Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01013462.1 Kokia drynarioides strain JFW-HI SEQ_128488, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2683
ACGTcount: A:0.40, C:0.13, G:0.11, T:0.36


Found at i:34 original size:15 final size:15

Alignment explanation


    Indices: 16--70  Score: 83
    Period size: 15  Copynumber: 3.7  Consensus size: 15

          6 TTTTGGGTAG

                           
         16 TTTGTAATTGGGCCA
          1 TTTGTAATTGGGCCA

                  *     *  
         31 TTTGTATTTGGGTCA
          1 TTTGTAATTGGGCCA

             *             
         46 TCTGTAATTGGGCCA
          1 TTTGTAATTGGGCCA

                      
         61 TTTGTAATTG
          1 TTTGTAATTG

         71 AACTTTGTTT


Statistics
Matches: 34,  Mismatches: 6, Indels: 0
        0.85            0.15        0.00

Matches are distributed among these distances:
  15   34  1.00

ACGTcount: A:0.18, C:0.11, G:0.25, T:0.45


Consensus pattern (15 bp):   
TTTGTAATTGGGCCA

Found at i:133 original size:18 final size:18

Alignment explanation


    Indices: 103--149  Score: 71
    Period size: 18  Copynumber: 2.7  Consensus size: 18

         93 ATGAACTTTC

                               
        103 TAAATTT-AATTTT-ATAA
          1 TAAATTTAAATTTTCA-AA

                              
        120 TAAATTTAAATTTTCAAA
          1 TAAATTTAAATTTTCAAA

                        
        138 TAAATTTAAATT
          1 TAAATTTAAATT

        150 CAATTTCCAT


Statistics
Matches: 28,  Mismatches: 0, Indels: 3
        0.90            0.00        0.10

Matches are distributed among these distances:
  17    7  0.25
  18   20  0.71
  19    1  0.04

ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49


Consensus pattern (18 bp):   
TAAATTTAAATTTTCAAA
Done.