genome.fa.s13471.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01013471.1 Kokia drynarioides strain JFW-HI SEQ_128497, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  179377

Tables:   1   

This is table  1  of  1  ( 94 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
81--114	4	8.8	4	87	6	52	0	20	0	79	0.73
48--114	12	5.6	11	75	19	55	0	26	0	73	0.84
724--788	31	2.1	31	88	0	94	38	15	3	43	1.62
2910--2941	3	10.7	3	93	0	55	65	3	0	31	1.08
3826--3888	24	2.6	24	87	0	90	49	11	14	25	1.76
5822--5896	24	3.1	24	83	7	89	60	10	5	24	1.51
6812--6836	6	4.2	6	100	0	50	32	0	16	52	1.44
7123--7147	13	1.9	13	100	0	50	56	0	8	36	1.29
11929--11980	18	3.1	17	72	16	54	44	11	30	13	1.79
11929--11992	15	4.1	15	75	11	56	46	10	31	10	1.74
13538--13592	28	2.0	28	96	0	101	27	12	29	30	1.93
18544--18568	5	5.0	5	100	0	50	40	0	0	60	0.97
32249--32353	25	4.1	25	92	7	183	56	19	3	20	1.57
32247--32353	53	2.0	53	100	0	214	57	18	3	20	1.56
32683--32716	6	5.7	6	100	0	68	32	67	0	0	0.91
34339--34368	15	2.0	15	93	0	51	20	3	0	76	0.92
59727--59790	17	3.7	17	87	2	92	43	1	1	53	1.19
59727--59793	6	11.5	6	71	17	52	44	1	1	52	1.19
59727--59804	34	2.3	33	80	10	86	43	2	1	52	1.23
61588--61849	30	8.8	30	80	4	219	35	27	3	33	1.73
61562--61902	89	3.8	89	78	9	302	35	27	3	33	1.74
61799--61997	58	3.4	58	78	7	215	34	28	5	31	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61710--61951	30	8.2	29	70	13	106	34	26	4	33	1.78
61829--61987	87	1.8	85	80	7	187	33	28	5	32	1.79
61829--61998	29	5.9	28	71	10	119	33	28	5	31	1.80
63625--63653	6	4.8	6	100	0	58	17	0	34	48	1.47
66981--67053	6	12.7	6	71	8	53	45	1	1	52	1.18
66981--67055	23	3.3	23	75	3	62	46	1	1	50	1.18
66981--67043	17	3.7	17	82	0	81	42	1	1	53	1.19
67754--67797	22	2.0	22	86	0	61	59	2	2	36	1.23
68810--68990	29	6.2	29	74	10	136	40	24	2	32	1.68
68790--68901	30	3.7	31	80	11	126	41	23	0	35	1.55
68829--69124	58	5.1	58	76	6	195	36	24	5	33	1.78
69034--69147	58	1.9	59	80	5	133	31	19	7	42	1.78
78952--78990	19	2.0	20	90	5	62	30	5	0	64	1.15
80311--80410	37	2.7	39	72	21	104	31	5	12	52	1.60
86633--86729	17	5.6	17	73	4	50	36	5	6	52	1.49
87439--87514	3	25.0	3	74	12	57	60	1	3	34	1.23
87439--87514	12	5.7	13	73	15	66	60	1	3	34	1.23
88558--88743	28	6.5	28	72	15	105	32	25	3	39	1.72
88588--88743	28	5.5	28	73	11	122	31	26	3	39	1.72
91701--91734	12	2.8	12	90	4	50	82	0	17	0	0.67
93472--93504	17	2.0	17	94	5	59	60	0	27	12	1.32
95116--95145	14	2.1	14	100	0	60	6	0	0	93	0.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
97900--97940	18	2.2	19	83	12	50	65	4	0	29	1.13
98850--99034	96	1.9	96	84	6	250	36	15	18	29	1.92
99296--99604	30	10.5	29	78	8	286	33	2	29	34	1.73
99296--99604	59	5.3	59	83	5	315	33	2	29	34	1.73
100161--100221	22	2.8	21	83	11	70	50	1	1	45	1.21
100990--101036	24	2.0	23	87	4	67	48	2	2	46	1.25
101003--101082	17	4.6	17	84	1	106	52	2	1	43	1.22
101000--101082	6	14.3	6	70	16	59	51	2	1	44	1.22
103071--103124	27	2.0	27	92	0	90	42	9	24	24	1.83
107350--107537	33	5.6	33	83	5	214	20	21	27	29	1.98
108913--108958	20	2.2	21	84	3	58	4	10	10	73	1.22
110369--110407	20	2.0	20	89	0	60	2	30	23	43	1.67
112322--112360	19	2.1	19	90	4	62	46	5	0	48	1.24
112334--112389	21	2.8	19	75	17	51	50	5	0	44	1.25
114920--114983	31	2.1	31	82	5	76	40	14	9	35	1.78
115811--115840	5	6.2	5	92	7	53	76	0	0	23	0.78
118262--118295	18	1.9	18	88	5	52	29	0	5	64	1.17
118421--118461	20	2.1	19	86	4	55	73	0	0	26	0.84
118383--118462	18	4.4	18	67	7	54	66	1	0	32	1.00
121068--121098	4	7.8	4	92	0	53	48	22	0	29	1.51
122262--122286	10	2.5	10	100	0	50	16	0	0	84	0.63
126899--126958	18	3.4	17	83	4	75	21	10	16	51	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
132004--132038	18	1.9	18	94	0	61	25	0	14	60	1.35
132209--132253	21	2.2	21	92	4	74	28	0	13	57	1.36
132993--133041	16	3.2	16	75	16	59	59	6	0	34	1.22
134351--134435	43	2.0	43	86	4	118	30	11	10	47	1.74
134729--134760	15	2.1	16	88	11	50	25	25	28	21	1.99
135003--135094	45	2.0	45	89	0	139	32	30	18	18	1.95
135346--135400	21	2.6	21	80	8	67	49	25	0	25	1.51
138469--138557	4	22.5	4	78	11	67	0	35	0	64	0.94
138472--138530	7	8.3	7	76	16	59	0	40	0	59	0.97
138472--138530	11	5.2	11	75	18	50	0	40	0	59	0.97
138469--138554	20	4.3	20	80	11	79	0	36	0	63	0.94
138518--138556	13	3.1	13	92	3	62	0	25	0	74	0.82
138646--138684	19	2.1	19	90	0	60	66	17	0	15	1.25
139227--139269	16	2.8	15	79	6	50	55	4	0	39	1.20
140724--140759	18	2.0	18	94	0	63	25	0	5	69	1.10
140979--141003	13	1.9	13	100	0	50	40	8	0	52	1.31
141640--141667	3	9.3	3	100	0	56	32	35	0	32	1.58
156224--156275	15	3.6	14	78	5	50	36	1	3	57	1.28
156251--156288	20	1.9	20	89	10	60	34	0	0	65	0.93
156378--156437	16	3.7	16	70	18	52	45	1	0	53	1.10
156378--156428	18	3.0	18	81	16	56	45	0	0	54	0.99
165627--165657	4	7.8	4	100	0	62	25	0	51	22	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
165949--165979	16	1.9	16	93	0	53	29	3	0	67	1.06
166239--166310	28	2.7	27	87	6	101	20	4	27	47	1.69
171800--171863	29	2.2	28	86	13	87	29	14	7	48	1.71
175060--175113	22	2.4	24	75	15	69	57	1	0	40	1.09
177121--177173	23	2.3	23	100	0	106	41	18	16	22	1.90
179290--179358	27	2.4	28	81	16	79	27	2	0	69	1.02

Tables:   1

The End!