genome.fa.s13507.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01013507.1 Kokia drynarioides strain JFW-HI SEQ_128533, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  162429

Tables:   1   

This is table  1  of  1  ( 106 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1813--2338	29	17.9	29	72	14	332	33	30	4	30	1.77
1818--2369	59	9.4	59	86	2	673	33	30	4	30	1.79
1822--2364	117	4.6	117	86	2	705	33	30	4	31	1.78
1822--2426	117	5.2	115	83	5	644	33	30	5	30	1.80
13151--13233	44	1.9	43	82	2	103	39	15	28	15	1.88
13978--14461	206	2.3	206	91	0	788	36	20	22	21	1.96
14305--14594	133	2.2	134	93	0	510	35	16	24	23	1.95
14107--14739	339	1.9	340	88	2	959	35	19	23	20	1.96
15154--15244	17	5.2	17	79	10	85	37	3	3	56	1.32
15154--15235	37	2.3	35	87	4	110	36	3	3	56	1.35
15910--15976	33	2.0	33	82	5	82	50	7	1	40	1.39
15968--16008	18	2.3	18	91	0	64	58	9	4	26	1.50
17106--17263	28	5.5	28	69	18	110	32	31	4	31	1.78
17102--17296	58	3.4	57	86	2	264	32	31	5	30	1.81
17102--17263	29	5.6	28	71	13	132	32	32	4	31	1.77
17338--17409	29	2.4	31	81	11	87	27	22	6	43	1.79
18938--19272	73	4.6	73	80	8	367	25	20	15	39	1.91
18934--19272	37	9.2	36	71	13	174	25	20	15	38	1.91
19542--19607	31	2.1	31	86	5	89	43	10	9	36	1.71
20370--20422	2	26.5	2	100	0	106	49	0	0	50	1.00
22761--22786	4	6.5	4	100	0	52	23	23	53	0	1.46
25238--25267	12	2.5	12	94	0	51	43	13	33	10	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29954--29990	16	2.2	17	90	4	58	32	5	2	59	1.34
29984--30018	2	17.5	2	93	0	61	48	2	0	48	1.16
29988--30029	16	2.6	16	88	0	57	45	4	0	50	1.23
30120--30150	12	2.6	12	94	0	53	51	41	3	3	1.34
30128--30154	14	1.9	14	100	0	54	51	40	0	7	1.30
35006--35066	31	2.0	31	96	0	113	42	9	11	36	1.74
36715--36748	17	1.9	18	94	5	61	41	0	2	55	1.15
37830--38129	30	10.2	29	72	11	175	36	22	4	37	1.75
37831--38051	59	3.7	59	79	10	218	36	20	4	38	1.73
37852--38109	30	8.8	29	77	7	180	36	21	3	38	1.71
37899--38346	87	5.1	87	77	10	301	35	25	4	34	1.76
38037--38282	58	4.3	57	76	9	230	37	24	4	33	1.75
37841--38282	29	15.1	28	73	12	186	35	23	4	36	1.75
38065--38361	29	10.2	29	73	12	200	36	26	5	30	1.79
42616--42663	20	2.4	19	86	10	60	85	2	10	2	0.77
43593--43626	11	3.4	10	92	8	52	91	0	0	8	0.43
43603--43696	27	3.4	26	79	11	91	81	1	14	2	0.83
43603--43696	7	13.6	7	74	14	63	81	1	14	2	0.83
43612--43696	8	10.5	8	74	12	75	81	1	16	1	0.82
44634--44805	49	3.5	48	77	6	182	36	17	30	15	1.91
44634--44924	99	2.9	99	75	7	223	37	17	28	15	1.91
45395--45483	39	2.3	39	80	0	106	26	30	19	23	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45502--46457	209	4.6	209	89	1	1353	36	18	22	22	1.95
45489--46457	419	2.3	417	87	3	1381	36	18	22	22	1.95
46442--46467	10	2.6	10	100	0	52	34	19	38	7	1.80
46919--46952	17	1.9	18	94	5	61	41	0	2	55	1.15
48360--48863	30	17.1	29	74	10	287	34	25	4	34	1.76
48365--48863	60	8.5	59	75	10	332	35	25	4	34	1.76
48363--48587	91	2.5	89	82	7	249	36	24	4	34	1.75
48609--48949	29	11.8	29	74	10	252	33	26	6	33	1.81
50367--50405	15	2.8	13	82	14	51	35	17	0	46	1.49
50367--50404	14	2.7	14	84	11	51	36	15	0	47	1.46
52476--52542	30	2.2	32	78	10	77	41	7	0	50	1.30
55933--56031	47	2.1	47	96	0	180	25	26	32	16	1.96
64637--64683	2	23.5	2	82	8	60	44	2	0	53	1.12
67622--67673	27	1.9	27	100	0	104	28	28	3	38	1.75
67982--68015	18	1.9	18	94	5	61	58	11	2	26	1.47
68224--68268	21	2.0	23	87	12	67	51	0	0	48	1.00
69603--69687	31	2.8	31	80	8	77	34	7	8	50	1.59
70471--70595	62	2.0	62	83	9	157	36	7	4	52	1.50
74356--74421	29	2.3	28	84	10	80	43	0	1	54	1.09
79040--79080	14	3.1	14	72	13	50	26	7	2	63	1.33
79108--79145	15	2.4	16	86	8	51	42	2	5	50	1.39
82793--83019	117	1.9	117	95	1	411	38	13	16	30	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
91527--91571	11	3.9	12	85	8	67	84	0	15	0	0.62
97114--97147	17	2.0	18	88	11	54	58	0	0	41	0.98
99494--99543	14	3.8	13	76	12	57	42	2	0	56	1.11
106533--106778	29	8.4	29	74	11	153	38	5	23	33	1.77
106533--106778	60	4.2	57	82	7	180	38	5	23	33	1.77
106534--106710	28	6.1	28	74	12	126	36	5	25	32	1.80
106534--106778	86	2.8	87	80	7	223	37	5	23	33	1.77
106620--106784	60	2.8	59	89	1	258	40	4	21	33	1.73
107641--108980	445	3.0	446	93	1	2337	31	13	15	39	1.87
109588--109642	17	3.7	14	79	16	58	61	0	3	34	1.13
110200--110998	206	3.9	206	85	3	1105	22	23	18	35	1.95
109993--111035	406	2.6	407	87	1	1519	21	22	18	36	1.95
112311--112623	29	10.7	29	69	13	167	32	3	26	38	1.72
112313--112633	176	1.8	177	85	3	450	32	3	26	38	1.72
112311--112623	117	2.7	117	84	5	355	32	3	26	38	1.72
112311--112623	59	5.3	58	83	4	351	32	3	26	38	1.72
113676--113764	3	28.3	3	70	8	52	37	5	3	53	1.41
114479--114562	6	14.8	6	71	16	63	57	1	3	38	1.24
114480--114562	17	4.6	18	82	12	107	57	1	3	37	1.24
114480--114552	38	1.9	38	91	5	121	57	1	4	36	1.26
117387--117437	21	2.5	20	75	9	57	27	5	13	52	1.63
117982--118033	21	2.4	22	87	12	72	7	5	13	73	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
122455--122513	26	2.3	26	84	0	73	38	11	15	33	1.84
123478--123571	12	8.4	11	70	10	57	65	20	4	9	1.38
123471--123526	23	2.4	23	78	0	58	64	21	8	5	1.42
123493--123580	44	2.0	45	84	6	117	64	20	4	10	1.41
132887--132932	19	2.4	19	81	0	56	34	0	8	56	1.30
134623--134707	32	2.8	29	80	15	91	38	11	8	41	1.72
135176--135210	18	1.9	18	94	0	61	45	0	14	40	1.45
135564--135605	18	2.3	19	80	12	52	66	2	0	30	1.04
135565--135602	19	2.0	19	85	10	51	63	2	0	34	1.09
137439--137540	51	2.0	51	96	0	186	26	12	22	38	1.90
140791--140966	43	4.1	42	75	5	138	30	21	18	29	1.97
140840--140966	43	3.0	43	81	2	148	29	21	18	30	1.97
141082--141110	15	1.9	15	100	0	58	48	24	0	27	1.51
142373--142409	2	18.5	2	94	0	65	0	48	0	51	1.00
147261--147288	2	14.0	2	100	0	56	0	50	0	50	1.00
151974--152035	29	2.1	29	85	5	81	45	33	1	19	1.60
152762--152790	2	14.5	2	100	0	58	51	0	0	48	1.00
158518--158560	21	2.0	22	86	13	63	27	13	2	55	1.51

Tables:   1

The End!