genome.fa.s13460.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01013460.1 Kokia drynarioides strain JFW-HI SEQ_128486, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  105485

Tables:   1   

This is table  1  of  1  ( 53 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1011--1689	205	3.3	203	86	3	881	22	22	19	35	1.96
5235--5267	17	1.9	17	100	0	66	18	12	12	57	1.64
13136--13354	30	7.4	30	73	10	128	30	2	28	38	1.71
13192--13354	30	5.5	30	81	7	190	30	3	28	38	1.72
13164--13354	59	3.3	57	81	7	231	31	3	27	37	1.73
14384--14456	3	24.0	3	73	8	58	41	2	0	56	1.14
15127--15238	52	2.2	52	83	3	136	50	3	1	43	1.29
15146--15238	35	2.7	34	85	6	107	52	4	2	40	1.33
15129--15237	17	6.3	16	79	8	83	50	3	1	44	1.30
20936--21021	10	9.0	9	75	17	59	73	2	3	20	1.10
20980--21021	14	2.7	15	82	14	50	76	0	2	21	0.90
20936--21021	15	5.6	15	72	18	61	73	2	3	20	1.10
20948--21022	28	2.8	28	73	15	68	73	2	4	20	1.12
21600--21842	122	2.0	120	81	7	287	21	25	25	27	1.99
22759--22810	14	3.6	14	80	12	61	19	0	32	48	1.49
22786--22829	21	2.2	20	83	4	52	15	0	25	59	1.37
24057--24117	3	20.0	3	96	3	113	67	0	0	32	0.91
25997--26045	11	4.5	11	78	0	53	67	8	6	18	1.37
26030--26094	34	1.9	33	87	3	94	69	12	6	12	1.36
26737--26763	2	13.5	2	100	0	54	48	0	0	51	1.00
30820--30870	24	2.1	24	85	0	66	33	0	1	64	1.05
33880--34071	96	2.0	96	84	8	248	38	13	18	29	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34351--34672	29	11.0	30	74	13	255	32	5	28	33	1.80
34351--34675	59	5.6	58	79	10	258	32	5	28	33	1.80
34351--34675	146	2.2	146	84	7	419	32	5	28	33	1.80
34595--34685	29	3.1	27	74	14	83	37	3	25	34	1.72
35413--35508	45	2.1	45	100	0	192	22	15	0	61	1.34
35431--35528	45	2.2	45	84	0	124	27	16	2	54	1.53
36538--36617	17	4.7	17	85	0	97	51	2	2	43	1.28
36524--36587	17	3.1	22	70	25	66	50	3	4	42	1.39
36535--36617	6	14.5	6	69	9	57	50	2	2	44	1.28
36535--36617	11	7.2	12	69	10	57	50	2	2	44	1.28
37060--37134	29	2.5	29	82	4	87	48	14	12	25	1.78
37168--37217	2	25.0	2	95	0	73	50	6	0	44	1.26
37155--37204	20	2.5	20	93	0	82	50	12	0	38	1.40
37155--37206	22	2.4	22	100	0	104	50	11	0	38	1.39
40044--40069	12	2.2	12	100	0	52	0	15	0	84	0.62
46463--46536	32	2.3	32	85	0	103	27	14	9	48	1.75
59576--59613	15	2.4	16	82	4	51	60	0	0	39	0.97
76058--76130	31	2.4	31	95	0	128	26	13	12	47	1.78
78748--78888	67	2.1	67	98	0	273	25	11	14	48	1.76
83951--83995	19	2.4	19	76	0	54	42	2	2	53	1.25
84245--84329	33	2.8	27	76	20	71	49	0	0	50	1.00
84226--84305	37	2.2	36	82	6	97	46	0	0	53	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
84237--84329	30	2.9	31	84	9	107	48	0	0	51	1.00
84277--84344	30	2.3	29	82	7	82	48	4	1	45	1.31
86965--87666	352	2.0	352	98	0	1359	27	12	19	39	1.88
90176--90202	7	3.9	7	100	0	54	85	0	0	14	0.61
93878--93944	34	2.0	34	100	0	134	17	7	20	53	1.68
95062--95147	23	3.7	23	84	6	79	39	16	11	32	1.84
95089--95158	12	5.8	12	72	11	54	40	18	14	27	1.89
98555--98608	16	3.4	15	77	10	54	46	0	18	35	1.50
98723--98885	58	2.8	57	80	9	197	54	0	1	42	1.15

Tables:   1

The End!