Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01001350.1 Kokia drynarioides strain JFW-HI SEQ_112799, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1999
ACGTcount: A:0.36, C:0.17, G:0.14, T:0.34


Found at i:1438 original size:36 final size:36

Alignment explanation


    Indices: 1328--1428  Score: 157
    Period size: 36  Copynumber: 2.8  Consensus size: 36

       1318 TTAGTTTGGC

                          *                     
       1328 CAACACGTAATATAAACATCACCTAAACAGCGTCTT
          1 CAACACGTAATATAGACATCACCTAAACAGCGTCTT

                 *  **           *              
       1364 CAACAAGTGGTATAGACATCAACTAAACAGCGTCTT
          1 CAACACGTAATATAGACATCACCTAAACAGCGTCTT

                                         
       1400 CAACACGTAATATAGACATCACCTAAACA
          1 CAACACGTAATATAGACATCACCTAAACA

       1429 TCATGTTCAA


Statistics
Matches: 56,  Mismatches: 9, Indels: 0
        0.86            0.14        0.00

Matches are distributed among these distances:
  36   56  1.00

ACGTcount: A:0.43, C:0.26, G:0.11, T:0.21


Consensus pattern (36 bp):   
CAACACGTAATATAGACATCACCTAAACAGCGTCTT
Done.