Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01013520.1 Kokia drynarioides strain JFW-HI SEQ_128546, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 13260
ACGTcount: A:0.33, C:0.14, G:0.18, T:0.34


Found at i:5573 original size:14 final size:14

Alignment explanation


    Indices: 5556--5582  Score: 54
    Period size: 14  Copynumber: 1.9  Consensus size: 14

       5546 ATTATAAAAA

                          
       5556 TATAATAATTAAAG
          1 TATAATAATTAAAG

                         
       5570 TATAATAATTAAA
          1 TATAATAATTAAA

       5583 TTTCAATTTT


Statistics
Matches: 13,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  14   13  1.00

ACGTcount: A:0.59, C:0.00, G:0.04, T:0.37


Consensus pattern (14 bp):   
TATAATAATTAAAG
Done.