genome.fa.s13441.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01013441.1 Kokia drynarioides strain JFW-HI SEQ_128467, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  236504

Tables:   1   

This is table  1  of  1  ( 82 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
142--220	34	2.4	33	80	2	95	55	7	2	34	1.42
143--218	17	4.6	16	76	9	80	55	7	2	34	1.43
533--1036	209	2.4	208	85	1	663	22	22	18	36	1.95
965--1086	48	2.5	48	80	9	133	23	26	14	35	1.94
852--1176	169	1.9	169	93	0	560	21	22	20	35	1.96
1655--1988	48	6.8	48	85	2	335	12	25	23	38	1.90
10541--10616	17	4.6	16	79	9	89	55	6	2	35	1.40
10540--10604	34	1.9	34	90	0	103	56	7	3	32	1.43
15920--16016	49	2.0	50	89	2	151	29	14	9	46	1.76
18467--19130	332	2.0	332	98	0	1274	39	10	21	27	1.86
26153--26232	6	13.7	6	74	10	76	46	2	1	50	1.23
26153--26230	17	4.5	17	79	10	86	44	2	1	51	1.23
26139--26211	24	3.0	24	75	11	78	39	2	2	54	1.29
27327--27580	59	4.2	60	77	7	241	38	23	3	35	1.72
27348--27495	30	5.0	29	75	5	136	38	24	2	35	1.67
27656--27716	28	2.1	29	87	3	88	34	26	9	29	1.88
38655--38690	3	12.0	3	100	0	72	66	0	0	33	0.92
39747--39905	29	5.4	29	71	18	107	38	24	2	33	1.69
39743--39857	29	3.9	30	78	7	112	37	24	0	37	1.62
39751--40039	59	4.9	58	75	12	220	34	24	3	36	1.73
39854--39952	30	3.3	29	72	14	94	33	26	6	34	1.81
39784--39920	30	4.7	29	71	13	84	38	26	2	32	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39842--39935	29	3.2	28	69	19	84	39	26	5	28	1.78
39854--39945	29	3.1	28	73	13	87	34	25	5	34	1.79
41454--41513	19	3.2	19	70	13	52	33	1	1	63	1.14
48554--48598	17	2.9	15	84	15	65	37	2	2	57	1.23
50494--50525	11	3.1	11	82	17	50	43	9	9	37	1.69
50494--50542	20	2.5	20	83	6	55	46	6	12	34	1.66
52723--52761	14	2.7	15	88	11	55	64	2	0	33	1.08
55827--55878	22	2.5	21	82	14	63	36	0	0	63	0.95
64879--64942	27	2.4	28	84	5	87	9	7	42	40	1.66
68843--68887	22	2.0	22	95	0	81	26	20	17	35	1.95
69666--69748	38	2.2	38	84	4	105	31	24	19	25	1.98
84208--84284	21	3.7	20	74	6	73	16	10	28	44	1.81
85893--85975	33	2.4	35	84	7	100	21	19	26	32	1.97
104649--104872	79	2.8	80	84	3	256	20	23	26	29	1.99
120975--121001	13	2.1	13	100	0	54	29	14	14	40	1.86
121623--121744	57	2.1	57	89	3	183	29	20	5	44	1.75
134329--134371	22	2.0	22	90	0	68	34	23	2	39	1.67
138385--138438	25	2.3	22	84	12	63	72	7	0	20	1.08
140394--140460	29	2.3	27	78	19	64	32	0	11	55	1.37
144523--144550	13	2.2	13	100	0	56	53	14	0	32	1.41
144988--145092	46	2.3	46	93	0	147	49	1	12	36	1.51
145028--145066	18	2.2	17	95	4	69	51	0	12	35	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
144996--145115	46	2.6	46	86	6	145	51	1	13	33	1.51
145025--145127	11	9.0	11	71	17	50	50	0	14	33	1.50
145102--145196	28	3.5	28	72	17	94	49	0	15	34	1.45
145102--145196	5	16.8	6	71	22	73	49	0	15	34	1.45
145102--145196	11	8.4	12	73	20	73	49	0	15	34	1.45
144994--145196	17	12.1	17	72	17	88	49	0	14	34	1.51
145121--145203	17	4.8	18	77	18	95	48	0	15	36	1.46
145339--145409	31	2.3	31	100	0	142	21	29	19	29	1.98
150910--150963	18	3.1	17	86	5	63	55	14	12	16	1.69
150932--150968	18	2.1	18	94	0	65	59	13	10	16	1.61
151441--151478	18	2.1	18	85	9	51	5	28	2	63	1.30
153292--153336	20	2.2	20	88	7	65	68	2	13	15	1.30
165070--165100	5	6.0	5	92	7	53	19	0	3	77	0.90
167182--167228	15	3.1	15	75	9	51	53	6	27	12	1.63
182994--183067	14	5.3	14	70	6	51	35	20	18	25	1.96
182994--183069	21	3.6	21	70	7	55	34	21	19	25	1.96
183064--183103	18	2.2	18	86	0	53	25	22	22	30	1.99
191832--191988	83	1.9	83	97	0	296	40	16	22	20	1.91
198949--199047	24	4.1	24	84	0	117	25	21	22	31	1.98
198949--199047	48	2.1	48	86	0	135	25	21	22	31	1.98
199059--199278	82	2.7	82	85	1	298	35	27	15	22	1.93
203703--203821	24	5.0	24	84	0	130	28	24	21	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
208948--208988	21	2.0	21	85	9	57	29	9	0	60	1.28
209465--209529	29	2.2	30	83	10	89	32	23	32	12	1.91
209784--209827	15	3.0	15	86	3	63	25	29	0	45	1.54
219738--219791	29	2.0	26	85	10	72	66	1	24	7	1.27
224286--224321	18	2.1	17	89	5	54	16	8	0	75	1.04
225008--225051	23	1.9	23	85	0	61	25	20	15	38	1.92
225041--225082	21	2.0	21	86	9	59	26	23	19	30	1.98
227012--227067	22	2.6	23	83	10	66	60	1	1	35	1.17
228360--228413	27	2.0	28	85	10	76	25	22	0	51	1.48
228360--228419	28	2.1	28	82	11	70	25	21	0	53	1.46
234904--234955	18	2.9	18	77	2	61	25	1	7	65	1.30
235108--235217	11	9.3	12	66	15	50	43	3	1	50	1.30
235108--235217	6	18.7	6	67	14	50	43	3	1	50	1.30
235129--235168	20	2.0	20	95	0	71	35	2	0	62	1.09
235094--235211	17	7.4	17	70	16	74	39	4	2	53	1.34
236401--236470	30	2.3	30	92	0	113	22	31	37	8	1.85

Tables:   1

The End!