Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01013518.1 Kokia drynarioides strain JFW-HI SEQ_128544, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3913
ACGTcount: A:0.39, C:0.12, G:0.13, T:0.34

Warning! 10 characters in sequence are not A, C, G, or T


Found at i:571 original size:26 final size:25

Alignment explanation


    Indices: 531--589  Score: 82
    Period size: 26  Copynumber: 2.3  Consensus size: 25

        521 AAAATTTCTA

                 *                   
        531 ATTAAAATGTGTTAGAAATTTTAAC
          1 ATTAATATGTGTTAGAAATTTTAAC

                                   ** 
        556 ATTAATATGATGTTAGAAATTTTGGC
          1 ATTAATATG-TGTTAGAAATTTTAAC

                    
        582 ATTAATAT
          1 ATTAATAT

        590 AATTTTTTTC


Statistics
Matches: 30,  Mismatches: 3, Indels: 1
        0.88            0.09        0.03

Matches are distributed among these distances:
  25    8  0.27
  26   22  0.73

ACGTcount: A:0.41, C:0.03, G:0.14, T:0.42


Consensus pattern (25 bp):   
ATTAATATGTGTTAGAAATTTTAAC

Found at i:2311 original size:26 final size:25

Alignment explanation


    Indices: 2271--2329  Score: 82
    Period size: 26  Copynumber: 2.3  Consensus size: 25

       2261 AAAATTTCTA

                 *                   
       2271 ATTAAAATGTGTTAGAAATTTTAAC
          1 ATTAATATGTGTTAGAAATTTTAAC

                                   ** 
       2296 ATTAATATGATGTTAGAAATTTTGGC
          1 ATTAATATG-TGTTAGAAATTTTAAC

                    
       2322 ATTAATAT
          1 ATTAATAT

       2330 AATTTTTTTC


Statistics
Matches: 30,  Mismatches: 3, Indels: 1
        0.88            0.09        0.03

Matches are distributed among these distances:
  25    8  0.27
  26   22  0.73

ACGTcount: A:0.41, C:0.03, G:0.14, T:0.42


Consensus pattern (25 bp):   
ATTAATATGTGTTAGAAATTTTAAC
Done.