Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01013483.1 Kokia drynarioides strain JFW-HI SEQ_128509, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2584
ACGTcount: A:0.34, C:0.17, G:0.14, T:0.35


Found at i:1467 original size:16 final size:16

Alignment explanation


    Indices: 1446--1478  Score: 66
    Period size: 16  Copynumber: 2.1  Consensus size: 16

       1436 AGCAACAAAA

                            
       1446 TATGAGTAAAACTTGC
          1 TATGAGTAAAACTTGC

                            
       1462 TATGAGTAAAACTTGC
          1 TATGAGTAAAACTTGC

             
       1478 T
          1 T

       1479 GTGGAAGTTG


Statistics
Matches: 17,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  16   17  1.00

ACGTcount: A:0.36, C:0.12, G:0.18, T:0.33


Consensus pattern (16 bp):   
TATGAGTAAAACTTGC
Done.