Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01013429.1 Kokia drynarioides strain JFW-HI SEQ_128455, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7055
ACGTcount: A:0.36, C:0.16, G:0.15, T:0.34


Found at i:2585 original size:16 final size:16

Alignment explanation


    Indices: 2554--2598  Score: 54
    Period size: 16  Copynumber: 2.8  Consensus size: 16

       2544 GATGGCAAAA

                      **    
       2554 AATAATAAAATGACAT
          1 AATAATAAAACAACAT

                            
       2570 AATAATAAAACAACAT
          1 AATAATAAAACAACAT

               *         
       2586 AACAAATAAAACA
          1 AA-TAATAAAACA

       2599 GGGATGCAAA


Statistics
Matches: 25,  Mismatches: 3, Indels: 1
        0.86            0.10        0.03

Matches are distributed among these distances:
  16   16  0.64
  17    9  0.36

ACGTcount: A:0.69, C:0.11, G:0.02, T:0.18


Consensus pattern (16 bp):   
AATAATAAAACAACAT
Done.