Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01013491.1 Kokia drynarioides strain JFW-HI SEQ_128517, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1883
ACGTcount: A:0.35, C:0.17, G:0.15, T:0.34


Found at i:1132 original size:19 final size:19

Alignment explanation


    Indices: 1098--1144  Score: 60
    Period size: 19  Copynumber: 2.5  Consensus size: 19

       1088 TTTCTTATAT

                      *       *
       1098 TATTAC-AGTTTTCATACG
          1 TATTACAAGTATTCATACA

                               
       1116 TATTACAAGTATTCATACA
          1 TATTACAAGTATTCATACA

                 *    
       1135 TATTATAAGT
          1 TATTACAAGT

       1145 CATACATACT


Statistics
Matches: 25,  Mismatches: 3, Indels: 1
        0.86            0.10        0.03

Matches are distributed among these distances:
  18    6  0.24
  19   19  0.76

ACGTcount: A:0.36, C:0.13, G:0.09, T:0.43


Consensus pattern (19 bp):   
TATTACAAGTATTCATACA
Done.