Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01013510.1 Kokia drynarioides strain JFW-HI SEQ_128536, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3792
ACGTcount: A:0.34, C:0.13, G:0.18, T:0.34


Found at i:278 original size:27 final size:28

Alignment explanation


    Indices: 232--284  Score: 72
    Period size: 27  Copynumber: 1.9  Consensus size: 28

        222 TAATATATAT

                  *       *             
        232 AAGAAATAAAAGAATAAAGAA-AGAAAA
          1 AAGAAACAAAAGAAGAAAGAACAGAAAA

                           *          
        259 AAGAAACAAAAGAAGGAAGAACAGAA
          1 AAGAAACAAAAGAAGAAAGAACAGAA

        285 GCTCAAATGA


Statistics
Matches: 22,  Mismatches: 3, Indels: 1
        0.85            0.12        0.04

Matches are distributed among these distances:
  27   18  0.82
  28    4  0.18

ACGTcount: A:0.74, C:0.04, G:0.19, T:0.04


Consensus pattern (28 bp):   
AAGAAACAAAAGAAGAAAGAACAGAAAA
Done.