Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01013466.1 Kokia drynarioides strain JFW-HI SEQ_128492, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 13923
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.32

Warning! 50 characters in sequence are not A, C, G, or T


Found at i:7371 original size:29 final size:30

Alignment explanation


    Indices: 7339--7400  Score: 74
    Period size: 29  Copynumber: 2.1  Consensus size: 30

       7329 ATGATACGAA

                       *            *      
       7339 TTAA-AAAAATTATTAATTTATTTTTAT-AT
          1 TTAATAAAAATAATT-ATTTATTTATATAAT

                    *                     
       7368 TTAATAAATATAATTATTTATTTATATAAT
          1 TTAATAAAAATAATTATTTATTTATATAAT

               
       7398 TTA
          1 TTA

       7401 TCAATATAAA


Statistics
Matches: 28,  Mismatches: 3, Indels: 3
        0.82            0.09        0.09

Matches are distributed among these distances:
  29   15  0.54
  30   13  0.46

ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55


Consensus pattern (30 bp):   
TTAATAAAAATAATTATTTATTTATATAAT

Found at i:7406 original size:29 final size:29

Alignment explanation


    Indices: 7354--7409  Score: 78
    Period size: 29  Copynumber: 1.9  Consensus size: 29

       7344 AAAATTATTA

                    *                    
       7354 ATTTATTTTTATATTTAATAAATATAATT
          1 ATTTATTTATATATTTAATAAATATAATT

                                *       
       7383 ATTTATTTATATAATTT-ATCAATATAA
          1 ATTTATTTATAT-ATTTAATAAATATAA

       7410 AATGATATTA


Statistics
Matches: 24,  Mismatches: 2, Indels: 2
        0.86            0.07        0.07

Matches are distributed among these distances:
  29   20  0.83
  30    4  0.17

ACGTcount: A:0.43, C:0.02, G:0.00, T:0.55


Consensus pattern (29 bp):   
ATTTATTTATATATTTAATAAATATAATT
Done.