Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01013476.1 Kokia drynarioides strain JFW-HI SEQ_128502, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 83557
ACGTcount: A:0.33, C:0.16, G:0.18, T:0.33
Warning! 43 characters in sequence are not A, C, G, or T
Found at i:5125 original size:191 final size:194
Alignment explanation
Indices: 4776--5127 Score: 442
Period size: 195 Copynumber: 1.8 Consensus size: 194
4766 GATGAGGTAT
* * *
4776 CGCATATGTTACGAGTCCCCGACAGCTCGTGTGAGCAGCATCGTGAGTCGAGAAAAGAGAAAAGG
1 CGCATATGTTACGAGTCCCCGACAGCTCATGTGAGCAGCATCGTGACTAGAGAAAAGAGAAAAGG
* *
4841 ATCCAGGAATGGATTATAAGCCCTACGATGGCTGAGATTTATGCATAACTGCAAATTCTCGACAG
66 ATCCA-GAATGGATTATAAGCCCTACGATGGCTGAGATCTATGCATAACTGCAAACTCTCGACAG
*
4906 CTCGTGTGAGGAGCATTGCTAGGGAACAGTTATATGCACAAATATTGTAACGATAGCTGAGCTAC
130 CTCGTGTGAGGAGCATCGCTAGGGAACAGTTATATGCACAAATATTGTAACGATAGCTGAGCTAC
** * * * * * * *
4971 CGCATATGTTGTGAGTCCTCGATAGCTCATGTGAGTAGCATTGTGACTAG-GGAAAGAGATATGG
1 CGCATATGTTACGAGTCCCCGACAGCTCATGTGAGCAGCATCGTGACTAGAGAAAAGAGAAAAGG
* * * * * * *
5035 ATCCTA-AATGGATTATAGGCCTTACGATGGCTGGGA-CTATGCTTTA-TGCATACTCTCGATAG
66 ATCC-AGAATGGATTATAAGCCCTACGATGGCTGAGATCTATGCATAACTGCAAACTCTCGACAG
* *
5097 CTCGTGTGAGTAGCATCGTTAGGGAACAGTT
130 CTCGTGTGAGGAGCATCGCTAGGGAACAGTT
5128 TAGAGTACAG
Statistics
Matches: 132, Mismatches: 24, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
191 41 0.31
192 7 0.05
193 27 0.20
194 15 0.11
195 42 0.32
ACGTcount: A:0.29, C:0.18, G:0.27, T:0.26
Consensus pattern (194 bp):
CGCATATGTTACGAGTCCCCGACAGCTCATGTGAGCAGCATCGTGACTAGAGAAAAGAGAAAAGG
ATCCAGAATGGATTATAAGCCCTACGATGGCTGAGATCTATGCATAACTGCAAACTCTCGACAGC
TCGTGTGAGGAGCATCGCTAGGGAACAGTTATATGCACAAATATTGTAACGATAGCTGAGCTAC
Found at i:7056 original size:74 final size:74
Alignment explanation
Indices: 6972--7119 Score: 296
Period size: 74 Copynumber: 2.0 Consensus size: 74
6962 AGCCAATTTA
6972 GTAGCTTTACGATTGTTATCCCTTAGTATAGGTAGACAAAGTGAGATTAAGGACATAATAATGAA
1 GTAGCTTTACGATTGTTATCCCTTAGTATAGGTAGACAAAGTGAGATTAAGGACATAATAATGAA
7037 TTTGAAGTT
66 TTTGAAGTT
7046 GTAGCTTTACGATTGTTATCCCTTAGTATAGGTAGACAAAGTGAGATTAAGGACATAATAATGAA
1 GTAGCTTTACGATTGTTATCCCTTAGTATAGGTAGACAAAGTGAGATTAAGGACATAATAATGAA
7111 TTTGAAGTT
66 TTTGAAGTT
7120 ATAGTACTTG
Statistics
Matches: 74, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
74 74 1.00
ACGTcount: A:0.35, C:0.09, G:0.22, T:0.34
Consensus pattern (74 bp):
GTAGCTTTACGATTGTTATCCCTTAGTATAGGTAGACAAAGTGAGATTAAGGACATAATAATGAA
TTTGAAGTT
Found at i:17091 original size:15 final size:14
Alignment explanation
Indices: 17071--17120 Score: 55
Period size: 15 Copynumber: 3.4 Consensus size: 14
17061 GGATCTCCTA
17071 ATCATCATAATATCC
1 ATCATCATAATAT-C
*
17086 ATCATCAAAGATATC
1 ATCATCATA-ATATC
*
17101 ATTATCATAATCATC
1 ATCATCATAAT-ATC
17116 ATCAT
1 ATCAT
17121 ACATGAGATC
Statistics
Matches: 29, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
14 2 0.07
15 23 0.79
16 4 0.14
ACGTcount: A:0.42, C:0.22, G:0.02, T:0.34
Consensus pattern (14 bp):
ATCATCATAATATC
Found at i:20567 original size:13 final size:14
Alignment explanation
Indices: 20538--20567 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
20528 TTCAGTACAT
20538 TGACATTTAACCTC
1 TGACATTTAACCTC
20552 TGACATTTAA-CTC
1 TGACATTTAACCTC
20565 TGA
1 TGA
20568 TTGTGTTGAC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 6 0.38
14 10 0.62
ACGTcount: A:0.30, C:0.23, G:0.10, T:0.37
Consensus pattern (14 bp):
TGACATTTAACCTC
Found at i:20903 original size:15 final size:16
Alignment explanation
Indices: 20883--20915 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
20873 CTATACTAAT
20883 TTGTTTACTT-TTCTA
1 TTGTTTACTTCTTCTA
*
20898 TTGTTTTCTTCTTCTA
1 TTGTTTACTTCTTCTA
20914 TT
1 TT
20916 TTGTAGGCAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 9 0.56
16 7 0.44
ACGTcount: A:0.09, C:0.15, G:0.06, T:0.70
Consensus pattern (16 bp):
TTGTTTACTTCTTCTA
Found at i:27301 original size:17 final size:17
Alignment explanation
Indices: 27279--27314 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 17
27269 TGGCAATATA
27279 TTTCTTT-TCTTTTCTTT
1 TTTCTTTATC-TTTCTTT
27296 TTTCTTTATCTTTCTTT
1 TTTCTTTATCTTTCTTT
27313 TT
1 TT
27315 GTGAATTTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 16 0.89
18 2 0.11
ACGTcount: A:0.03, C:0.17, G:0.00, T:0.81
Consensus pattern (17 bp):
TTTCTTTATCTTTCTTT
Found at i:34915 original size:104 final size:104
Alignment explanation
Indices: 34725--34924 Score: 238
Period size: 104 Copynumber: 1.9 Consensus size: 104
34715 GGATAAAAAT
* *
34725 AAAATAATAATAAATTAGGAGTGTATTAGGCTGAGTAACCGGGATGGGGTGATTAGGTTTTCATT
1 AAAAAAATAATAAATTAGGAGTGTATTAGGCTGAGTAACCGGGATGGGGTGATTAGGTTGTCATT
* *** *
34790 CCATTTTGCATCAAAAGGGCCAATTCATTCTTAAGTAAC
66 CCACTACACATCAAAAGGGCCAATACATTCTTAAGTAAC
* * * * * * * *
34829 AAAAAAATTATAAATTGGGAGTGTGTTGGGCTGAGTAATCGGGGTGGGGTGCTTGGGTTGTCATT
1 AAAAAAATAATAAATTAGGAGTGTATTAGGCTGAGTAACCGGGATGGGGTGATTAGGTTGTCATT
* * *
34894 TCACTACACGTCAAAATGGCCAATACATTCT
66 CCACTACACATCAAAAGGGCCAATACATTCT
34925 GCAAAAAAGA
Statistics
Matches: 78, Mismatches: 18, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
104 78 1.00
ACGTcount: A:0.31, C:0.13, G:0.25, T:0.31
Consensus pattern (104 bp):
AAAAAAATAATAAATTAGGAGTGTATTAGGCTGAGTAACCGGGATGGGGTGATTAGGTTGTCATT
CCACTACACATCAAAAGGGCCAATACATTCTTAAGTAAC
Found at i:41525 original size:44 final size:44
Alignment explanation
Indices: 41462--41548 Score: 113
Period size: 44 Copynumber: 2.0 Consensus size: 44
41452 TAATTGTAAT
* * * *
41462 TTAAATTTAAGTTACTTTTAAATGTGTAGTTATCCCAACTTCTC
1 TTAAATTTAAGTTACTTTTAAATATATAATTATCACAACTTCTC
*
41506 TTAAATTATAA-TTATTTTTAAATATATAATTATCACAACTTCT
1 TTAAATT-TAAGTTACTTTTAAATATATAATTATCACAACTTCT
41549 ATTTTATTTC
Statistics
Matches: 37, Mismatches: 5, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
44 34 0.92
45 3 0.08
ACGTcount: A:0.36, C:0.13, G:0.05, T:0.47
Consensus pattern (44 bp):
TTAAATTTAAGTTACTTTTAAATATATAATTATCACAACTTCTC
Found at i:45866 original size:30 final size:30
Alignment explanation
Indices: 45787--45870 Score: 107
Period size: 30 Copynumber: 2.8 Consensus size: 30
45777 GCATGAATAG
** *
45787 TGCGAACATGAAAAGTATGAGCGTACATGT
1 TGCGAACATGAAAAGTGCGAGCATACATGT
45817 TGCGAACATGAAAAGTGCGAGCATACATGT
1 TGCGAACATGAAAAGTGCGAGCATACATGT
**
45847 TTTGAACATGAATAA-TGCGAGCAT
1 TGCGAACATGAA-AAGTGCGAGCAT
45871 GGATATTGTA
Statistics
Matches: 48, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
30 46 0.96
31 2 0.04
ACGTcount: A:0.37, C:0.14, G:0.25, T:0.24
Consensus pattern (30 bp):
TGCGAACATGAAAAGTGCGAGCATACATGT
Found at i:49986 original size:30 final size:30
Alignment explanation
Indices: 49950--50129 Score: 238
Period size: 30 Copynumber: 6.0 Consensus size: 30
49940 GAGGGAATGA
*
49950 TGCGAGCATGA-ATATTGCAAACATGAAAAG
1 TGCGAGCAT-ACATGTTGCAAACATGAAAAG
*
49980 TGCGAGCATACATGTTGCAAACTTGAAAAG
1 TGCGAGCATACATGTTGCAAACATGAAAAG
50010 TGCGAGCATACATGTTGCGAAACATGAAAAG
1 TGCGAGCATACATGTTGC-AAACATGAAAAG
*
50041 TGCGAGCATACATGTTGCGAACATGAAAAG
1 TGCGAGCATACATGTTGCAAACATGAAAAG
*
50071 TGCGAGCATACATGTTGCGAACATGAATAA-
1 TGCGAGCATACATGTTGCAAACATGAA-AAG
* ** * *
50101 TGCGGGCATGGATGTTGCGAGCATGAAAA
1 TGCGAGCATACATGTTGCAAACATGAAAA
50130 TTTTGATCAT
Statistics
Matches: 139, Mismatches: 8, Indels: 7
0.90 0.05 0.05
Matches are distributed among these distances:
29 3 0.02
30 105 0.76
31 31 0.22
ACGTcount: A:0.37, C:0.16, G:0.27, T:0.21
Consensus pattern (30 bp):
TGCGAGCATACATGTTGCAAACATGAAAAG
Found at i:50116 original size:91 final size:90
Alignment explanation
Indices: 49950--50129 Score: 247
Period size: 91 Copynumber: 2.0 Consensus size: 90
49940 GAGGGAATGA
*
49950 TGCGAGCATGAATATTGCAAACATGAAAAGTGCGAGCATACATGTTGCAAACTTGAAAAGTGCGA
1 TGCGAGCATGAATATTGCAAACATGAAAAGTGCGAGCATACATGTTGCAAACATGAAAAGTGCGA
50015 GCATACATGTTGCGAAACATGAAAAG
66 GCATACATGTTGCG-AACATGAAAAG
* * *
50041 TGCGAGCAT-ACATGTTGCGAACATGAAAAGTGCGAGCATACATGTTGCGAACATGAATAA-TGC
1 TGCGAGCATGA-ATATTGCAAACATGAAAAGTGCGAGCATACATGTTGCAAACATGAA-AAGTGC
* ** *
50104 GGGCATGGATGTTGCGAGCATGAAAA
64 GAGCATACATGTTGCGAACATGAAAA
50130 TTTTGATCAT
Statistics
Matches: 79, Mismatches: 8, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
90 10 0.13
91 67 0.85
92 2 0.03
ACGTcount: A:0.37, C:0.16, G:0.27, T:0.21
Consensus pattern (90 bp):
TGCGAGCATGAATATTGCAAACATGAAAAGTGCGAGCATACATGTTGCAAACATGAAAAGTGCGA
GCATACATGTTGCGAACATGAAAAG
Found at i:50148 original size:60 final size:61
Alignment explanation
Indices: 49950--50129 Score: 251
Period size: 61 Copynumber: 3.0 Consensus size: 61
49940 GAGGGAATGA
* * *
49950 TGCGAGCATGA-ATATTGC-AAACATGAAAAGTGCGAGCATACATGTTGCAAACTTGAAAAG
1 TGCGAGCAT-ACATGTTGCGAAACATGAAAAGTGCGAGCATACATGTTGCGAACATGAAAAG
50010 TGCGAGCATACATGTTGCGAAACATGAAAAGTGCGAGCATACATGTTGCGAACATGAAAAG
1 TGCGAGCATACATGTTGCGAAACATGAAAAGTGCGAGCATACATGTTGCGAACATGAAAAG
* ** *
50071 TGCGAGCATACATGTTGCG-AACATGAATAA-TGCGGGCATGGATGTTGCGAGCATGAAAA
1 TGCGAGCATACATGTTGCGAAACATGAA-AAGTGCGAGCATACATGTTGCGAACATGAAAA
50130 TTTTGATCAT
Statistics
Matches: 110, Mismatches: 7, Indels: 6
0.89 0.06 0.05
Matches are distributed among these distances:
59 1 0.01
60 48 0.44
61 61 0.55
ACGTcount: A:0.37, C:0.16, G:0.27, T:0.21
Consensus pattern (61 bp):
TGCGAGCATACATGTTGCGAAACATGAAAAGTGCGAGCATACATGTTGCGAACATGAAAAG
Found at i:50194 original size:15 final size:15
Alignment explanation
Indices: 50174--50203 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
50164 GAGCATGAAA
50174 GTTGCGAACACTAAC
1 GTTGCGAACACTAAC
*
50189 GTTGCGAGCACTAAC
1 GTTGCGAACACTAAC
50204 CAATCTGACC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.30, C:0.27, G:0.23, T:0.20
Consensus pattern (15 bp):
GTTGCGAACACTAAC
Found at i:50787 original size:30 final size:30
Alignment explanation
Indices: 50751--50810 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
50741 GCTTGAGGTG
50751 TGTTTCTATTCGTGCTACATATTTGTTGTT
1 TGTTTCTATTCGTGCTACATATTTGTTGTT
* * * *
50781 TGTTTCTATTTGTGTTATATGTTTGTTGTT
1 TGTTTCTATTCGTGCTACATATTTGTTGTT
50811 AGATGTTATT
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.12, C:0.08, G:0.18, T:0.62
Consensus pattern (30 bp):
TGTTTCTATTCGTGCTACATATTTGTTGTT
Found at i:65644 original size:220 final size:220
Alignment explanation
Indices: 65296--65691 Score: 661
Period size: 220 Copynumber: 1.8 Consensus size: 220
65286 TAGAATTCTA
* *
65296 AAGCAATTGACATCTGAAAACTAACACAACCCAGTTCCAACGATTTTTTTTTTCTTTTGCAAAAT
1 AAGCAACTGACATCTGAAAACTAACACAACCCACTTCCAACGATTTTTTTTTTCTTTTGCAAAAT
* *
65361 GCATTATCTTTTATTTTTCTCATTTATGTCATTCCAACACTTCTTCCTAATAAATGTTCAAGAAA
66 GCATTATCTTTTATTTTGCTCATTTATGTCATTCCAACACTTCTTCCTAATAAATATTCAAGAAA
*
65426 AGGAAATTCTTAATGTGATTCAGCAATTTGTCAGCAAGACT-ATGCAGCCATGGAAACCTAACAC
131 AGGAAATTCTTAATGTCATTCAGCAATTTGTCAGCAAGACTGATGCAGCCATGGAAACCTAACAC
65490 TAGCCATCAGAAATACAGAATACCT
196 TAGCCATCAGAAATACAGAATACCT
* * *
65515 AAGCAACTGACATCTG-AAACTATCACAACCCACTTCTAACGATTTTTTTTTTTTTTTTTGCAAA
1 AAGCAACTGACATCTGAAAACTAACACAACCCACTTCCAACGA--TTTTTTTTTTCTTTTGCAAA
* *
65579 ATGCATTATCTTTTATTTTGCTCATTTATGTCATTCCAAGACTTCTTCCTAATAGATATTCAAGA
64 ATGCATTATCTTTTATTTTGCTCATTTATGTCATTCCAACACTTCTTCCTAATAAATATTCAAGA
*
65644 AAAGGAAATTCTTAATGTCATTCAGCAATTTGTCTGCAAGACTGATGC
129 AAAGGAAATTCTTAATGTCATTCAGCAATTTGTCAGCAAGACTGATGC
65692 TCTAATATTG
Statistics
Matches: 163, Mismatches: 11, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
218 23 0.14
219 15 0.09
220 121 0.74
221 4 0.02
ACGTcount: A:0.33, C:0.20, G:0.11, T:0.36
Consensus pattern (220 bp):
AAGCAACTGACATCTGAAAACTAACACAACCCACTTCCAACGATTTTTTTTTTCTTTTGCAAAAT
GCATTATCTTTTATTTTGCTCATTTATGTCATTCCAACACTTCTTCCTAATAAATATTCAAGAAA
AGGAAATTCTTAATGTCATTCAGCAATTTGTCAGCAAGACTGATGCAGCCATGGAAACCTAACAC
TAGCCATCAGAAATACAGAATACCT
Found at i:69244 original size:19 final size:20
Alignment explanation
Indices: 69191--69245 Score: 60
Period size: 20 Copynumber: 2.8 Consensus size: 20
69181 TTACTCTCAC
*
69191 TATTTTAAATATAAAATATT
1 TATTTTAATTATAAAATATT
*
69211 TATTTTATATCATAAAA-A-T
1 TATTTTA-ATTATAAAATATT
69230 TATATTTAATTATAAA
1 TAT-TTTAATTATAAA
69246 TTAAAGAAAA
Statistics
Matches: 30, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
19 11 0.37
20 12 0.40
21 7 0.23
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (20 bp):
TATTTTAATTATAAAATATT
Found at i:69369 original size:13 final size:13
Alignment explanation
Indices: 69336--69361 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
69326 ATTTGAGTTG
69336 ATTTTTTATTTTT
1 ATTTTTTATTTTT
69349 ATTTTTTATTTTT
1 ATTTTTTATTTTT
69362 TTTATTTACC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.15, C:0.00, G:0.00, T:0.85
Consensus pattern (13 bp):
ATTTTTTATTTTT
Found at i:73136 original size:3 final size:3
Alignment explanation
Indices: 73130--73166 Score: 74
Period size: 3 Copynumber: 12.3 Consensus size: 3
73120 TTATCGAAAT
73130 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T
73167 TTCGGTTAAA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 34 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (3 bp):
TAA
Found at i:78122 original size:20 final size:18
Alignment explanation
Indices: 78075--78182 Score: 62
Period size: 19 Copynumber: 5.8 Consensus size: 18
78065 CACAATAAAA
78075 ATTAAATTAA-ATTTAAT
1 ATTAAATTAATATTTAAT
78092 ATTCAAA-TAATCACTTTAAT
1 ATT-AAATTAAT-A-TTTAAT
** *
78112 ATTAAATTAATAAAATACT
1 ATTAAATTAAT-ATTTAAT
**
78131 ACAAAATTAAGTA-TTAA-
1 ATTAAATTAA-TATTTAAT
*
78148 ATTAAATTTAATATTAAACT
1 ATTAAA-TTAATATTTAA-T
*
78168 ATTAAAATAATATTT
1 ATTAAATTAATATTT
78183 TTTGGAATAG
Statistics
Matches: 68, Mismatches: 13, Indels: 18
0.69 0.13 0.18
Matches are distributed among these distances:
17 12 0.18
18 12 0.18
19 23 0.34
20 21 0.31
ACGTcount: A:0.53, C:0.06, G:0.01, T:0.41
Consensus pattern (18 bp):
ATTAAATTAATATTTAAT
Found at i:80711 original size:20 final size:21
Alignment explanation
Indices: 80675--80724 Score: 52
Period size: 20 Copynumber: 2.4 Consensus size: 21
80665 ATTGGCATGG
*
80675 TTTATATTAAGTGTAAATAT-A
1 TTTA-ATTAAGTGTAAAAATGA
80696 TTTAATTAAGAT-TAAAAATGA
1 TTTAATTAAG-TGTAAAAATGA
80717 -TTAATTAA
1 TTTAATTAA
80725 AGCTTAATGA
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
20 20 0.77
21 6 0.23
ACGTcount: A:0.48, C:0.00, G:0.08, T:0.44
Consensus pattern (21 bp):
TTTAATTAAGTGTAAAAATGA
Found at i:81946 original size:24 final size:24
Alignment explanation
Indices: 81914--81973 Score: 120
Period size: 24 Copynumber: 2.5 Consensus size: 24
81904 TGACTTGAGT
81914 TGTATCGGTAGTTTTTAGCATTAA
1 TGTATCGGTAGTTTTTAGCATTAA
81938 TGTATCGGTAGTTTTTAGCATTAA
1 TGTATCGGTAGTTTTTAGCATTAA
81962 TGTATCGGTAGT
1 TGTATCGGTAGT
81974 ATGCATGCAT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 36 1.00
ACGTcount: A:0.23, C:0.08, G:0.23, T:0.45
Consensus pattern (24 bp):
TGTATCGGTAGTTTTTAGCATTAA
Done.