genome.fa.s13449.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01013449.1 Kokia drynarioides strain JFW-HI SEQ_128475, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  72992

Tables:   1   

This is table  1  of  1  ( 48 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1420--1453	15	2.3	15	89	0	50	35	5	0	58	1.22
4329--4370	18	2.2	20	87	12	61	35	2	0	61	1.09
11218--11418	76	2.6	76	81	3	244	30	22	18	28	1.97
14784--14820	14	2.7	13	88	12	56	35	37	5	21	1.77
14831--14920	20	4.7	19	70	19	62	48	28	2	20	1.61
15126--15225	50	2.0	50	98	0	191	37	4	13	46	1.61
22789--22819	6	5.2	6	100	0	62	32	35	16	16	1.91
23048--23143	49	2.0	49	93	0	165	39	3	14	42	1.61
23573--23622	23	2.2	23	81	0	55	18	2	24	56	1.52
23643--23727	39	2.2	38	83	8	109	25	0	7	67	1.16
23657--23735	19	4.1	19	91	4	115	25	0	6	68	1.13
23660--23733	9	7.6	10	72	24	61	24	0	4	71	1.03
23643--23732	38	2.3	38	85	7	119	24	0	6	68	1.13
24770--24866	50	1.9	50	97	0	185	42	17	13	26	1.86
29403--29694	52	5.6	51	85	4	318	35	22	16	25	1.94
29403--29694	156	1.9	156	82	4	365	35	22	16	25	1.94
33997--34036	20	2.1	19	85	4	53	45	2	20	32	1.64
42274--42303	15	2.0	15	93	0	51	36	20	6	36	1.79
42812--42898	20	4.2	20	72	4	66	59	1	4	34	1.25
42949--42991	22	1.9	23	86	13	63	48	0	0	51	1.00
42955--43018	34	2.0	31	84	9	83	45	0	0	54	0.99
43463--43537	31	2.4	31	84	8	91	54	10	2	32	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47995--48039	18	2.5	18	100	0	90	51	11	6	31	1.63
48670--48711	14	2.9	15	79	10	52	42	4	0	52	1.22
49516--49548	3	11.0	3	100	0	66	33	0	0	66	0.92
53435--53728	98	3.0	98	83	4	378	38	16	17	27	1.91
53860--53898	15	2.6	16	84	12	55	69	2	10	17	1.28
53986--54353	29	12.6	28	75	13	273	32	3	25	38	1.72
53986--54353	58	6.3	57	79	9	332	32	3	25	38	1.72
55762--55809	16	2.9	16	84	6	60	45	0	4	50	1.21
55764--55874	17	6.4	17	74	16	84	50	2	2	44	1.30
55764--55845	38	2.1	39	84	6	105	47	1	2	48	1.22
55798--55874	34	2.3	32	86	6	100	51	3	2	41	1.34
55764--55857	6	16.0	6	72	20	65	48	1	3	46	1.25
56299--56427	39	3.3	38	75	13	136	28	17	27	27	1.97
56339--56469	39	3.3	39	70	14	108	30	13	25	30	1.94
56270--56956	78	8.8	78	80	3	585	25	19	29	25	1.98
56492--56900	39	10.5	38	73	9	290	24	19	33	22	1.97
56916--57007	39	2.4	39	79	3	105	27	18	29	25	1.98
66373--66665	99	3.0	99	85	3	398	37	15	18	29	1.91
66792--66823	13	2.3	15	89	10	50	71	0	12	15	1.14
66932--67360	29	14.8	29	78	8	331	38	2	23	36	1.68
66957--67350	86	4.6	85	78	8	368	38	2	23	35	1.69
66961--67359	144	2.8	144	81	4	466	38	2	23	36	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68878--68953	6	13.7	6	74	13	65	55	2	0	42	1.14
68878--68953	11	6.9	11	75	11	75	55	2	0	42	1.14
68876--68970	17	5.7	17	83	2	113	56	5	0	37	1.22
69406--69476	36	2.0	36	83	5	90	47	0	18	33	1.49

Tables:   1

The End!