Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01013514.1 Kokia drynarioides strain JFW-HI SEQ_128540, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 166302
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Warning! 6 characters in sequence are not A, C, G, or T
Found at i:19739 original size:16 final size:16
Alignment explanation
Indices: 19714--19770 Score: 53
Period size: 16 Copynumber: 3.6 Consensus size: 16
19704 AAACTAACCT
*
19714 AAACACAAATGTAAAA
1 AAACATAAATGTAAAA
* *
19730 AAACATAAATATAAAT
1 AAACATAAATGTAAAA
*
19746 AAACATTAAA-GTAAAC
1 AAACA-TAAATGTAAAA
*
19762 AAATATAAA
1 AAACATAAA
19771 ATAAGAATAA
Statistics
Matches: 34, Mismatches: 6, Indels: 3
0.79 0.14 0.07
Matches are distributed among these distances:
15 4 0.12
16 26 0.76
17 4 0.12
ACGTcount: A:0.68, C:0.09, G:0.04, T:0.19
Consensus pattern (16 bp):
AAACATAAATGTAAAA
Found at i:20520 original size:151 final size:152
Alignment explanation
Indices: 20350--20867 Score: 708
Period size: 151 Copynumber: 3.4 Consensus size: 152
20340 TGATTAAACA
* * * * *
20350 AAAATCACTACTTTACTTAAAAATTCAAACTTTTATATCGAAATAGTT-TAAAAAATCAAAACTT
1 AAAATCACTATTTTGCTTAAAAATCCAAACTTTTATTTCGAAATAGTTAGAAAAAATCAAAACTT
* * ***
20414 TGTTAAAAATTTAAATTTTTTCTTTAAAATCACT-AAAAACATATTTTTATTTTTTTTTAATCTA
66 TGTTAAAAATTTAAAATTTTTCTTTAAAATAACTAAAAAACATATTTTTATTTTTTAAAAATCTA
20478 AACTTTCTTCTTTTTTTTTAAAG
131 AACTTTC-TCTTTTTTTTTAAAG
* * *
20501 AAAATCACTATTTTGCTTAAAAATCCAAATTTTTATTTCGAAATTGTTAGAAAAAATAAAAACTT
1 AAAATCACTATTTTGCTTAAAAATCCAAACTTTTATTTCGAAATAGTTAGAAAAAATCAAAACTT
* *
20566 TGTTAAAATTTTAAAATTTTTCTTTAAAATAACTAAAAAAACATATTTTTATTTTTCAAAAATCT
66 TGTTAAAAATTTAAAATTTTTCTTTAAAATAACT-AAAAAACATATTTTTATTTTTTAAAAATCT
*
20631 AAACTTTCTC--TTTCTTTAAAG
130 AAACTTTCTCTTTTTTTTTAAAG
* *
20652 AAAATAATTATTTTGCTTAAAAATCCAAACTTTTATTTCGAAATAGTTAGAAAAAATCAAAACTT
1 AAAATCACTATTTTGCTTAAAAATCCAAACTTTTATTTCGAAATAGTTAGAAAAAATCAAAACTT
* *
20717 TGTTAAAAATTTAAACTTTTTCTTTAAAATAACTAAAAAAACAAATTTTTATTTTTTAAAAATCT
66 TGTTAAAAATTTAAAATTTTTCTTTAAAATAACT-AAAAAACATATTTTTATTTTTTAAAAATCT
*
20782 AAAGTTTCTCTTTTTTTTTAAAG
130 AAACTTTCTCTTTTTTTTTAAAG
* * * *
20805 AAAATCTCTATTTTGCTCAAAAAAT-CAAAGC-TTTATTTTGAAATTGTTTA-AAAAAATCAAAA
1 AAAATCACTATTTTGCT-TAAAAATCCAAA-CTTTTATTTCGAAATAG-TTAGAAAAAATCAAAA
20867 C
63 C
20868 ATTTCCCAAA
Statistics
Matches: 326, Mismatches: 33, Indels: 14
0.87 0.09 0.04
Matches are distributed among these distances:
151 182 0.56
152 45 0.14
153 56 0.17
154 43 0.13
ACGTcount: A:0.43, C:0.11, G:0.04, T:0.43
Consensus pattern (152 bp):
AAAATCACTATTTTGCTTAAAAATCCAAACTTTTATTTCGAAATAGTTAGAAAAAATCAAAACTT
TGTTAAAAATTTAAAATTTTTCTTTAAAATAACTAAAAAACATATTTTTATTTTTTAAAAATCTA
AACTTTCTCTTTTTTTTTAAAG
Found at i:31155 original size:13 final size:13
Alignment explanation
Indices: 31137--31165 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
31127 AATACTCTAC
31137 TTTCAAGTTATAT
1 TTTCAAGTTATAT
31150 TTTCAAGTTATAT
1 TTTCAAGTTATAT
31163 TTT
1 TTT
31166 TAAACTATAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.28, C:0.07, G:0.07, T:0.59
Consensus pattern (13 bp):
TTTCAAGTTATAT
Found at i:31191 original size:26 final size:26
Alignment explanation
Indices: 31145--31195 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
31135 ACTTTCAAGT
* *
31145 TATATTTTCAAGTTATATTTTTAAAC
1 TATATTTTAAAGATATATTTTTAAAC
*
31171 TATATTTTAAAGATATGTTTTTAAA
1 TATATTTTAAAGATATATTTTTAAA
31196 GTACGATTTT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.37, C:0.04, G:0.06, T:0.53
Consensus pattern (26 bp):
TATATTTTAAAGATATATTTTTAAAC
Found at i:31450 original size:48 final size:48
Alignment explanation
Indices: 31393--31498 Score: 203
Period size: 48 Copynumber: 2.2 Consensus size: 48
31383 TCCATTCACA
31393 AGGACATGTTGGCGTACAAGAGAGTGTTTAGCTTTATGCTACACTTAT
1 AGGACATGTTGGCGTACAAGAGAGTGTTTAGCTTTATGCTACACTTAT
*
31441 TGGACATGTTGGCGTACAAGAGAGTGTTTAGCTTTATGCTACACTTAT
1 AGGACATGTTGGCGTACAAGAGAGTGTTTAGCTTTATGCTACACTTAT
31489 AGGACATGTT
1 AGGACATGTT
31499 AAGGACTCTC
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
48 56 1.00
ACGTcount: A:0.26, C:0.14, G:0.25, T:0.34
Consensus pattern (48 bp):
AGGACATGTTGGCGTACAAGAGAGTGTTTAGCTTTATGCTACACTTAT
Found at i:35059 original size:13 final size:13
Alignment explanation
Indices: 35033--35073 Score: 55
Period size: 13 Copynumber: 3.1 Consensus size: 13
35023 TCAAGGTTTA
*
35033 AGAAGAAAAAAAG
1 AGAAGAAAAGAAG
*
35046 AGAGGAAAAGAAG
1 AGAAGAAAAGAAG
35059 AGAAGAAGAAGAAG
1 AGAAGAA-AAGAAG
35073 A
1 A
35074 AAATGGAGAT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
13 17 0.71
14 7 0.29
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (13 bp):
AGAAGAAAAGAAG
Found at i:35433 original size:16 final size:16
Alignment explanation
Indices: 35409--35442 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
35399 TTTTGTTGGT
*
35409 TGTTGCTTCTCATGGC
1 TGTTACTTCTCATGGC
35425 TGTTACTTCTCATGGC
1 TGTTACTTCTCATGGC
35441 TG
1 TG
35443 CTGGTTTGGT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.09, C:0.24, G:0.24, T:0.44
Consensus pattern (16 bp):
TGTTACTTCTCATGGC
Found at i:37148 original size:33 final size:33
Alignment explanation
Indices: 37086--37149 Score: 85
Period size: 33 Copynumber: 1.9 Consensus size: 33
37076 AGCATCCAAT
* **
37086 ATAAAGCCAACATAATGCAGACATAAAGTCATC
1 ATAAAGCCAACAAAAAACAGACATAAAGTCATC
37119 ATAAAGCCAACAAAAAACA-ACATACAAGTCA
1 ATAAAGCCAACAAAAAACAGACATA-AAGTCA
37150 AAATAGGTTT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
32 5 0.19
33 22 0.81
ACGTcount: A:0.55, C:0.22, G:0.09, T:0.14
Consensus pattern (33 bp):
ATAAAGCCAACAAAAAACAGACATAAAGTCATC
Found at i:37218 original size:24 final size:25
Alignment explanation
Indices: 37164--37221 Score: 75
Period size: 24 Copynumber: 2.4 Consensus size: 25
37154 AGGTTTAGGG
37164 TATTAAAAAACAACATACAAAACAA
1 TATTAAAAAACAACATACAAAACAA
* * *
37189 -AATAAAGAACAACA-ACAAAATAA
1 TATTAAAAAACAACATACAAAACAA
37212 TATTAAAAAA
1 TATTAAAAAA
37222 GCATACAAGT
Statistics
Matches: 27, Mismatches: 5, Indels: 3
0.77 0.14 0.09
Matches are distributed among these distances:
23 8 0.30
24 19 0.70
ACGTcount: A:0.71, C:0.12, G:0.02, T:0.16
Consensus pattern (25 bp):
TATTAAAAAACAACATACAAAACAA
Found at i:56388 original size:19 final size:17
Alignment explanation
Indices: 56353--56391 Score: 51
Period size: 19 Copynumber: 2.2 Consensus size: 17
56343 GGGTGTTGAG
*
56353 GAAGAGGAGGAAGAAGA
1 GAAGAGGAAGAAGAAGA
56370 GAAGAGAGAAGAAGTAAGA
1 GAAGAG-GAAGAAG-AAGA
56389 GAA
1 GAA
56392 AAGAAAAAGA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 6 0.32
18 6 0.32
19 7 0.37
ACGTcount: A:0.56, C:0.00, G:0.41, T:0.03
Consensus pattern (17 bp):
GAAGAGGAAGAAGAAGA
Found at i:66532 original size:23 final size:22
Alignment explanation
Indices: 66500--66542 Score: 59
Period size: 23 Copynumber: 1.9 Consensus size: 22
66490 AAAAAATTAA
*
66500 AATTAACCCAATTTAATTAATT
1 AATTAACCCAAATTAATTAATT
*
66522 AATTCAACCCAAATTATTTAA
1 AATT-AACCCAAATTAATTAA
66543 AGAAATATTT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 4 0.22
23 14 0.78
ACGTcount: A:0.47, C:0.16, G:0.00, T:0.37
Consensus pattern (22 bp):
AATTAACCCAAATTAATTAATT
Found at i:68901 original size:20 final size:20
Alignment explanation
Indices: 68872--68926 Score: 60
Period size: 20 Copynumber: 2.8 Consensus size: 20
68862 AAATCACTTT
* *
68872 AAAATGATTTTGAACATGTC
1 AAAATCATTTTGAACAAGTC
*
68892 AAAATTA-TTTGAACTAAGTC
1 AAAATCATTTTGAAC-AAGTC
68912 AAAATCATTTT-AACA
1 AAAATCATTTTGAACA
68927 CTTAAAAATG
Statistics
Matches: 30, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
19 8 0.27
20 19 0.63
21 3 0.10
ACGTcount: A:0.45, C:0.11, G:0.09, T:0.35
Consensus pattern (20 bp):
AAAATCATTTTGAACAAGTC
Found at i:68993 original size:34 final size:34
Alignment explanation
Indices: 68953--69022 Score: 140
Period size: 34 Copynumber: 2.1 Consensus size: 34
68943 AAACAAGTCA
68953 AGATAGCTCCAGGACAAAATGTATTCATACTTTT
1 AGATAGCTCCAGGACAAAATGTATTCATACTTTT
68987 AGATAGCTCCAGGACAAAATGTATTCATACTTTT
1 AGATAGCTCCAGGACAAAATGTATTCATACTTTT
69021 AG
1 AG
69023 GCTAAGTATC
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 36 1.00
ACGTcount: A:0.36, C:0.17, G:0.16, T:0.31
Consensus pattern (34 bp):
AGATAGCTCCAGGACAAAATGTATTCATACTTTT
Found at i:70965 original size:37 final size:37
Alignment explanation
Indices: 70915--70991 Score: 136
Period size: 37 Copynumber: 2.1 Consensus size: 37
70905 GAAGAACGGT
* *
70915 GAGCTGACAGAGTTGATGAGCAACAACTCCTGACGAG
1 GAGCTGACAGAGTTGACGAGCAACAACTCCTGACAAG
70952 GAGCTGACAGAGTTGACGAGCAACAACTCCTGACAAG
1 GAGCTGACAGAGTTGACGAGCAACAACTCCTGACAAG
70989 GAG
1 GAG
70992 TGCTTGATGC
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.34, C:0.22, G:0.30, T:0.14
Consensus pattern (37 bp):
GAGCTGACAGAGTTGACGAGCAACAACTCCTGACAAG
Found at i:73831 original size:17 final size:17
Alignment explanation
Indices: 73800--73858 Score: 55
Period size: 17 Copynumber: 3.5 Consensus size: 17
73790 TAATTGTCCC
* *
73800 TGCATTATTAATGTCAT
1 TGCATTTTTATTGTCAT
*
73817 TGCATTTTTATTGTCGT
1 TGCATTTTTATTGTCAT
* **
73834 TGTATTTACATTGTCAT
1 TGCATTTTTATTGTCAT
*
73851 TGTATTTT
1 TGCATTTT
73859 CATATATATA
Statistics
Matches: 34, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
17 34 1.00
ACGTcount: A:0.20, C:0.10, G:0.14, T:0.56
Consensus pattern (17 bp):
TGCATTTTTATTGTCAT
Found at i:74425 original size:6 final size:6
Alignment explanation
Indices: 74414--74446 Score: 50
Period size: 6 Copynumber: 5.5 Consensus size: 6
74404 ATATAAAAAG
74414 AAAGAA AAAG-A AAAGAA AAAGAGA AAAGAA AAA
1 AAAGAA AAAGAA AAAGAA AAAGA-A AAAGAA AAA
74447 ACTGTATTGG
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
5 5 0.20
6 14 0.56
7 6 0.24
ACGTcount: A:0.82, C:0.00, G:0.18, T:0.00
Consensus pattern (6 bp):
AAAGAA
Found at i:74428 original size:11 final size:11
Alignment explanation
Indices: 74408--74446 Score: 53
Period size: 12 Copynumber: 3.5 Consensus size: 11
74398 TCAGTCATAT
74408 AAAAAG-AAAG
1 AAAAAGAAAAG
74418 AAAAAGAAAAG
1 AAAAAGAAAAG
74429 AAAAAGAGAAAAG
1 -AAAA-AGAAAAG
74442 AAAAA
1 AAAAA
74447 ACTGTATTGG
Statistics
Matches: 26, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
10 6 0.23
11 5 0.19
12 8 0.31
13 7 0.27
ACGTcount: A:0.82, C:0.00, G:0.18, T:0.00
Consensus pattern (11 bp):
AAAAAGAAAAG
Found at i:74440 original size:13 final size:12
Alignment explanation
Indices: 74408--74447 Score: 57
Period size: 13 Copynumber: 3.4 Consensus size: 12
74398 TCAGTCATAT
74408 AAAAAG-AAAG-
1 AAAAAGAAAAGA
74418 AAAAAGAAAAGA
1 AAAAAGAAAAGA
74430 AAAAGAGAAAAGA
1 AAAA-AGAAAAGA
74443 AAAAA
1 AAAAA
74448 CTGTATTGGT
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
10 6 0.22
11 4 0.15
12 5 0.19
13 12 0.44
ACGTcount: A:0.82, C:0.00, G:0.17, T:0.00
Consensus pattern (12 bp):
AAAAAGAAAAGA
Found at i:78330 original size:17 final size:17
Alignment explanation
Indices: 78310--78356 Score: 58
Period size: 17 Copynumber: 2.8 Consensus size: 17
78300 GCAATATTAA
**
78310 TGTCATTGCATTTTTAT
1 TGTCATTGCATTTACAT
* *
78327 TGTCTTTGTATTTACAT
1 TGTCATTGCATTTACAT
78344 TGTCATTGCATTT
1 TGTCATTGCATTT
78357 CCATATATAT
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
17 24 1.00
ACGTcount: A:0.17, C:0.13, G:0.13, T:0.57
Consensus pattern (17 bp):
TGTCATTGCATTTACAT
Found at i:81154 original size:91 final size:90
Alignment explanation
Indices: 80945--81205 Score: 318
Period size: 91 Copynumber: 2.9 Consensus size: 90
80935 GAAAGGTCGA
* * *
80945 GGTTAAAATGCAATTTTAGAAAAGTTTAA-GGTTAAAAT-TCAATTTTGGTAAAGTTTA-GGGTT
1 GGTTAAAATGTAATTTTAGAGAAGTTTAAGGGTTAAAATGT-AATTTTGGAAAAGTTTAGGGGTT
* * * * *
81007 --AACGTAATTT-TAGAAAAGTTTAG
65 AAAATGTAATTTGGAAAAAAATTAAG
* * * * *
81030 TGTCAAAATGTAATTTTAAAGAACTTTAAGGGTTAAAATGTAATTTTAGAAAAGTTTAGGGGTTA
1 GGTTAAAATGTAATTTTAGAGAAGTTTAAGGGTTAAAATGTAATTTTGGAAAAGTTTAGGGGTTA
81095 AAATGTAATCTTGGAAAAAAATTAAG
66 AAATGTAAT-TTGGAAAAAAATTAAG
* *
81121 GGTTAAAATTTAATTTTAGAGAAGTTTAAGGGTTAAAATGCAATTTTGGAAAAGTTTAGGGGTTA
1 GGTTAAAATGTAATTTTAGAGAAGTTTAAGGGTTAAAATGTAATTTTGGAAAAGTTTAGGGGTTA
81186 AAATGTAATTTTGGAAAAAA
66 AAATGTAA-TTTGGAAAAAA
81206 TTGGCGGTTA
Statistics
Matches: 148, Mismatches: 20, Indels: 10
0.83 0.11 0.06
Matches are distributed among these distances:
85 23 0.16
86 24 0.16
87 6 0.04
89 7 0.05
90 2 0.01
91 85 0.57
92 1 0.01
ACGTcount: A:0.41, C:0.03, G:0.20, T:0.36
Consensus pattern (90 bp):
GGTTAAAATGTAATTTTAGAGAAGTTTAAGGGTTAAAATGTAATTTTGGAAAAGTTTAGGGGTTA
AAATGTAATTTGGAAAAAAATTAAG
Found at i:81217 original size:30 final size:30
Alignment explanation
Indices: 80899--81203 Score: 268
Period size: 30 Copynumber: 10.3 Consensus size: 30
80889 AAAACATAAA
* *
80899 TTTGAAAAAGTTTAGGGGGTAAAAATGTAAT
1 TTTGGAAAAGTTTA-GGGGTTAAAATGTAAT
* * * *
80930 TTTAGG-AAAG-GTCGAGGTTAAAATGCAAT
1 TTT-GGAAAAGTTTAGGGGTTAAAATGTAAT
* *
80959 TTTAGAAAAGTTTA-AGGTTAAAAT-TCAAT
1 TTTGGAAAAGTTTAGGGGTTAAAATGT-AAT
* *
80988 TTTGGTAAAGTTTA-GGGTT--AACGTAAT
1 TTTGGAAAAGTTTAGGGGTTAAAATGTAAT
* * *
81015 TTTAGAAAAGTTTA-GTGTCAAAATGTAAT
1 TTTGGAAAAGTTTAGGGGTTAAAATGTAAT
* * *
81044 TTT-AAAGAACTTTAAGGGTTAAAATGTAAT
1 TTTGGAA-AAGTTTAGGGGTTAAAATGTAAT
*
81074 TTTAGAAAAGTTTAGGGGTTAAAATGTAAT
1 TTTGGAAAAGTTTAGGGGTTAAAATGTAAT
* ** * *
81104 CTTGGAAAAAAATTAAGGGTTAAAATTTAAT
1 TTTGG-AAAAGTTTAGGGGTTAAAATGTAAT
* * * *
81135 TTTAGAGAAGTTTAAGGGTTAAAATGCAAT
1 TTTGGAAAAGTTTAGGGGTTAAAATGTAAT
81165 TTTGGAAAAGTTTAGGGGTTAAAATGTAAT
1 TTTGGAAAAGTTTAGGGGTTAAAATGTAAT
81195 TTTGGAAAA
1 TTTGGAAAA
81204 AATTGGCGGT
Statistics
Matches: 220, Mismatches: 43, Indels: 23
0.77 0.15 0.08
Matches are distributed among these distances:
27 20 0.09
28 4 0.02
29 65 0.30
30 97 0.44
31 33 0.15
32 1 0.00
ACGTcount: A:0.41, C:0.03, G:0.22, T:0.35
Consensus pattern (30 bp):
TTTGGAAAAGTTTAGGGGTTAAAATGTAAT
Found at i:81601 original size:20 final size:21
Alignment explanation
Indices: 81576--81619 Score: 63
Period size: 20 Copynumber: 2.1 Consensus size: 21
81566 TTTATAAATA
* *
81576 TCATTTTTTGATT-TTTTTTT
1 TCATTTTTTCATTCTTTTTCT
81596 TCATTTTTTCATTCTTTTTCT
1 TCATTTTTTCATTCTTTTTCT
81617 TCA
1 TCA
81620 AAAATTTCAG
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 12 0.57
21 9 0.43
ACGTcount: A:0.11, C:0.14, G:0.02, T:0.73
Consensus pattern (21 bp):
TCATTTTTTCATTCTTTTTCT
Found at i:82151 original size:15 final size:16
Alignment explanation
Indices: 82133--82169 Score: 67
Period size: 15 Copynumber: 2.4 Consensus size: 16
82123 TATTTTTCTT
82133 TTTATTATTAATA-TA
1 TTTATTATTAATATTA
82148 TTTATTATTAATATTA
1 TTTATTATTAATATTA
82164 TTTATT
1 TTTATT
82170 TAATATGTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 13 0.62
16 8 0.38
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (16 bp):
TTTATTATTAATATTA
Found at i:83525 original size:39 final size:39
Alignment explanation
Indices: 83321--83921 Score: 356
Period size: 39 Copynumber: 15.4 Consensus size: 39
83311 CTACCCCTGT
* * * **
83321 CTCGGGGTAAGAGATTGGCTGACGGTGATCTACCCCATA
1 CTCGGGGTAAGAGATTGGATGATGGTGATCTGCCCCAGG
* * * * * * * ** * * *
83360 CTTGAGATAAAAGATTGAATGGTTGCAATCTACTCCAAG
1 CTCGGGGTAAGAGATTGGATGATGGTGATCTGCCCCAGG
* * * * * * *
83399 CTCGAGGTCAGAGATTGGCTGGTGGGGATATGCCCCATG
1 CTCGGGGTAAGAGATTGGATGATGGTGATCTGCCCCAGG
** * *** *
83438 CTCGGGGTAAGAGATCAGATGGCTGNCAATTTGCCCCAGG
1 CTCGGGGTAAGAGATTGGAT-GATGGTGATCTGCCCCAGG
* *
83478 CTCGGGGTAAGAGATTGGCTGATAGTGATCTGCCCCAGG
1 CTCGGGGTAAGAGATTGGATGATGGTGATCTGCCCCAGG
* * *** * *
83517 CT-GAGGGTAAAAGATCGGATGACT-ACAATTTGCCCTAGG
1 CTCG-GGGTAAGAGATTGGATGA-TGGTGATCTGCCCCAGG
** *
83556 CTCAAGGTAAGAGATTAGATGATGGTGATCTGCCCCAGG
1 CTCGGGGTAAGAGATTGGATGATGGTGATCTGCCCCAGG
* * * ***
83595 CTCGGGGTAAAAGATTGGATG--GCTGAAATCTTCATTAGG
1 CTCGGGGTAAGAGATTGGATGATGGTG--ATCTGCCCCAGG
*
83634 CTCGGGGTAAGAGATT-GACTGATGGTGATCTGCCCCATG
1 CTCGGGGTAAGAGATTGGA-TGATGGTGATCTGCCCCAGG
* * * * * *
83673 ATCTGGGTAAAACA-TCGAT--TGGTTGCAATCTGCCACAGG
1 CTCGGGGTAAGAGATTGGATGATGG-TG--ATCTGCCCCAGG
* * *
83712 CTCGGGGTAAGAGATTGGCTGATAGTGATCTGCCCCAAG
1 CTCGGGGTAAGAGATTGGATGATGGTGATCTGCCCCAGG
* * * * * *
83751 CTCGAGGTAAAAGATCGGACGATGGTGATTTTCCCCAGG
1 CTCGGGGTAAGAGATTGGATGATGGTGATCTGCCCCAGG
* * * * *
83790 CTCGAGGTAAGAGATAGGACGGCT-GTAATCTGCCCCAGG
1 CTCGGGGTAAGAGATTGGA-TGATGGTGATCTGCCCCAGG
* *
83829 CTTGGGGTAAGAGATTGGATGATGGTGATCTGCCCTAGG
1 CTCGGGGTAAGAGATTGGATGATGGTGATCTGCCCCAGG
* * *
83868 CTCGGGGTAAGAGATCGGATGATGGTGATCTGTCCCATG
1 CTCGGGGTAAGAGATTGGATGATGGTGATCTGCCCCAGG
* *
83907 ATCGGGGTAAAAGAT
1 CTCGGGGTAAGAGAT
83922 CAGAATCTTC
Statistics
Matches: 417, Mismatches: 126, Indels: 38
0.72 0.22 0.07
Matches are distributed among these distances:
36 3 0.01
37 5 0.01
38 8 0.02
39 358 0.86
40 36 0.09
41 5 0.01
42 2 0.00
ACGTcount: A:0.25, C:0.19, G:0.32, T:0.24
Consensus pattern (39 bp):
CTCGGGGTAAGAGATTGGATGATGGTGATCTGCCCCAGG
Found at i:83584 original size:78 final size:79
Alignment explanation
Indices: 83398--83922 Score: 433
Period size: 78 Copynumber: 6.7 Consensus size: 79
83388 TCTACTCCAA
* * * * * * * * * *
83398 GCTCGAGGTCAGAGATTGGCTGGTGGGGATATGCCCCATGCTCGGGGTAAGAGATCAGATGGCTG
1 GCTCGGGGTAAGAGATTGGATGATGGTGATCTGCCCCAGGCTCGGGGTAAAAGATCGGATGACTG
* *
83463 NCAATTTGCCCCAG
66 GCAATTTGCCCTAG
* *
83477 GCTCGGGGTAAGAGATTGGCTGATAGTGATCTGCCCCAGGCT-GAGGGTAAAAGATCGGATGACT
1 GCTCGGGGTAAGAGATTGGATGATGGTGATCTGCCCCAGGCTCG-GGGTAAAAGATCGGATGACT
*
83541 -ACAATTTGCCCTAG
65 GGCAATTTGCCCTAG
** * * *
83555 GCTCAAGGTAAGAGATTAGATGATGGTGATCTGCCCCAGGCTCGGGGTAAAAGATTGGATGGCT-
1 GCTCGGGGTAAGAGATTGGATGATGGTGATCTGCCCCAGGCTCGGGGTAAAAGATCGGATGACTG
* **
83619 GAAATCTT-CATTAG
66 GCAAT-TTGCCCTAG
* * * * *
83633 GCTCGGGGTAAGAGATT-GACTGATGGTGATCTGCCCCATGATCTGGGTAAAACATC-GATTG-G
1 GCTCGGGGTAAGAGATTGGA-TGATGGTGATCTGCCCCAGGCTCGGGGTAAAAGATCGGA-TGAC
* *
83695 TTGCAATCTGCCAC-AG
64 TGGCAATTTGCC-CTAG
* * * * *
83711 GCTCGGGGTAAGAGATTGGCTGATAGTGATCTGCCCCAAGCTCGAGGTAAAAGATCGGACGA-TG
1 GCTCGGGGTAAGAGATTGGATGATGGTGATCTGCCCCAGGCTCGGGGTAAAAGATCGGATGACTG
** * *
83775 GTGATTTTCCCCAG
66 GCAATTTGCCCTAG
* * * * * * * *
83789 GCTCGAGGTAAGAGATAGGACGGCT-GTAATCTGCCCCAGGCTTGGGGTAAGAGATTGGATGA-T
1 GCTCGGGGTAAGAGATTGGA-TGATGGTGATCTGCCCCAGGCTCGGGGTAAAAGATCGGATGACT
** *
83852 GGTGATCTGCCCTAG
65 GGCAATTTGCCCTAG
* * * *
83867 GCTCGGGGTAAGAGATCGGATGATGGTGATCTGTCCCATGATCGGGGTAAAAGATC
1 GCTCGGGGTAAGAGATTGGATGATGGTGATCTGCCCCAGGCTCGGGGTAAAAGATC
83923 AGAATCTTCA
Statistics
Matches: 358, Mismatches: 74, Indels: 29
0.78 0.16 0.06
Matches are distributed among these distances:
77 9 0.03
78 289 0.81
79 60 0.17
ACGTcount: A:0.24, C:0.19, G:0.33, T:0.24
Consensus pattern (79 bp):
GCTCGGGGTAAGAGATTGGATGATGGTGATCTGCCCCAGGCTCGGGGTAAAAGATCGGATGACTG
GCAATTTGCCCTAG
Found at i:84210 original size:48 final size:48
Alignment explanation
Indices: 84158--84259 Score: 186
Period size: 48 Copynumber: 2.1 Consensus size: 48
84148 CAATCTTTTT
84158 CCTTCATGCTCTAAGGTATCGGGTTCGCCATTATGGTCTTAACCTTTC
1 CCTTCATGCTCTAAGGTATCGGGTTCGCCATTATGGTCTTAACCTTTC
* *
84206 CCTTCATGCTCTAAGGTATCGGGTTCGCCATTGTTGTCTTAACCTTTC
1 CCTTCATGCTCTAAGGTATCGGGTTCGCCATTATGGTCTTAACCTTTC
84254 CCTTCA
1 CCTTCA
84260 AATCCTCATG
Statistics
Matches: 52, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
48 52 1.00
ACGTcount: A:0.16, C:0.28, G:0.18, T:0.38
Consensus pattern (48 bp):
CCTTCATGCTCTAAGGTATCGGGTTCGCCATTATGGTCTTAACCTTTC
Found at i:91264 original size:39 final size:39
Alignment explanation
Indices: 91210--91287 Score: 156
Period size: 39 Copynumber: 2.0 Consensus size: 39
91200 GTTGTACCTT
91210 TTCCAAATGGTTTTGCAGTTGTACTTGCTCTTGCATTTC
1 TTCCAAATGGTTTTGCAGTTGTACTTGCTCTTGCATTTC
91249 TTCCAAATGGTTTTGCAGTTGTACTTGCTCTTGCATTTC
1 TTCCAAATGGTTTTGCAGTTGTACTTGCTCTTGCATTTC
91288 CTTCTGGATT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 39 1.00
ACGTcount: A:0.15, C:0.21, G:0.18, T:0.46
Consensus pattern (39 bp):
TTCCAAATGGTTTTGCAGTTGTACTTGCTCTTGCATTTC
Found at i:95163 original size:29 final size:29
Alignment explanation
Indices: 95102--95328 Score: 116
Period size: 29 Copynumber: 7.7 Consensus size: 29
95092 AAAAGTTTAA
* * * *
95102 GAGGTGAAAATGTAATTTTGG-GAAAGCTC
1 GAGGTTAAAATATAATTTTGGAG-AAGTTT
*
95131 GAGGTTAAAATACAATTTTGGAGAAGTTT
1 GAGGTTAAAATATAATTTTGGAGAAGTTT
** *
95160 GAGGTTAAAATATTTTTTTGGAAAAGTTT
1 GAGGTTAAAATATAATTTTGGAGAAGTTT
**
95189 -AGGGTTAAAATATAATTTTAAAGAAGTTT
1 GA-GGTTAAAATATAATTTTGGAGAAGTTT
* * * ** *
95218 AGGGGTCAAAATATCATTTTTAAAAAGTTTT
1 -GAGGTTAAAATATAATTTTGGAGAAG-TTT
* * ** * *
95249 AAGGGTCAAAATGCAATTTTGGAAAATTTT
1 GA-GGTTAAAATATAATTTTGGAGAAGTTT
* * * * *
95279 AGTGGCTAAAATGTAATTTTAGATAAGTTT
1 -GAGGTTAAAATATAATTTTGGAGAAGTTT
* *
95309 AAGGGTTAAAATGTAATTTT
1 GA-GGTTAAAATATAATTTT
95329 TAAAAAATTA
Statistics
Matches: 152, Mismatches: 38, Indels: 15
0.74 0.19 0.07
Matches are distributed among these distances:
28 1 0.01
29 69 0.45
30 61 0.40
31 21 0.14
ACGTcount: A:0.38, C:0.04, G:0.21, T:0.37
Consensus pattern (29 bp):
GAGGTTAAAATATAATTTTGGAGAAGTTT
Found at i:95179 original size:58 final size:59
Alignment explanation
Indices: 95094--95231 Score: 136
Period size: 58 Copynumber: 2.3 Consensus size: 59
95084 TAAAATTGAA
* * ** * **
95094 AAGTTTAAGAGGTGAAAATGTAATTTTGGGAAAGCTCGA-GGTTAAAATACAATTTTGGAG
1 AAGTTT-AGAGGTCAAAATATTTTTTTGGAAAAG-TCGAGGGTTAAAATACAATTTTAAAG
* ** *
95154 AAGTTT-GAGGTTAAAATATTTTTTTGGAAAAGTTTAGGGTTAAAATATAATTTTAAAG
1 AAGTTTAGAGGTCAAAATATTTTTTTGGAAAAGTCGAGGGTTAAAATACAATTTTAAAG
*
95212 AAGTTTAGGGGTCAAAATAT
1 AAGTTTAGAGGTCAAAATAT
95232 CATTTTTAAA
Statistics
Matches: 64, Mismatches: 12, Indels: 5
0.79 0.15 0.06
Matches are distributed among these distances:
57 2 0.03
58 45 0.70
59 11 0.17
60 6 0.09
ACGTcount: A:0.39, C:0.03, G:0.23, T:0.35
Consensus pattern (59 bp):
AAGTTTAGAGGTCAAAATATTTTTTTGGAAAAGTCGAGGGTTAAAATACAATTTTAAAG
Found at i:95231 original size:30 final size:29
Alignment explanation
Indices: 95181--95409 Score: 178
Period size: 30 Copynumber: 7.7 Consensus size: 29
95171 ATTTTTTTGG
* *
95181 AAAAGTTT-AGGGTTAAAATATAATTTTA
1 AAAAGTTTAAGGGTCAAAATGTAATTTTA
* * *
95209 AAGAAGTTTAGGGGTCAAAATATCATTTTTA
1 AA-AAGTTTAAGGGTCAAAATGT-AATTTTA
* *
95240 AAAAGTTTTAAGGGTCAAAATGCAATTTTGG
1 AAAAG-TTTAAGGGTCAAAATGTAATTTT-A
*
95271 AAAA-TTTTAGTGG-CTAAAATGTAATTTTA
1 AAAAGTTTAAG-GGTC-AAAATGTAATTTTA
* *
95300 GATAAGTTTAAGGGTTAAAATGTAATTTTTA
1 -AAAAGTTTAAGGGTCAAAATGTAA-TTTTA
* * **
95331 AAAA-ATTAAGGGTAAAAATGTAAATTTGG
1 AAAAGTTTAAGGGTCAAAATGT-AATTTTA
* *
95360 AAAAGTTTAAGGGTGAAAATGTAATTTTTG
1 AAAAGTTTAAGGGTCAAAATGTAA-TTTTA
**
95390 AAAAGTTTGGGGGTCAAAAT
1 AAAAGTTTAAGGGTCAAAAT
95410 ATGGGTTTTA
Statistics
Matches: 162, Mismatches: 25, Indels: 26
0.76 0.12 0.12
Matches are distributed among these distances:
28 2 0.01
29 36 0.22
30 88 0.54
31 36 0.22
ACGTcount: A:0.42, C:0.03, G:0.20, T:0.35
Consensus pattern (29 bp):
AAAAGTTTAAGGGTCAAAATGTAATTTTA
Found at i:95379 original size:59 final size:58
Alignment explanation
Indices: 95175--95393 Score: 208
Period size: 59 Copynumber: 3.7 Consensus size: 58
95165 TAAAATATTT
* * * *
95175 TTTTGGAAAAGTTT-AGGGTTAAAATATAA-TTTTAAAGAAGTTTAGGGGTCAAAATATCA
1 TTTTGGAAAAGTTTAAGGGTTAAAATGTAATTTTTAAA-AA-TTTAAGGGT-AAAATGTAA
** * * ** *
95234 TTTTTAAAAAGTTTTAAGGGTCAAAATGCAATTTTGGAAAATTTTAGTGGCTAAAATGTAA
1 TTTTGGAAAAG-TTTAAGGGTTAAAATGTAATTTTTAAAAATTTAAG-GG-TAAAATGTAA
* * *
95295 TTTTAGATAAGTTTAAGGGTTAAAATGTAATTTTTAAAAAATTAAGGGTAAAAATGTAA
1 TTTTGGAAAAGTTTAAGGGTTAAAATGTAATTTTTAAAAATTTAAGGGT-AAAATGTAA
* * *
95354 ATTTGGAAAAGTTTAAGGGTGAAAATGTAATTTTTGAAAA
1 TTTTGGAAAAGTTTAAGGGTTAAAATGTAATTTTTAAAAA
95394 GTTTGGGGGT
Statistics
Matches: 129, Mismatches: 25, Indels: 12
0.78 0.15 0.07
Matches are distributed among these distances:
58 1 0.01
59 55 0.43
60 36 0.28
61 31 0.24
62 6 0.05
ACGTcount: A:0.42, C:0.02, G:0.19, T:0.37
Consensus pattern (58 bp):
TTTTGGAAAAGTTTAAGGGTTAAAATGTAATTTTTAAAAATTTAAGGGTAAAATGTAA
Found at i:95421 original size:89 final size:88
Alignment explanation
Indices: 95176--95411 Score: 269
Period size: 89 Copynumber: 2.6 Consensus size: 88
95166 AAAATATTTT
* * *
95176 TTTGGAAAAGTTTAGGGTTAAAATATAA-TTTTAAAGAAGTTTAGGGGTCAAAATATCATTTTTA
1 TTTGGAAAAGTTTAGGG-TAAAATGTAATTTTTGAA-AAGTTTAGGGGTCAAAATATAATTTTTA
* * *
95240 AAAAGTTTTAAGGGTCAAAATGCAAT
64 AAAAG-ATTAAGGGTAAAAATGCAAA
* * * * * *
95266 TTTGGAAAATTTTAGTGGCTAAAATGTAATTTTAGATAAGTTTAAGGGTTAAAATGTAATTTTTA
1 TTTGGAAAAGTTTAG-GG-TAAAATGTAATTTTTGAAAAGTTTAGGGGTCAAAATATAATTTTTA
*
95331 AAAA-ATTAAGGGTAAAAATGTAAA
64 AAAAGATTAAGGGTAAAAATGCAAA
*
95355 TTTGGAAAAGTTTAAGGGTGAAAATGTAATTTTTGAAAAGTTTGGGGGTCAAAATAT
1 TTTGGAAAAGTTT-AGGGT-AAAATGTAATTTTTGAAAAGTTTAGGGGTCAAAATAT
95412 GGGTTTTAAA
Statistics
Matches: 121, Mismatches: 21, Indels: 9
0.80 0.14 0.06
Matches are distributed among these distances:
88 1 0.01
89 61 0.50
90 16 0.13
91 39 0.32
92 4 0.03
ACGTcount: A:0.41, C:0.03, G:0.20, T:0.36
Consensus pattern (88 bp):
TTTGGAAAAGTTTAGGGTAAAATGTAATTTTTGAAAAGTTTAGGGGTCAAAATATAATTTTTAAA
AAGATTAAGGGTAAAAATGCAAA
Found at i:104548 original size:17 final size:17
Alignment explanation
Indices: 104526--104563 Score: 67
Period size: 17 Copynumber: 2.2 Consensus size: 17
104516 CGTGCTATGT
104526 GACATTAATAATGCAAG
1 GACATTAATAATGCAAG
*
104543 GACATTAATAATGCGAG
1 GACATTAATAATGCAAG
104560 GACA
1 GACA
104564 ATTATATTAC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.45, C:0.13, G:0.21, T:0.21
Consensus pattern (17 bp):
GACATTAATAATGCAAG
Found at i:113916 original size:77 final size:76
Alignment explanation
Indices: 113815--113976 Score: 288
Period size: 77 Copynumber: 2.1 Consensus size: 76
113805 ACCACATTAC
* * *
113815 GCAGCTTGAGTAGGAACCTAATGCCAGAATTCCTTGTGTTCCCTCAAATCATCCATGAAGCTACT
1 GCAGCCTGGGTAGGAACCTAATGCCAGAATTCCTTGTGTTCCCTCAAATCATCCATGAAGCCACT
113880 CCATCATCAGA
66 CCATCATCAGA
113891 GCAGCCTGGNGTAGGAACCTAATGCCAGAATTCCTTGTGTTCCCTCAAATCATCCATGAAGCCAC
1 GCAGCCTGG-GTAGGAACCTAATGCCAGAATTCCTTGTGTTCCCTCAAATCATCCATGAAGCCAC
113956 TCCATCATCAGA
65 TCCATCATCAGA
113968 GCAGCCTGG
1 GCAGCCTGG
113977 TTTGGAAGGC
Statistics
Matches: 82, Mismatches: 3, Indels: 1
0.95 0.03 0.01
Matches are distributed among these distances:
76 7 0.09
77 75 0.91
ACGTcount: A:0.27, C:0.29, G:0.19, T:0.24
Consensus pattern (76 bp):
GCAGCCTGGGTAGGAACCTAATGCCAGAATTCCTTGTGTTCCCTCAAATCATCCATGAAGCCACT
CCATCATCAGA
Found at i:114541 original size:13 final size:13
Alignment explanation
Indices: 114523--114547 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
114513 AGGCACAAAC
114523 GAAAAGCAAAGAA
1 GAAAAGCAAAGAA
114536 GAAAAGCAAAGA
1 GAAAAGCAAAGA
114548 GGAGCACCCA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.68, C:0.08, G:0.24, T:0.00
Consensus pattern (13 bp):
GAAAAGCAAAGAA
Found at i:123671 original size:26 final size:26
Alignment explanation
Indices: 123605--123672 Score: 66
Period size: 26 Copynumber: 2.6 Consensus size: 26
123595 TATTATGCCT
* * *
123605 AGAAATGTCACTGCAGGAACCTGTCC
1 AGAAGTGTCACTGCATGAAACTGTCC
* * *
123631 AGAAGTATCAATGCATGAAATTGTCC
1 AGAAGTGTCACTGCATGAAACTGTCC
123657 AG-AGTTGTCACTGCAT
1 AGAAG-TGTCACTGCAT
123673 AAGATGATCC
Statistics
Matches: 33, Mismatches: 8, Indels: 2
0.77 0.19 0.05
Matches are distributed among these distances:
25 2 0.06
26 31 0.94
ACGTcount: A:0.32, C:0.21, G:0.22, T:0.25
Consensus pattern (26 bp):
AGAAGTGTCACTGCATGAAACTGTCC
Found at i:145643 original size:20 final size:21
Alignment explanation
Indices: 145593--145665 Score: 60
Period size: 20 Copynumber: 3.5 Consensus size: 21
145583 GAAAAGTTTG
* * *
145593 AAATAATTTTAAAATCAAGTTA
1 AAATCATTTTAAACT-AAGTCA
* *
145615 AAATGATTTTAAAC-ATGTCA
1 AAATCATTTTAAACTAAGTCA
* *
145635 AAATTA-TTTGAACTAAGTCA
1 AAATCATTTTAAACTAAGTCA
145655 AAATCATTTTA
1 AAATCATTTTA
145666 TCCTTTAAAT
Statistics
Matches: 40, Mismatches: 9, Indels: 5
0.74 0.17 0.09
Matches are distributed among these distances:
19 6 0.15
20 19 0.47
21 3 0.08
22 12 0.30
ACGTcount: A:0.48, C:0.08, G:0.07, T:0.37
Consensus pattern (21 bp):
AAATCATTTTAAACTAAGTCA
Found at i:152955 original size:35 final size:35
Alignment explanation
Indices: 152915--152985 Score: 142
Period size: 35 Copynumber: 2.0 Consensus size: 35
152905 TTTTACCACT
152915 GGTTGAGTTCGCCTACAATAATAGTTATCAAGCCA
1 GGTTGAGTTCGCCTACAATAATAGTTATCAAGCCA
152950 GGTTGAGTTCGCCTACAATAATAGTTATCAAGCCA
1 GGTTGAGTTCGCCTACAATAATAGTTATCAAGCCA
152985 G
1 G
152986 TATTAAGACG
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 36 1.00
ACGTcount: A:0.31, C:0.20, G:0.21, T:0.28
Consensus pattern (35 bp):
GGTTGAGTTCGCCTACAATAATAGTTATCAAGCCA
Found at i:163361 original size:14 final size:14
Alignment explanation
Indices: 163342--163371 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
163332 TTGCTAAATC
*
163342 TTCTTCTATTGAAT
1 TTCTTCAATTGAAT
163356 TTCTTCAATTGAAT
1 TTCTTCAATTGAAT
163370 TT
1 TT
163372 TGTTCTTTGT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.23, C:0.13, G:0.07, T:0.57
Consensus pattern (14 bp):
TTCTTCAATTGAAT
Done.