genome.fa.s13475.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01013475.1 Kokia drynarioides strain JFW-HI SEQ_128501, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  68657

Tables:   1   

This is table  1  of  1  ( 45 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
492--561	31	2.3	31	87	2	97	15	12	25	45	1.82
487--565	15	5.3	15	78	4	79	15	11	27	45	1.80
591--656	17	3.9	16	88	5	78	51	6	0	42	1.26
1302--1486	96	1.9	96	83	6	241	35	15	20	29	1.93
1833--1969	30	4.7	29	73	15	111	35	2	25	35	1.71
1830--1969	59	2.4	59	83	4	176	35	2	27	35	1.72
1829--1966	29	4.7	30	72	16	94	35	2	26	35	1.71
2967--3010	12	3.7	12	81	0	52	40	0	0	59	0.98
2963--3013	18	2.7	18	87	9	66	39	0	0	60	0.97
2962--3013	21	2.5	21	87	3	70	38	0	0	61	0.96
3677--3769	18	5.4	17	82	8	107	53	3	1	41	1.24
3677--3769	35	2.7	34	80	8	98	53	3	1	41	1.24
15663--15853	95	2.0	95	83	9	237	36	13	20	29	1.91
16183--16681	59	8.4	59	86	3	603	30	3	30	35	1.75
16209--16672	119	3.9	119	86	3	598	31	3	30	34	1.74
16206--16672	178	2.6	179	86	4	658	30	3	30	35	1.75
17709--17750	15	2.8	15	92	0	66	26	4	11	57	1.54
18403--18470	5	12.6	5	76	11	55	57	1	2	38	1.23
18403--18467	11	5.9	11	73	18	55	55	1	3	40	1.25
30339--30364	2	13.0	2	100	0	52	0	50	0	50	1.00
31533--31641	37	2.9	37	81	8	123	35	33	19	11	1.88
32937--33007	31	2.3	31	86	11	94	50	5	5	38	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33876--33910	18	1.9	18	88	11	54	31	0	5	62	1.18
36070--36275	30	6.9	30	84	3	222	37	1	24	36	1.67
36070--36275	60	3.5	60	84	4	249	37	1	24	36	1.67
36690--36731	21	2.0	22	95	4	77	40	19	0	40	1.51
37815--37861	16	3.0	16	75	12	53	53	2	2	42	1.25
38332--38366	18	1.9	18	94	0	61	62	5	2	28	1.32
39727--39811	11	7.4	11	72	13	55	65	8	2	23	1.31
39761--39795	14	2.6	14	90	4	54	71	5	0	22	1.07
39739--39809	36	2.0	36	82	0	88	64	8	2	23	1.35
45571--45707	58	2.4	57	85	4	177	44	0	2	52	1.18
51337--51399	31	2.1	31	82	8	76	50	3	6	39	1.44
53593--53648	24	2.3	24	96	0	103	26	8	17	46	1.78
54071--54104	15	2.3	15	90	5	52	38	38	2	20	1.68
55667--55719	15	3.7	15	92	5	83	32	11	20	35	1.88
58723--59002	49	5.7	49	75	1	245	31	16	32	20	1.94
58769--59010	50	4.9	49	72	8	195	33	17	30	19	1.95
58716--59019	99	3.1	98	87	3	423	31	17	30	20	1.95
61290--61524	30	7.9	29	79	8	188	37	27	0	33	1.63
61329--61524	59	3.3	58	79	9	218	37	27	0	34	1.57
67796--67983	96	2.0	96	82	6	229	38	14	19	28	1.90
68249--68471	29	7.8	28	76	12	168	34	4	27	32	1.78
68277--68471	29	6.7	29	80	8	211	34	4	28	32	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68277--68472	58	3.4	59	85	6	258	35	4	28	32	1.78

Tables:   1

The End!