Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01013519.1 Kokia drynarioides strain JFW-HI SEQ_128545, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3138
ACGTcount: A:0.27, C:0.15, G:0.16, T:0.40

Warning! 50 characters in sequence are not A, C, G, or T


Found at i:859 original size:19 final size:19

Alignment explanation


    Indices: 824--861  Score: 51
    Period size: 19  Copynumber: 2.0  Consensus size: 19

        814 ATCAAAAAGT

                        *      
        824 CGAGAAAAAAAGTAAAATA
          1 CGAGAAAAAAAGAAAAATA

                                
        843 CGAGAAAAATAA-AAAAATA
          1 CGAGAAAAA-AAGAAAAATA

        862 AAAAAAATTT


Statistics
Matches: 17,  Mismatches: 1, Indels: 2
        0.85            0.05        0.10

Matches are distributed among these distances:
  19   15  0.88
  20    2  0.12

ACGTcount: A:0.71, C:0.05, G:0.13, T:0.11


Consensus pattern (19 bp):   
CGAGAAAAAAAGAAAAATA

Found at i:1611 original size:19 final size:19

Alignment explanation


    Indices: 1576--1613  Score: 51
    Period size: 19  Copynumber: 2.0  Consensus size: 19

       1566 ATCAAAAAGT

                        *      
       1576 CGAGAAAAAAAGTAAAATA
          1 CGAGAAAAAAAGAAAAATA

                                
       1595 CGAGAAAAATAA-AAAAATA
          1 CGAGAAAAA-AAGAAAAATA

       1614 AAAAAAAATT


Statistics
Matches: 17,  Mismatches: 1, Indels: 2
        0.85            0.05        0.10

Matches are distributed among these distances:
  19   15  0.88
  20    2  0.12

ACGTcount: A:0.71, C:0.05, G:0.13, T:0.11


Consensus pattern (19 bp):   
CGAGAAAAAAAGAAAAATA
Done.