Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01013509.1 Kokia drynarioides strain JFW-HI SEQ_128535, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1862
ACGTcount: A:0.29, C:0.14, G:0.23, T:0.33


Found at i:66 original size:24 final size:24

Alignment explanation


    Indices: 35--90  Score: 85
    Period size: 24  Copynumber: 2.3  Consensus size: 24

         25 ACGATATGAT

                                    
         35 ATAGAAGACTTGGAGATATCTTTA
          1 ATAGAAGACTTGGAGATATCTTTA

              *          *   *      
         59 ATGGAAGACTTGGTGATTTCTTTA
          1 ATAGAAGACTTGGAGATATCTTTA

                    
         83 ATAGAAGA
          1 ATAGAAGA

         91 GCTTACGTCT


Statistics
Matches: 28,  Mismatches: 4, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
  24   28  1.00

ACGTcount: A:0.36, C:0.07, G:0.23, T:0.34


Consensus pattern (24 bp):   
ATAGAAGACTTGGAGATATCTTTA
Done.