genome.fa.s13493.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01013493.1 Kokia drynarioides strain JFW-HI SEQ_128519, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  101423

Tables:   1   

This is table  1  of  1  ( 35 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1167--1208	6	6.8	6	79	15	50	4	14	0	80	0.86
1160--1208	25	2.0	25	88	8	73	10	14	0	75	1.04
5546--5596	19	2.6	19	81	12	50	66	3	1	27	1.20
5834--6007	28	5.7	30	70	16	99	27	6	7	58	1.50
5924--6007	32	2.6	30	77	20	80	29	5	4	59	1.42
5919--5995	35	2.3	31	80	13	73	31	3	5	59	1.37
6450--6836	153	2.5	150	87	6	550	20	7	12	59	1.58
6993--7022	15	1.9	16	93	6	53	20	0	13	66	1.24
15839--16071	106	2.2	106	83	3	281	25	21	16	36	1.94
15663--16076	107	3.9	107	76	10	413	25	21	18	35	1.95
19695--19726	6	5.3	6	100	0	64	81	0	0	18	0.70
28310--28353	13	3.4	13	77	0	52	38	29	9	22	1.85
28321--28361	20	2.0	20	86	9	57	36	31	9	21	1.86
32688--32726	19	2.2	19	86	9	55	25	7	10	56	1.59
38601--38641	13	3.0	14	79	17	50	36	24	7	31	1.83
38601--38663	27	2.3	27	81	5	74	38	20	6	34	1.78
40858--40926	31	2.2	32	89	5	106	36	11	8	43	1.72
46660--46715	24	2.3	24	87	9	87	58	0	0	41	0.98
49462--49515	15	3.3	15	74	18	54	42	1	1	53	1.22
52213--52273	18	3.2	20	78	19	76	57	0	3	39	1.15
53263--53292	2	15.0	2	92	0	51	53	0	0	46	1.00
59412--59437	5	5.2	5	100	0	52	80	19	0	0	0.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60600--60687	40	2.3	38	81	13	99	45	3	0	51	1.18
68920--68957	20	2.0	20	89	5	60	28	5	0	65	1.14
72279--72318	15	2.5	16	84	8	55	35	2	0	62	1.09
72668--72698	15	2.0	16	93	6	55	29	0	6	64	1.18
74301--74404	9	11.3	9	71	25	51	62	0	1	34	1.13
74328--74368	16	2.5	17	84	4	57	60	0	0	39	0.96
74287--74404	25	4.3	27	74	18	84	61	0	1	36	1.12
79823--79860	20	1.9	20	89	10	60	44	23	15	15	1.85
89417--89460	21	2.1	21	83	8	54	75	9	2	13	1.14
89575--89613	18	2.2	18	95	4	71	51	2	10	35	1.50
90847--90915	28	2.4	28	75	20	70	34	0	11	53	1.37
97392--97439	24	2.0	25	84	12	64	37	25	10	27	1.88
101071--101104	6	5.7	6	100	0	68	47	0	52	0	1.00

Tables:   1

The End!