATTATAGAGAAATCGC
252 GAGAGTATTCAAGATGATCCATTTCTTTGACCAATTTTTTGAAGATTCCATGACCGAGAAATCGC
6828 AG-ATTTTGGTAAAAATAGTTTGCCATTTGTAAATAAATTTTGGTCTTTGAATTAAAAACTTTTT
317 AGCA-TTTGGTAAAAATAGTTTGCCATTTGTAAATAAATTTTGGTCTTTGAATTAAAAACTTTTT
* *
6892 TACATTAGAATTCTTTCTCTCTTGGTTCTTGGACGAAATATCGAACTTGTCAAACATTTACTAGT
381 TACATGAGAATTATTTCTCTCTTGGTTCTTGGACGAAATATCGAACTTGTCAAACATTTACTAGT
* *
6957 TCTTTTACAACTTTGATTCCTGAGAGTAGCCAAGATGATCCATTCCGTCGACCAATTTTTCGAGC
446 TCTTTTACAACTTCGATTCCTGAGAGTAGCCAAGATGATCCATTCCTTCGACCAATTTTTCGAGC
7022 ATTCCATGATCAGGAAATCGTATCATTTGGTCTAAATCATTTGTCATTTTGTAAACAACTTTTGG
511 ATTCCATGATCAGGAAATCG-ATCATTTGGTCTAAAT-ATTTGTCATTTTGTAAACAACTTTTGG
*
7087 TCTTTGAATTAAAAACCTTTTTACGTGGGAATTGTTTCTCTATTTGTTCTTGGACGAACTTTAGA
574 TCTTTGAATTAAAAACTTTTTTACGTGGGAATTGTTTCTCTATTTGTTCTTGGACGAACTTTAGA
7152 ACACGTC
639 ACACGTC
*
7159 AAACATTTTCGAGTTCTTTTATAACTTCGATTCCTGAGAGTATTAAAGACGATNCATTCCTTCAG
1 AAACATTTTCGAGTTCTTTTATAACTTCGATTCCTGAGAGTATTAAAGACGATCCATTCCTTCAG
7224 CCAATTTTTCGAACATTCCATGCCCGGGAAATCGCTTCGTTTGATTTAAATAGTTTATCATTTTG
66 CCAATTTTTCGAACATTCCATGCCCGGGAAATCGCTTCGTTTGATTTAAATAGTTTATCATTTTG
* * *
7289 TATACAATTTTTAGTCTTTGAATTACATATTTTTTTACGTGAGAATTATTTCCCTCTTGGTTCTT
131 TATACAATTTTTAGTCTTTGAATTAAATACTTATTTACGTGAGAATTATTTCCCTCTTGGTTCTT
*
7354 GGACCAACATATGAACTAGACAAACTTTTACAAGTTCTTTTATAACTTCGGTTCCTGAGAGTATT
196 GGACCAACATATGAACTAGTCAAACTTTTACAAGTTCTTTTATAACTTCGGTTCCTGAGAGTATT
* * * * * ** * ** *
7419 CAAGATGATCCA-TTCCTTCAGCCAATTTTTCGAACATTCCATGCCCGTTAATTCGCTTCGTTTG
261 CAAGATGATCCATTTCTTTGA-CCAATTTTTTGAAGATTCCATGACCGAGAAATCGCAGCATTTG
* ** ** * * * * * *
7483 ATTTAAATAGTTTATCATTTTGTATATAATTTTTAGTCTTTGAATTAAATACTTATTTACGTGAG
325 GTAAAAATAGTTTGCCA-TTTGTAAATAAATTTTGGTCTTTGAATTAAAAACTTTTTTACATGAG
* * * * *
7548 AATTATTTCCCTCTTGGTTCTTGGACCAACATAT-GAACTAGTCAAACNTTTACAAGTTCTTTTA
389 AATTATTTCTCTCTTGGTTCTTGGACGAA-ATATCGAACTTGTCAAACATTTACTAGTTCTTTTA
* * ** * * * *
7612 TAACTTCGGTTCCTGAGAGTATTCAAGACGATCCATTTCTTTGACCAATTTTTTGAAG-ATTCCA
453 CAACTTCGATTCCTGAGAGTAGCCAAGATGATCCATTCCTTCGACCAATTTTTCG-AGCATTCCA
* ** * * * *
7676 TTAT-AGAGAAATC-ACTGCATTTGGTAAAAATAGTTTGCCA-TTTGTAAATAAATTTCGGTCTT
517 TGATCAG-GAAATCGA-T-CATTTGGTCTAAATA-TTTGTCATTTTGTAAACAACTTTTGGTCTT
* ** * * * * * * ** **
7738 TGAATTAAAAACTTTTTTACATTAGAATTCTTTCTTTCTTGGTTCTTGGACGAAGTATCTAACTT
578 TGAATTAAAAACTTTTTTACGTGGGAATTGTTTCTCTATTTGTTCTTGGACGAACTTTAGAACAC
7803 GTC
643 GTC
* * * *** *
7806 AAACATTTACTAGTTCTTTTACAACTTCGATTCCTGAGAGTAGCCAAGATGATCCATTCCTTC-G
1 AAACATTTTCGAGTTCTTTTATAACTTCGATTCCTGAGAGTATTAAAGACGATCCATTCCTTCAG
* ** * * * ** * *
7870 ACCAATTTTTCGAGCATTCCATGATCAGGAAATCG-TATCATTTGGTCCAAAGAGTTTGTCA--T
66 -CCAATTTTTCGAACATTCCATGCCCGGGAAATCGCT-TCGTTTGATTTAAATAGTTTATCATTT
* * * * * * *
7932 TGTAAACAACTTTTGGTCTTCGAATTAAAAACTTTTTTACGAT-AGAATTCTTTCCCTCTTGGTT
129 TGTATACAATTTTTAGTCTTTGAATTAAATACTTATTTACG-TGAGAATTATTTCCCTCTTGGTT
* * * * * ** * *
7996 CTTGGACGAACTTCTGAACTGGTTAAAAATTTACGAGTTCTTTTATAACTTCGATTCCTGAGAGT
193 CTTGGACCAACATATGAACTAGTCAAACTTTTACAAGTTCTTTTATAACTTCGGTTCCTGAGAGT
* ** * * * * * * * * ** *
8061 ATTAAAGGCGATGCA-TTCCTTCAGCAAATTTTTCGAACATTCCATGCCCGGGAAATCGCTTCGT
258 ATTCAAGATGATCCATTTCTTTGA-CCAATTTTTTGAAGATTCCATGACCGAGAAATCGCAGCAT
* ** *** * * * * * * * * *
8125 TTGATTTAAATAGTTAATCATTTTGTATACAATTTTTAGACTTCGAATTATATACTTATTTA-AG
322 TTGGTAAAAATAGTTTGCCA-TTTGTAAATAAATTTTGGTCTTTGAATTAAAAACTTTTTTACA-
* * *
8189 TGAGAATTATTTCCCTCTTGGTTCTTGGACCAAAAAGTCGAACTTGTCAAACATTTACTAGTTCT
385 TGAGAATTATTTCTCTCTTGGTTCTTGGACGAAATA-TCGAACTTGTCAAACATTTACTAGTTCT
8254 TTTACAACTTCGATTCCTGAGAGTAGCCAAGATGATCCATTCCTTCGACCAATTTTTCGAGCATT
449 TTTACAACTTCGATTCCTGAGAGTAGCCAAGATGATCCATTCCTTCGACCAATTTTTCGAGCATT
* * *
8319 CCATGATCAGGAAATCGTATCATTTGGTCGAAATCTTTTGTCATTTTGTAAACAACTTTTTGTCT
514 CCATGATCAGGAAATCG-ATCATTTGGTCTAAAT-ATTTGTCATTTTGTAAACAACTTTTGGTCT
*
8384 TTGAATTAAAAACTTTTTTATGTGGGAATTGTTTCTCTATTTGTTCTTGGACGAACTTTAGAACA
577 TTGAATTAAAAACTTTTTTACGTGGGAATTGTTTCTCTATTTGTTCTTGGACGAACTTTAGAACA
8449 CGTC
642 CGTC
8453 AAACATTTTCGAGTTCTTTTATAACTTCGATTCCTGAGAGTATTAAAGACGATCCATTCCTTCAG
1 AAACATTTTCGAGTTCTTTTATAACTTCGATTCCTGAGAGTATTAAAGACGATCCATTCCTTCAG
8518 CCAATTTTTCGAACATTCCATGCCCGGGAAATCGCTTCGTTTGATTTAAATAGTTTATCATTTTG
66 CCAATTTTTCGAACATTCCATGCCCGGGAAATCGCTTCGTTTGATTTAAATAGTTTATCATTTTG
8583 TATACAATTTTTAGTCTTTGAATTAAATACTTATTTACGTGAGAATTATTTCCCTCTTGGTTCTT
131 TATACAATTTTTAGTCTTTGAATTAAATACTTATTTACGTGAGAATTATTTCCCTCTTGGTTCTT
8648 GGACCAACATATGAACTAGTCAAACTTTTACAAGTTCTTTTATAACTTCGGTTCCTGAGAGTATT
196 GGACCAACATATGAACTAGTCAAACTTTTACAAGTTCTTTTATAACTTCGGTTCCTGAGAGTATT
* * * ** *
8713 CAAGACGATGCATTTCTTTGACCAATTTTTTGAAGATTCCATTATAGAGAAATCGCAACATTTGG
261 CAAGATGATCCATTTCTTTGACCAATTTTTTGAAGATTCCATGACCGAGAAATCGCAGCATTTGG
8778 TAAAAATAGTTTGCCATTTGTAAATAAA
326 TAAAAATAGTTTGCCATTTGTAAATAAA
Statistics
Matches: 3189, Mismatches: 355, Indels: 136
0.87 0.10 0.04
Matches are distributed among these distances:
644 2 0.00
645 259 0.08
646 247 0.08
647 986 0.31
648 401 0.13
649 655 0.21
650 9 0.00
652 1 0.00
654 2 0.00
655 2 0.00
656 5 0.00
661 5 0.00
662 2 0.00
663 2 0.00
665 1 0.00
668 1 0.00
669 2 0.00
670 607 0.19
ACGTcount: A:0.28, C:0.17, G:0.15, T:0.40
Consensus pattern (645 bp):
AAACATTTTCGAGTTCTTTTATAACTTCGATTCCTGAGAGTATTAAAGACGATCCATTCCTTCAG
CCAATTTTTCGAACATTCCATGCCCGGGAAATCGCTTCGTTTGATTTAAATAGTTTATCATTTTG
TATACAATTTTTAGTCTTTGAATTAAATACTTATTTACGTGAGAATTATTTCCCTCTTGGTTCTT
GGACCAACATATGAACTAGTCAAACTTTTACAAGTTCTTTTATAACTTCGGTTCCTGAGAGTATT
CAAGATGATCCATTTCTTTGACCAATTTTTTGAAGATTCCATGACCGAGAAATCGCAGCATTTGG
TAAAAATAGTTTGCCATTTGTAAATAAATTTTGGTCTTTGAATTAAAAACTTTTTTACATGAGAA
TTATTTCTCTCTTGGTTCTTGGACGAAATATCGAACTTGTCAAACATTTACTAGTTCTTTTACAA
CTTCGATTCCTGAGAGTAGCCAAGATGATCCATTCCTTCGACCAATTTTTCGAGCATTCCATGAT
CAGGAAATCGATCATTTGGTCTAAATATTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAA
AAACTTTTTTACGTGGGAATTGTTTCTCTATTTGTTCTTGGACGAACTTTAGAACACGTC
Done.