Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01013515.1 Kokia drynarioides strain JFW-HI SEQ_128541, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 964

Length: 1607
ACGTcount: A:0.33, C:0.20, G:0.17, T:0.30


Found at i:888 original size:17 final size:17

Alignment explanation


    Indices: 855--886  Score: 57
    Period size: 17  Copynumber: 1.9  Consensus size: 17

        845 AAATCAGATA

                             
        855 AAAAATTTAATAAAAAG
          1 AAAAATTTAATAAAAAG

                            
        872 AAAAATTT-ATAAAAA
          1 AAAAATTTAATAAAAA

        887 AGGAAGAACA


Statistics
Matches: 15,  Mismatches: 0, Indels: 1
        0.94            0.00        0.06

Matches are distributed among these distances:
  16    7  0.47
  17    8  0.53

ACGTcount: A:0.72, C:0.00, G:0.03, T:0.25


Consensus pattern (17 bp):   
AAAAATTTAATAAAAAG
Done.