Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01013522.1 Kokia drynarioides strain JFW-HI SEQ_128548, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1714
ACGTcount: A:0.32, C:0.13, G:0.17, T:0.38


Found at i:1148 original size:10 final size:10

Alignment explanation


    Indices: 1133--1163  Score: 62
    Period size: 10  Copynumber: 3.1  Consensus size: 10

       1123 TCTCTCTCTA

                      
       1133 ATTTTCTTGC
          1 ATTTTCTTGC

                      
       1143 ATTTTCTTGC
          1 ATTTTCTTGC

                      
       1153 ATTTTCTTGC
          1 ATTTTCTTGC

             
       1163 A
          1 A

       1164 AAACCACCTT


Statistics
Matches: 21,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  10   21  1.00

ACGTcount: A:0.13, C:0.19, G:0.10, T:0.58


Consensus pattern (10 bp):   
ATTTTCTTGC
Done.