Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01013464.1 Kokia drynarioides strain JFW-HI SEQ_128490, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7701
ACGTcount: A:0.33, C:0.14, G:0.18, T:0.33

Warning! 50 characters in sequence are not A, C, G, or T


Found at i:506 original size:21 final size:21

Alignment explanation


    Indices: 481--520  Score: 55
    Period size: 21  Copynumber: 1.9  Consensus size: 21

        471 TAGTTAGAAT

                                  
        481 AATATAGATGTGT-TTTAATAA
          1 AATATA-ATGTGTATTTAATAA

                  *            
        502 AATATATTGTGTATTTAAT
          1 AATATAATGTGTATTTAAT

        521 TTCATAGCTA


Statistics
Matches: 17,  Mismatches: 1, Indels: 2
        0.85            0.05        0.10

Matches are distributed among these distances:
  20    5  0.29
  21   12  0.71

ACGTcount: A:0.40, C:0.00, G:0.12, T:0.47


Consensus pattern (21 bp):   
AATATAATGTGTATTTAATAA

Found at i:2546 original size:16 final size:15

Alignment explanation


    Indices: 2525--2555  Score: 53
    Period size: 16  Copynumber: 2.0  Consensus size: 15

       2515 TAAATTTCTT

                            
       2525 TTAAAATTTTATATTA
          1 TTAAAATTTTA-ATTA

                           
       2541 TTAAAATTTTAATTA
          1 TTAAAATTTTAATTA

       2556 GAGAATCCTT


Statistics
Matches: 15,  Mismatches: 0, Indels: 1
        0.94            0.00        0.06

Matches are distributed among these distances:
  15    4  0.27
  16   11  0.73

ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55


Consensus pattern (15 bp):   
TTAAAATTTTAATTA

Found at i:6419 original size:60 final size:60

Alignment explanation


    Indices: 6326--6446  Score: 242
    Period size: 60  Copynumber: 2.0  Consensus size: 60

       6316 TTGTGGAGAA

                                                                        
       6326 AGAACTTGCATTGCTCACAACTATAAAAAGGAGTTGATATAGGTCTCGTGCACCCATCAC
          1 AGAACTTGCATTGCTCACAACTATAAAAAGGAGTTGATATAGGTCTCGTGCACCCATCAC

                                                                        
       6386 AGAACTTGCATTGCTCACAACTATAAAAAGGAGTTGATATAGGTCTCGTGCACCCATCAC
          1 AGAACTTGCATTGCTCACAACTATAAAAAGGAGTTGATATAGGTCTCGTGCACCCATCAC

             
       6446 A
          1 A

       6447 CTCAATATCA


Statistics
Matches: 61,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  60   61  1.00

ACGTcount: A:0.34, C:0.23, G:0.18, T:0.25


Consensus pattern (60 bp):   
AGAACTTGCATTGCTCACAACTATAAAAAGGAGTTGATATAGGTCTCGTGCACCCATCAC
Done.