genome.fa.s13444.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01013444.1 Kokia drynarioides strain JFW-HI SEQ_128470, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  131314

Tables:   1   

This is table  1  of  1  ( 82 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5438--5488	13	3.9	13	75	10	50	45	17	1	35	1.60
5604--5657	24	2.2	25	75	18	60	38	1	3	55	1.28
5826--5865	18	2.2	18	86	0	53	27	15	7	50	1.70
7764--7790	13	2.1	13	100	0	54	51	7	0	40	1.30
9692--9735	22	2.0	22	86	0	61	47	0	2	50	1.13
9711--9744	17	1.9	18	88	5	52	41	2	0	55	1.15
10332--10396	30	2.2	30	94	0	112	23	4	15	56	1.57
12723--12780	23	2.5	23	82	0	80	39	18	22	18	1.92
15416--15609	97	2.0	97	87	6	277	36	15	17	29	1.91
15733--15773	14	2.9	14	77	22	50	68	4	9	17	1.35
15733--15779	15	3.2	15	80	19	55	70	4	8	17	1.29
15912--16311	29	13.8	29	79	8	370	34	4	27	34	1.76
15937--16311	59	6.5	59	79	9	380	34	4	27	34	1.76
17481--17529	21	2.5	19	81	18	57	59	0	8	32	1.27
18127--18226	6	17.3	6	73	15	77	57	3	2	38	1.26
18127--18237	17	6.5	17	92	2	168	57	3	1	36	1.27
18651--19224	39	14.7	39	67	9	247	25	19	29	25	1.98
18732--18989	118	2.2	116	83	2	329	24	18	30	26	1.98
18732--19029	118	2.5	117	79	8	293	24	18	30	26	1.98
18862--19229	78	4.7	78	84	2	402	25	18	30	25	1.98
18651--19067	195	2.1	193	80	6	448	25	19	29	25	1.98
30279--30556	116	2.4	115	85	7	350	34	3	25	35	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30185--30583	29	13.9	28	75	13	244	33	3	27	36	1.73
30271--30596	29	11.2	30	77	12	261	33	3	26	36	1.73
30279--30556	58	4.8	57	85	8	316	34	3	25	35	1.73
31651--31681	16	1.9	16	93	0	53	32	0	0	67	0.91
31651--31694	10	4.4	10	83	11	54	34	0	0	65	0.93
31724--31770	21	2.2	21	78	17	53	61	0	6	31	1.21
32364--32429	6	11.3	6	74	18	59	56	1	3	39	1.24
32364--32458	17	5.5	17	86	5	127	57	4	2	35	1.30
32364--32458	35	2.7	35	91	0	145	57	4	2	35	1.30
35496--35533	20	1.9	20	84	10	51	44	5	18	31	1.72
36934--37166	52	4.5	52	85	3	308	23	13	25	36	1.92
37913--37959	21	2.2	21	85	7	60	31	12	23	31	1.92
46728--46753	10	2.6	10	100	0	52	57	15	19	7	1.62
55742--55780	21	1.9	21	89	5	62	12	12	7	66	1.43
58175--58226	25	2.0	27	85	14	74	76	0	17	5	0.97
58167--58224	13	4.5	13	75	18	50	75	0	20	3	0.94
58167--58225	20	3.1	19	74	16	59	76	0	20	3	0.93
61755--61802	23	2.1	23	85	14	64	31	4	0	64	1.12
61917--61988	31	2.3	31	90	0	108	47	2	15	34	1.60
64747--64780	17	2.0	17	88	0	50	23	8	11	55	1.63
66702--66753	17	3.1	17	75	5	52	34	9	15	40	1.80
76328--76389	1	62.0	1	73	0	52	87	1	11	0	0.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
76328--76383	18	3.2	18	83	16	73	87	0	12	0	0.54
76328--76390	26	2.5	26	84	10	85	85	1	12	0	0.66
76335--76388	25	2.2	25	86	6	74	87	1	11	0	0.63
76329--76388	29	2.0	31	90	9	97	86	1	11	0	0.64
77521--78043	46	11.9	45	79	7	420	34	21	16	28	1.95
77521--78027	89	5.8	89	78	9	454	33	21	15	28	1.95
77521--78044	135	4.0	133	77	8	466	33	21	16	28	1.95
78123--78667	123	4.4	123	85	3	627	36	15	23	24	1.94
80477--80529	24	2.2	24	83	16	65	33	3	3	58	1.34
81421--81461	23	1.9	21	85	14	57	24	9	4	60	1.47
85178--85314	69	2.0	69	86	0	193	33	13	22	29	1.93
93806--93852	20	2.6	18	80	12	51	31	0	2	65	1.04
93809--93878	29	2.4	28	81	11	79	37	0	1	61	1.05
100289--100400	24	4.7	24	84	0	116	27	23	19	29	1.98
100289--100400	48	2.3	48	84	0	143	27	23	19	29	1.98
101753--101815	29	2.2	30	80	8	76	26	7	28	36	1.85
101745--101873	28	4.5	29	72	7	84	33	5	28	32	1.80
101769--101879	29	3.8	28	74	7	87	36	4	27	31	1.77
101860--101997	58	2.3	59	85	9	176	42	7	18	31	1.78
101975--102242	29	9.1	29	68	20	110	33	2	24	38	1.71
101970--102242	59	4.6	59	80	11	256	33	3	24	38	1.72
102038--102238	29	6.8	29	76	8	154	35	3	22	38	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
101973--102229	30	8.7	30	71	18	157	34	3	24	38	1.71
104385--104453	17	4.0	17	83	5	77	53	5	1	39	1.34
111702--111748	19	2.4	18	80	13	58	34	2	2	61	1.20
112404--112441	8	4.6	8	96	3	67	36	0	0	63	0.95
118175--118213	18	2.2	18	86	4	53	53	0	7	38	1.30
118299--118334	18	1.9	19	88	5	56	47	0	0	52	1.00
119065--119130	20	3.3	20	74	4	71	28	0	18	53	1.45
119066--119126	19	3.2	19	73	2	59	29	0	19	50	1.48
120631--120674	22	2.0	23	82	13	56	38	6	2	52	1.41
120935--121027	17	5.4	17	78	2	96	38	2	5	53	1.36
120950--120997	23	2.1	23	84	0	60	39	2	6	52	1.39
120964--121013	23	2.2	23	82	13	59	38	2	6	54	1.37
121748--121786	13	3.0	13	84	0	51	48	2	0	48	1.15
122793--123173	59	6.5	59	88	1	532	32	31	3	32	1.76
122793--123173	117	3.2	116	87	3	523	32	31	3	32	1.76
122793--123173	176	2.2	176	88	0	575	32	31	3	32	1.76

Tables:   1

The End!