Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01013470.1 Kokia drynarioides strain JFW-HI SEQ_128496, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4480
ACGTcount: A:0.33, C:0.18, G:0.22, T:0.27


Found at i:1245 original size:23 final size:19

Alignment explanation


    Indices: 1202--1241  Score: 80
    Period size: 19  Copynumber: 2.1  Consensus size: 19

       1192 AATAAACAAG

                               
       1202 ATTAATTATTTTTTAATAC
          1 ATTAATTATTTTTTAATAC

                               
       1221 ATTAATTATTTTTTAATAC
          1 ATTAATTATTTTTTAATAC

              
       1240 AT
          1 AT

       1242 ACATACTCAT


Statistics
Matches: 21,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  19   21  1.00

ACGTcount: A:0.38, C:0.05, G:0.00, T:0.57


Consensus pattern (19 bp):   
ATTAATTATTTTTTAATAC
Done.