genome.fa.s13490.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01013490.1 Kokia drynarioides strain JFW-HI SEQ_128516, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  66140

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
649--1080	59	7.3	59	87	3	593	36	33	1	28	1.66
649--1119	30	16.0	27	74	18	250	36	33	2	28	1.69
651--1120	29	15.9	30	71	22	229	36	33	2	27	1.69
2734--2767	17	2.0	17	88	11	52	58	8	2	29	1.43
4806--4847	18	2.3	19	80	12	52	61	0	2	35	1.09
4765--4852	36	2.7	31	73	20	81	56	0	2	40	1.11
4776--4847	36	2.0	36	81	5	83	56	0	1	41	1.07
9962--10003	21	2.0	21	95	0	75	40	23	7	28	1.81
10257--10538	141	2.0	141	100	0	564	39	7	14	39	1.74
11853--11965	27	4.0	27	79	16	106	53	2	3	40	1.32
11891--12015	31	4.1	30	79	7	103	54	3	3	39	1.33
11855--11980	56	2.2	56	81	14	134	51	2	3	42	1.33
17930--18079	42	3.6	42	82	7	157	28	25	11	35	1.90
19338--19376	16	2.4	16	86	0	60	46	25	2	25	1.66
21189--21263	24	3.1	24	90	0	105	25	24	24	26	2.00
21954--22005	21	2.5	21	81	6	61	25	15	28	30	1.96
25621--25670	18	2.7	18	81	3	64	28	22	20	30	1.98
26401--26440	21	1.9	21	84	0	53	27	15	20	37	1.92
30590--30624	17	2.1	17	94	0	61	8	5	31	54	1.54
36113--36606	39	12.7	39	74	9	314	24	32	19	23	1.98
36112--36615	78	6.5	78	75	5	371	24	32	19	23	1.97
36113--36606	117	4.2	116	78	5	352	24	32	19	23	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37178--37221	17	2.6	17	75	13	54	40	2	2	54	1.25
37499--37579	40	2.0	40	92	0	135	46	8	19	24	1.78
38198--38232	3	11.7	3	100	0	70	68	0	0	31	0.90
39042--39352	30	10.6	29	78	8	267	37	23	2	36	1.67
39050--39352	59	5.2	59	76	10	248	37	22	2	37	1.67
39077--39275	88	2.2	89	86	0	274	38	21	1	39	1.60
39077--39308	88	2.6	88	82	4	245	38	22	1	37	1.63
39277--39374	30	3.3	29	78	5	90	39	23	3	33	1.70
42276--42314	21	1.9	21	89	5	62	20	17	0	61	1.34

Tables:   1

The End!