genome.fa.s13524.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01013524.1 Kokia drynarioides strain JFW-HI SEQ_128550, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  88695

Tables:   1   

This is table  1  of  1  ( 48 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14379--14424	22	2.1	22	84	8	58	39	0	2	58	1.10
21986--22030	18	2.5	18	81	0	54	37	22	20	20	1.94
29815--29853	21	1.9	21	89	5	62	12	12	7	66	1.43
32744--32794	25	2.0	27	85	14	72	78	0	17	3	0.90
32753--32793	12	3.3	13	80	10	50	80	0	17	2	0.82
39221--39405	96	1.9	96	82	8	234	36	14	18	29	1.91
39762--39924	86	1.9	87	88	3	249	36	2	26	34	1.70
39700--40038	29	11.6	29	77	9	235	36	3	24	35	1.72
39848--40009	30	5.5	30	84	6	179	38	4	22	35	1.74
39820--40050	59	3.9	58	81	6	218	37	3	24	35	1.71
41129--41189	27	2.2	28	85	8	81	34	4	6	54	1.48
41839--41868	14	2.1	15	93	6	53	20	6	20	53	1.67
41866--41936	17	4.1	17	79	1	79	50	1	2	45	1.25
42306--42376	37	1.9	37	82	5	90	18	21	19	40	1.91
42260--42863	205	2.9	205	86	0	796	22	23	19	35	1.96
42763--42969	115	1.8	114	89	3	326	21	23	18	36	1.95
52679--52719	21	2.0	21	100	0	82	12	24	24	39	1.89
54097--54281	96	1.9	96	80	10	218	37	15	17	29	1.90
54554--54709	29	5.4	30	70	16	96	31	6	30	31	1.83
54663--54768	29	3.6	29	78	3	97	37	1	26	33	1.68
55960--56003	3	14.7	3	85	0	61	31	2	2	63	1.19
55960--56030	18	3.7	21	76	16	73	32	4	5	57	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55960--56028	36	1.9	36	90	0	111	31	4	5	57	1.42
56715--56778	11	5.7	11	74	15	51	57	1	1	39	1.17
56705--56775	17	4.1	17	83	1	88	50	1	2	45	1.25
56705--56768	6	11.0	6	75	18	55	50	1	3	45	1.27
57402--57458	9	6.8	8	76	15	53	68	1	26	3	1.15
57851--57893	17	2.5	17	88	0	59	23	11	11	53	1.69
59776--59808	16	2.1	16	94	0	57	51	0	9	39	1.34
60260--60440	90	2.0	90	97	0	344	34	13	22	29	1.92
63044--63101	26	2.2	26	90	0	89	46	17	12	24	1.81
68196--68230	3	11.7	3	100	0	70	65	0	0	34	0.93
68447--68514	26	2.6	26	88	0	100	27	23	23	25	2.00
68925--68996	15	4.9	15	73	19	71	29	19	8	43	1.80
68863--68951	40	2.2	40	81	0	106	22	20	7	49	1.74
68911--69008	28	3.4	28	88	7	133	28	20	7	43	1.78
68930--69006	14	5.2	16	73	19	78	27	20	7	44	1.79
69527--69565	21	1.9	21	89	5	62	46	23	0	30	1.53
71503--71555	6	8.3	6	77	10	52	49	18	16	15	1.80
71505--71555	19	2.6	19	81	3	57	47	19	17	15	1.83
73216--73283	25	2.7	26	86	4	102	30	25	17	26	1.97
81702--81754	28	1.9	27	92	3	88	26	11	5	56	1.56
82043--82207	57	2.9	56	82	6	206	50	10	14	24	1.74
82135--82186	26	2.0	26	88	0	77	57	9	9	23	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
82823--82864	21	2.0	21	95	0	75	38	2	23	35	1.68
83276--83540	117	2.2	119	83	9	319	31	15	15	37	1.89
83269--83540	61	4.6	60	81	8	279	31	16	15	37	1.89
88137--88190	20	2.7	20	85	0	72	29	33	7	29	1.85

Tables:   1

The End!