Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01013526.1 Kokia drynarioides strain JFW-HI SEQ_128552, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 9972
ACGTcount: A:0.35, C:0.15, G:0.16, T:0.34
Found at i:2625 original size:24 final size:24
Alignment explanation
Indices: 2580--2628 Score: 64
Period size: 24 Copynumber: 2.0 Consensus size: 24
2570 AAAGTCGAGA
*
2580 AAAAAAGAAAAAAACGAGAAAAAT
1 AAAAAAGAAAAAAACGAAAAAAAT
*
2604 AAAAAAGTAAAAAAA-TAAAAAAAT
1 AAAAAAG-AAAAAAACGAAAAAAAT
2628 A
1 A
2629 TTCTGTGGGT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
24 15 0.68
25 7 0.32
ACGTcount: A:0.82, C:0.02, G:0.08, T:0.08
Consensus pattern (24 bp):
AAAAAAGAAAAAAACGAAAAAAAT
Found at i:2627 original size:8 final size:8
Alignment explanation
Indices: 2579--2628 Score: 55
Period size: 8 Copynumber: 6.1 Consensus size: 8
2569 AAAAGTCGAG
*
2579 AAAAAAAG
1 AAAAAAAT
*
2587 AAAAAAACG
1 AAAAAAA-T
*
2596 AGAAAAAT
1 AAAAAAAT
*
2604 AAAAAAGT
1 AAAAAAAT
2612 AAAAAAAT
1 AAAAAAAT
2620 AAAAAAAT
1 AAAAAAAT
2628 A
1 A
2629 TTCTGTGGGT
Statistics
Matches: 36, Mismatches: 5, Indels: 2
0.84 0.12 0.05
Matches are distributed among these distances:
8 29 0.81
9 7 0.19
ACGTcount: A:0.82, C:0.02, G:0.08, T:0.08
Consensus pattern (8 bp):
AAAAAAAT
Found at i:4953 original size:216 final size:216
Alignment explanation
Indices: 4289--5876 Score: 1778
Period size: 216 Copynumber: 7.4 Consensus size: 216
4279 TTGTCGACGA
* * * * * *
4289 AATGGATCTTCTTATATACTCTCAGGAACCAAAGTTATAAAAGAACTCGTAAATGTTTGACAAGT
1 AATGGATCATCTTAAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGT
* * *
4354 TCAAAAGTTCATCCAAGAA-TAA-AGAGAAACAATTCTCACGTAAATAAGTTTATAATTCAAAGA
66 TCGAAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGA
* * ** * *
4417 CAAAAACTTGTTTA-ACAAATGATAAACTCTTTAGACCAAATGATGTTATTTCCCGAGCATGGAT
131 CAAAAACTTGTTTACA-AAATGACAAACTATTTAGACCAAATGATGCGATTTTCCGAGCATGGAA
* *
4481 TATTCAAAAAATTGCT-AGAAGG
195 TGTTCGAAAAATTGCTCA-AAGG
* * * * *
4503 AATGAATCATCTTGAACACTTTAAGGAACCGAAGTTATATAAGAACTCGTAAAAGTTTGACAAGA
1 AATGGATCATCTTAAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGT
* * * * * *
4568 TCGGAAGTTCATCCAAGAAGCAAGAGAGAATCATTTTTCACGTAAATAAG-TTTT-ATTCAAAGG
66 TCGAAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGA
* ** * * *
4631 CCAAAACTTGTTTACAAAACAACAAACTATTTAGACCTAATGATGCAATTTCCCGAGCATGGAAT
131 CAAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTTCCGAGCATGGAAT
*
4696 GTTCGAAAAATTGCTCAAATG
196 GTTCGAAAAATTGCTCAAAGG
* *
4717 AATGGATCATCTTGAATACTTTAAGGAACCGAGGTTATAAAAGAACTCGTAAAAGTTTGACAAGT
1 AATGGATCATCTTAAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGT
* * * * * * *
4782 TTGAAAGTTCGTCCAATAATCAAG-GCAGAAACAATTCTCATGTAAATAAGTTTTTAATTCGATG
66 TCGAAAGTTCATCCAAGAACCAAGAG-AGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAG
* * * *** * *
4846 ATAAAAACTTGTTCACAAAATGACAAATTATTTAGA-CAAATTGAAATGATTTTCTGAGCATGAA
130 ACAAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAA-TGATGCGATTTTCCGAGCATGGA
4910 ATGTTCGAAAAATTGCTCAAAGG
194 ATGTTCGAAAAATTGCTCAAAGG
* * *
4933 ATTGGATCATCTTAAATACTTTTAA-GAAACGAAATTTATAAAAGAACTCGTAAAAGTTTGACAA
1 AATGGATCATCTTAAATAC-TTTAAGGAACCG-AAGTTATAAAAGAACTCGTAAAAGTTTGACAA
* * * * *
4997 GTTCGACAGTTCGTCCAGGAACCAAGAGAAAAACAATTCTCACGTAAATAAGTTTTTAATTAAAA
64 GTTCGAAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAA
* * * * * * *
5062 AACAAGAACCTGTTTGCAAAATGACAAACTATTTAGTCCAAATGATGCGATATACCGAGCATGGA
129 GACAAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTTCCGAGCATGGA
* *
5127 ATGTTC-AGAAAATTGGTCGATA-G
194 ATGTTCGA-AAAATTGCTC-AAAGG
* ** * * * * *
5150 AATGGATCGTCTTGTATACTCTCAGGAACTGAAATTATTAAAGAACTCGTAAAAGTTTGACAAGT
1 AATGGATCATCTTAAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGT
* ** *
5215 TCAAAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAACCAAGTTTTTAATTCAAAAA
66 TCGAAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGA
* *
5280 CCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGACTTTT-CAAGCATGGAA
131 CAAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGA-TTTTCCGAGCATGGAA
*
5344 TGTTCGAAAAATTGCTCGAAGG
195 TGTTCGAAAAATTGCTCAAAGG
* *
5366 AATGGATCATCTTCAATACTTTAAGGAACCGAAGTTATAAAAAAACTCGTAAAAGTTTGACAAGT
1 AATGGATCATCTTAAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGT
* * * * * *
5431 TCGAAAGTTCATCCAAAAACCAAGGGAGAAACAATTATCATGTAAATAAGTTTTTAATTCGATGA
66 TCGAAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGA
* * * * ** *
5496 CAAAAACTTGTTCACAAAATGGCAAGCTATTTTGA-CAAATTGATGCGATTTTTTGAGCATGAAA
131 CAAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAA-TGATGCGATTTTCCGAGCATGGAA
* *
5560 TGTTC-AGAAATTTACTCAAAGG
195 TGTTCGA-AAAATTGCTCAAAGG
* * * *
5582 ATTGGATCATCTTAAATACTTTAAGAAACTGAATTTATAAAAGAACTCGTAAAAGTTTGACAAGT
1 AATGGATCATCTTAAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGT
* * *
5647 TC-AGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCGCATAAATAAGTTTTTAATTCAAAG
66 TCGA-AAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAG
* * *
5711 ATAAAAACCTGTTTACAAAATGACAAAC----TAGTCCAAATGATGCG-TTTTACCGAGCATGGA
130 ACAAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTT-CCGAGCATGGA
* * * *
5771 ATGTTCGGAAAATTGGTCGACGG
194 ATGTTCGAAAAATTGCTCAAAGG
* ** * * * * * *
5794 AATGGATCGTCTTGTATACTCTCAGGAACAGAAGTTA-AAAAGAACTCGTAAATGTTTGGCAGGT
1 AATGGATCATCTTAAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGT
* *
5858 TCAAAAGTTCATCGAAGAA
66 TCGAAAGTTCATCCAAGAA
5877 TGGATTGTTC
Statistics
Matches: 1149, Mismatches: 199, Indels: 55
0.82 0.14 0.04
Matches are distributed among these distances:
211 43 0.04
212 62 0.05
213 5 0.00
214 248 0.22
215 25 0.02
216 588 0.51
217 171 0.15
218 7 0.01
ACGTcount: A:0.41, C:0.15, G:0.16, T:0.28
Consensus pattern (216 bp):
AATGGATCATCTTAAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGT
TCGAAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGA
CAAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTTCCGAGCATGGAAT
GTTCGAAAAATTGCTCAAAGG
Found at i:7050 original size:216 final size:215
Alignment explanation
Indices: 5876--7898 Score: 2081
Period size: 216 Copynumber: 9.5 Consensus size: 215
5866 TCATCGAAGA
* * * * * **
5876 ATGGATTGTTCGAAAATTTGCTGGAAGGATTGGATCATCTTGAACACTTTAAGGAACTGAAGTTA
1 ATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAACACTTTAAGGAACCAAAGTTA
* * *
5941 TAAAAGAA-TATGTAAAAGTTTGACAA-TATCAGAAATTCATCCAAGAAGC-AAGAGAGAATCAA
66 TAAAAGAACT-CGTAAAAGTTTGACAAGT-TCAGAAGTTCATCCAAGAA-CTAAGAGAGAAACAA
* * *
6003 TTTTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATAACAAACTATTTAG
128 TTCTCATGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAG
*
6068 ACCTAATGATGCGATTTCCCGAGC
193 ATC-AATGATGCGATTTCCCGAGC
* * * * *
6092 ATGGAATGTTTGGAAAATTGCTCGAAGGAATGAATTC-TCTTGAATACTTT----AA-CGAA-TT
1 ATGGAATGTTCGAAAAATTGCTCGAAGGAATGGA-TCGTCTTGAACACTTTAAGGAACCAAAGTT
* * * *
6150 ATAAAAGAACTTGTAACAGTTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAATT
65 ATAAAAGAACTCGTAAAAGTTTGACAAGTTCAGAAGTTCATCCAAGAACTAAGAGAGAAACAATT
* * *
6215 CTCACG-AGAATAAGTTTTTAATTCAAAG-CTCAAAACTTTTTTACAAAATAACAAACTATTTAG
130 CTCATGTA-AATAAGTTTTTAATTCAAAGAC-CAAAACTTGTTTACAAAATGACAAACTATTTAG
* * *
6278 ACCAAATGATGCGACTTCTCGAGC
193 ATC-AATGATGCGATTTCCCGAGC
** * *
6302 ATGGAATGTTCGAAAAATTGCTCGAA-GAATGGATAATCTTGAATAC-TTAATGGAACCGAAGTT
1 ATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAACACTTTAA-GGAACCAAAGTT
* * * * *
6365 TTAAAAGAACTCATAAAAGTTTGA-AATTTCAAAAGTTCATCCAAGAACCAAGAGAGAAACAATT
65 ATAAAAGAACTCGTAAAAGTTTGACAAGTTCAGAAGTTCATCCAAGAACTAAGAGAGAAACAATT
** * ** * * *
6429 CTCACATAAAGAAGTTTTTAATTCAAAGGGCAAAACTTTTTTAAAAAATGACAAACTATTTAGAC
130 CTCATGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGAT
* * *
6494 CAATGATGTGACTTCCCAAGC
195 CAATGATGCGATTTCCCGAGC
* * * * * *
6515 ATGAAATGTTCGGAAAATTGCTCAAAAGAATGGATCGTCTTGAATACTTTAAGGAATCAAAGTTA
1 ATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAACACTTTAAGGAACCAAAGTTA
* * * * * *
6580 AAAAAGAACTTGTAAAAGTTTGACAAGTT-TGAAGTTCGTCCACGAAC-CA-AGAG---------
66 TAAAAGAACTCGTAAAAGTTTGACAAGTTCAGAAGTTCATCCAAGAACTAAGAGAGAAACAATTC
* * * * * **
6633 TCAAGTAAATAAGTTTCTAAATCAAAGACCAAAACTAGTTCACTGAATGACAAACTATTTAGA-C
131 TCATGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGATC
* **
6697 AGATTGTTGCGATTTTTCGAGC
196 A-A-TGATGCGATTTCCCGAGC
* * * * *
6719 ATGGAATGTTCGGAAAATTGCTGGAAGGAATGGATTGCCTTGAATACTTTAAGGAACCAAAGTTA
1 ATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAACACTTTAAGGAACCAAAGTTA
* * * * * * * * *
6784 AAAAAGAACTCGTAAAAGTTTGACAAGTTCAAAATTTCGTCCATGAACTAAAAGAAAAAAAAATC
66 TAAAAGAACTCGTAAAAGTTTGACAAGTTCAGAAGTTCATCCAAGAACTAAGAGAGAAACAATTC
* * * * *
6849 TCACGTAAAGAAGTTTTTAGTTCAAAGACCAAAACTTGTTTAAAAAATGACAAATTATTTAGATC
131 TCATGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGATC
* *
6914 AACTGGTGCGACTTCCCGAGC
196 AA-TGATGCGATTTCCCGAGC
* * *
6935 ATGGAATGTTCGAAAAATTGCTCGAAGGAATAGATCGTCTTGAACACTTTATGGAGCCAAAGTTA
1 ATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAACACTTTAAGGAACCAAAGTTA
* * *
7000 TAAAAGAACTCGTAATAGTTTGACTAGTTCAGATGTTCATCCAAGAACTAAGAGAGAAACAATTC
66 TAAAAGAACTCGTAAAAGTTTGACAAGTTCAGAAGTTCATCCAAGAACTAAGAGAGAAACAATTC
*
7065 TCATGTAAATAAGTTTTTAATTCAAAGA-CAGAAATTTGTTTACCAAAATGGA-AAACTATTTAG
131 TCATGTAAATAAGTTTTTAATTCAAAGACCA-AAACTTGTTTA-CAAAAT-GACAAACTATTTAG
* *
7128 -TCCAATTATGCGATTTACCGAGC
193 AT-CAATGATGCGATTTCCCGAGC
* * * * * **
7151 ATGGAATGTTC-AGAAAATTGATCGACGAAATGGATCGTCTTGTATACTCTT-AGGAACTGAAGT
1 ATGGAATGTTCGA-AAAATTGCTCGAAGGAATGGATCGTCTTGAACACT-TTAAGGAACCAAAGT
* * * * *
7214 TATAAAAGAACTCGTAAATGTTTGGCAAGCTCAAAAGTTCGTCCAAGAA-TAA-AGAGAAACAAT
64 TATAAAAGAACTCGTAAAAGTTTGACAAGTTCAGAAGTTCATCCAAGAACTAAGAGAGAAACAAT
* * * * *
7277 TTTCATGTAAATAAATTTATAATTCAGAGACCAAAACTTGTTTACAAAATGACAAACTTTTTAGA
129 TCTCATGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGA
* ** *
7342 TCAAATGACGTTAATTCCCGAGC
194 TC-AATGATGCGATTTCCCGAGC
* * * * *
7365 ATAGATTGTTCAAAAAATTGCTGGAAGGAATGGATCGTCTTAAACACTTTAAGGAACCAAAGTTA
1 ATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAACACTTTAAGGAACCAAAGTTA
* * ** **
7430 TAAAAGAACTCATAAAACTTTGACAA-TATTGGAAGTTCATCCAAGAAGC-AAGAGAGAGTCAAT
66 TAAAAGAACTCGTAAAAGTTTGACAAGT-TCAGAAGTTCATCCAAGAA-CTAAGAGAGAAACAAT
* *
7493 TTTCATGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATAACAAACTATTTAGA
129 TCTCATGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGA
* *
7558 CCTAATGATGCGATTTCTCGAGC
194 TC-AATGATGCGATTTCCCGAGC
* * * * *
7581 ATGGAATGTTCGAAAAATTGCTCAAAGAAATGGATTC-TCTTGAATACTTTAACGAACTAAAGTT
1 ATGGAATGTTCGAAAAATTGCTCGAAGGAATGGA-TCGTCTTGAACACTTTAAGGAACCAAAGTT
* * * *
7645 ATAAAAGAACTCGTAACAGTTTGACAAGTTCAGAAATT-AGTCCAAGAACCAAGAGAGAAATAAT
65 ATAAAAGAACTCGTAAAAGTTTGACAAGTTCAGAAGTTCA-TCCAAGAACTAAGAGAGAAACAAT
* * * * *
7709 TCTCACGTTAATAATTTTTTAATTCAAAGACCAAAACTTGTTTACAAAAATGACAAACTTTTTAA
129 TCTCATGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTAC-AAAATGACAAACTATTTAG
* ** *
7774 ACTAAATGATGTTATTTCCCAAGC
193 A-TCAATGATGCGATTTCCCGAGC
* * * * *
7798 ATGGATTGTTCGAAAAATTGTTGGAAGGAATGGATCATCTTGAACACTTTAAGGAACCGAAGTTA
1 ATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAACACTTTAAGGAACCAAAGTTA
* *
7863 TAAAAGAACTCGTAAAAGTTTGACAAGATCGGAAGT
66 TAAAAGAACTCGTAAAAGTTTGACAAGTTCAGAAGT
7899 AAACTTTTAC
Statistics
Matches: 1508, Mismatches: 242, Indels: 113
0.81 0.13 0.06
Matches are distributed among these distances:
202 2 0.00
203 51 0.03
204 98 0.06
205 14 0.01
206 1 0.00
207 3 0.00
208 3 0.00
209 19 0.01
210 159 0.11
211 5 0.00
212 8 0.01
213 62 0.04
214 309 0.20
215 44 0.03
216 583 0.39
217 145 0.10
218 2 0.00
ACGTcount: A:0.40, C:0.14, G:0.17, T:0.28
Consensus pattern (215 bp):
ATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAACACTTTAAGGAACCAAAGTTA
TAAAAGAACTCGTAAAAGTTTGACAAGTTCAGAAGTTCATCCAAGAACTAAGAGAGAAACAATTC
TCATGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGATC
AATGATGCGATTTCCCGAGC
Found at i:7454 original size:646 final size:638
Alignment explanation
Indices: 5876--7889 Score: 2259
Period size: 646 Copynumber: 3.1 Consensus size: 638
5866 TCATCGAAGA
* * * * * * *
5876 ATGGATTGTTCGAAAATTTGCTGGAAGGATTGGATCATCTTGAACACTTTAAGGAACTGAAGTTA
1 ATGGAATGTTCGAAAA-TTGATCGAAGAAATGGATCGTCTTGAATACTTTAAGGAACTGAAGTTA
* * *
5941 TAAAAGAA-TATGTAAAAGTTTGACAATATCAGAAA-TTCATCCAAGAAGCAAGAGAGAATCAAT
65 TAAAAGAACT-CGTAAAAGTTTGACAA-GTCA-AAAGTTCGTCCAAGAA-CAA-AGAGAA-CAAT
* * *
6004 TTTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATAACAAACTATTTAGA
124 TTTCAAGTAAATAAGTTTATAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGA
* * * *
6069 CCTAATGATGCGATTTCCCGAGCATGGAATGTTTGGAAAATTGCTCGAAGGAATGAATTC-TCTT
189 -CAAATGATGCGATTTCCCGAGCATGGAATGTTCGGAAAATTGCTGGAAGGAATGGA-TCGTCTT
* * *
6133 GAATACTTT----AA-CGAA-TTATAAAAGAACTTGTAACAGTTTGACAAGTTCAGAAGTTCGTC
252 GAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCAGAAGTTCGTC
*
6192 CAAGAACCAAGAGAGAAACAATTCTCACG-AGAATAAGTTTTTAATTCAAAG-CTCAAAACTTTT
317 CAAGAA-CAAGAGAGAAACAATTCTCACGTA-AATAAGTTTTTAATTCAAAGAC-CAAAACTTGT
6255 TTACAAAATAACAAACTATTTAGACCAAATGATGCGACTTCTCGAGCATGGAATGTTCGAAAAAT
379 TTACAAAATAACAAACTATTTAGACC-AATGATGCGACTTCTCGAGCATGGAATGTTCGAAAAAT
* * * * *
6320 TGCTCGAA-GAATGGATAATCTTGAATACTTAATGGAACCGAAGTTTTAAAAGAACTCATAAAAG
443 TGCTCGAAGGAATGGAT-CTCTTGAATACTTTATGGAACCAAAGTTATAAAAGAACTCGTAAAAG
* * * *
6384 TTTGA-AATTTCAAAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACATAAAGAAGTTTTT
507 TTTGACAAGTTCAGAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
* *
6448 AATTCAAAGGGCAAAACTTT-TTTA-AAAAATGACAAACTATTTAGACCAATGATGTGACTTCCC
572 AATTCAAA-GACAAAA-TTTGTTTACAAAAATGACAAACTATTTAGACCAATGATGTGATTTCCC
6511 AAGC
635 AAGC
* * * *
6515 ATGAAATGTTCGGAAAATTGCTC-AAAAGAATGGATCGTCTTGAATACTTTAAGGAA-TCAAAGT
1 ATGGAATGTTC-GAAAATTGATCGAAGA-AATGGATCGTCTTGAATACTTTAAGGAACT-GAAGT
* * *** * *
6578 TAAAAAAGAACTTGTAAAAGTTTGACAAGTTTGAAGTTCGTCCACGAACCAAGAG--------TC
63 TATAAAAGAACTCGTAAAAGTTTGACAAGTCAAAAGTTCGTCCAAGAACAAAGAGAACAATTTTC
* * * * **
6635 AAGTAAATAAGTTTCTAAATCAAAGACCAAAACTAGTTCACTGAATGACAAACTATTTAGACAGA
128 AAGTAAATAAGTTTATAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACA-A
* * ** * *
6700 TTGTTGCGATTTTTCGAGCATGGAATGTTCGGAAAATTGCTGGAAGGAATGGATTGCCTTGAATA
192 ATGATGCGATTTCCCGAGCATGGAATGTTCGGAAAATTGCTGGAAGGAATGGATCGTCTTGAATA
* * * *
6765 CTTTAAGGAACCAAAGTTAAAAAAGAACTCGTAAAAGTTTGACAAGTTCAAAATTTCGTCCATGA
257 CTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCAGAAGTTCGTCCAAGA
* * * * * * *
6830 ACTAAAAGAAAAAAAAATCTCACGTAAAGAAGTTTTTAGTTCAAAGACCAAAACTTGTTTAAAAA
322 AC-AAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAA
* * * * *
6895 ATGACAAATTATTTAGATCAACTGGTGCGACTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGA
386 ATAACAAACTATTTAGACCAA-TGATGCGACTTCTCGAGCATGGAATGTTCGAAAAATTGCTCGA
* * * * *
6960 AGGAATAGATCGTCTTGAACACTTTATGGAGCCAAAGTTATAAAAGAACTCGTAATAGTTTGACT
450 AGGAATGGATC-TCTTGAATACTTTATGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGACA
* * *
7025 AGTTCAGATGTTCATCCAAGAACTAAGAGAGAAACAATTCTCATGTAAATAAGTTTTTAATTCAA
514 AGTTCAGAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAA
* * * * * *
7090 AGACAGAAATTTGTTTACCAAAATGGA-AAACTATTTAGTCCAATTATGCGATTTACCGAGC
579 AGACA-AAATTTGTTTACAAAAAT-GACAAACTATTTAGACCAATGATGTGATTTCCCAAGC
* *
7151 ATGGAATGTTCAGAAAATTGATCGACGAAATGGATCGTCTTGTATACTCTT-AGGAACTGAAGTT
1 ATGGAATGTTC-GAAAATTGATCGAAGAAATGGATCGTCTTGAATACT-TTAAGGAACTGAAGTT
* * *
7215 ATAAAAGAACTCGTAAATGTTTGGCAAGCTCAAAAGTTCGTCCAAGAATAAAGAGAAACAATTTT
64 ATAAAAGAACTCGTAAAAGTTTGACAAG-TCAAAAGTTCGTCCAAGAACAAAGAG-AACAATTTT
* * * *
7280 CATGTAAATAAATTTATAATTCAGAGACCAAAACTTGTTTACAAAATGACAAACTTTTTAGATCA
127 CAAGTAAATAAGTTTATAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGA-CA
* ** * * * ** * *
7345 AATGACGTTAATTCCCGAGCATAGATTGTTCAAAAAATTGCTGGAAGGAATGGATCGTCTTAAAC
191 AATGATGCGATTTCCCGAGCATGGAATGTTCGGAAAATTGCTGGAAGGAATGGATCGTCTTGAAT
* * ** *
7410 ACTTTAAGGAACCAAAGTTATAAAAGAACTCATAAAACTTTGACAA-TATTGGAAGTTCATCCAA
256 ACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGT-TCAGAAGTTCGTCCAA
** * *
7474 GAAGCAAGAGAGAGTCAATTTTCATGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACA
320 GAA-CAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACA
*
7539 AAATAACAAACTATTTAGACCTAATGATGCGATTTCTCGAGCATGGAATGTTCGAAAAATTGCTC
384 AAATAACAAACTATTTAGACC-AATGATGCGACTTCTCGAGCATGGAATGTTCGAAAAATTGCTC
* * ** * *
7604 AAAGAAATGGATTCTCTTGAATACTTTAACGAACTAAAGTTATAAAAGAACTCGTAACAGTTTGA
448 GAAGGAATGGA-TCTCTTGAATACTTTATGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGA
* * * *
7669 CAAGTTCAGAAATT-AGTCCAAGAACCAAGAGAGAAATAATTCTCACGTTAATAATTTTTTAATT
512 CAAGTTCAGAAGTTCA-TCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATT
* * * * *
7733 CAAAGACCAAAACTTGTTTACAAAAATGACAAACTTTTTAAACTAAATGATGTTATTTCCCAAGC
576 CAAAGA-CAAAATTTGTTTACAAAAATGACAAACTATTTAGAC-CAATGATGTGATTTCCCAAGC
* * * * * * *
7798 ATGGATTGTTCGAAAAATTGTTGGAAGGAATGGATCATCTTGAACACTTTAAGGAACCGAAGTTA
1 ATGGAATGTTCG-AAAATTGATCGAAGAAATGGATCGTCTTGAATACTTTAAGGAACTGAAGTTA
7863 TAAAAGAACTCGTAAAAGTTTGACAAG
65 TAAAAGAACTCGTAAAAGTTTGACAAG
7890 ATCGGAAGTA
Statistics
Matches: 1139, Mismatches: 188, Indels: 88
0.80 0.13 0.06
Matches are distributed among these distances:
626 2 0.00
627 114 0.10
631 2 0.00
632 6 0.01
633 152 0.13
634 59 0.05
635 66 0.06
636 110 0.10
637 31 0.03
638 14 0.01
639 68 0.06
640 6 0.01
645 4 0.00
646 405 0.36
647 100 0.09
ACGTcount: A:0.40, C:0.14, G:0.17, T:0.28
Consensus pattern (638 bp):
ATGGAATGTTCGAAAATTGATCGAAGAAATGGATCGTCTTGAATACTTTAAGGAACTGAAGTTAT
AAAAGAACTCGTAAAAGTTTGACAAGTCAAAAGTTCGTCCAAGAACAAAGAGAACAATTTTCAAG
TAAATAAGTTTATAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACAAATGA
TGCGATTTCCCGAGCATGGAATGTTCGGAAAATTGCTGGAAGGAATGGATCGTCTTGAATACTTT
AAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCAGAAGTTCGTCCAAGAACAA
GAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATAAC
AAACTATTTAGACCAATGATGCGACTTCTCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAAT
GGATCTCTTGAATACTTTATGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCAG
AAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACAAA
ATTTGTTTACAAAAATGACAAACTATTTAGACCAATGATGTGATTTCCCAAGC
Found at i:9373 original size:215 final size:215
Alignment explanation
Indices: 7899--9972 Score: 2336
Period size: 216 Copynumber: 9.6 Consensus size: 215
7889 GATCGGAAGT
* * * * *
7899 AAACTTTTACGAGTTCTTTTATAAATTCGGTTCCTTAAAGTATTTAAGCCGATACATTCCTTCGA
1 AAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGA
* * * * * * *
7964 GAAATTTT-TCGAACATTTCATGATCAGAAAATCTCATCAATTGGTCTAAATAATTTTTCATTTT
66 GCAATTTTCT-GAACATTCCATGCTCAG-AAATCGCATCATTTGGTCTAAATAGTTTGTCATTTT
* * * * * *
8028 GTGAACAACTTTTTGTCATCGAATTAAAAACTTATTTACATGAGAATTGTTTCTCTCCAT-GTTC
129 GTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACATGAGAATTGTTTCTCT-CTTGGTTC
* * * *
8092 TTTGACAAAATTTTGAACTTGTT
193 TTGGACGAACTTTTGAACTTGTC
* *
8115 AAACTTTTACGAGTTCTTTTATTACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCTTTCGA
1 AAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGA
* * * *
8180 GAAATTTT-TCGAGCATTCCATGCTCAGGAAATCGCATCATTTGGTCTAAAAAGTTTGTCGTTTT
66 GCAATTTTCT-GAACATTCCATGCTCA-GAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTT
* * *
8244 GTAAACAAGTTTTGGTCTGTGAATTAAAAAACTTATTTACATGAGAATTATTTCTCTCTTAGTTC
129 GTAAACAAGTTTTGGTCTTTGAATT-AAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTC
*
8309 TTGGACGAACTTCTGAACTTGTC
193 TTGGACGAACTTTTGAACTTGTC
* * * * * **
8332 AAACGTTTAC-ATGTTCTTTTATAACTTCGGTTCCTTAAAGAATTCAAGACGATTCATTCATTAA
1 AAACTTTTACGA-GTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCG
* ** * * * *
8396 AGCAAATTTCCAAACAATCTATGCTCTAGAAATCGCATCACTTGGTCTAAATAGTTTATCATTTT
65 AGCAATTTTCTGAACATTCCATGCTC-AGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTT
* * * * * *
8461 GTAAACAAGTTTTTGTCTGTGAATTAAATACTTATTTACGTGAGAATTGTTTATCTATTGGTTCT
129 GTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCT
**
8526 TGGACGAA-TTTTCGAACTCATC
194 TGGACGAACTTTT-GAACTTGTC
* * * * * *
8548 AAACTGTTACGAGTTCTTTTATAACTTGGGTTCCATAAAGTATTCAACATGATACATTCCTTCGA
1 AAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGA
* * * * *
8613 GCAATTTTCTGAATATTCCATGCTCGAGAAGTCGCATCATTTAGTCTAAATAATTTGTCATTTTT
66 GCAATTTTCTGAACATTCCATGCTC-AGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTG
* * * *
8678 TAAACAAGTTTTGGTCTTTGAATTAAAAATTTCTTTACGTGAGAATTGTTTCTCTCTTGGTTCAT
130 TAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTT
* *
8743 GGACGAACTTTCGTACTTGTC
195 GGACGAACTTTTGAACTTGTC
* * * *
8764 AAACTTTTACGAGTTCTTTTATTACTTCGGTTCCTTAAAGTATTCAAGGCGATACATTCCTTCGA
1 AAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGA
* * * * *
8829 GCAATTTTTCT-AACATTCCATGGTTCAAAAATCGCAACAATCT-GTCTAAATAGTTTATCATTT
66 GCAA-TTTTCTGAACATTCCAT-GCTCAGAAATCGCATC-ATTTGGTCTAAATAGTTTGTCATTT
* * *
8892 TGTAAACAAGTTTTGGTCTTTGAATGAAAAACTTTTTTACATGAGAATTGTTTCTCTCTTAGTTC
128 TGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTC
* * **
8957 GTGGAAGAACTTTCAAACTTGTC
193 TTGGACGAACTTTTGAACTTGTC
* *
8980 AAACTTTTACGAGTTCTTTTATAAATTTGGTTCCTTAAAGTATTCAAGACAATCCATT-CTTCGA
1 AAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGA
* * * * * * *
9044 -CAATTTT-TCAAACATTTCACGTTCTAGAAGTCGCATCATTCGGTCTAAATAGTTTGTTATTTT
66 GCAATTTTCT-GAACATTCCATGCTC-AGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTT
* * * *
9107 GTAAA-AAGTTTTGGGCTTTGGATTAAAAACTTATTTACGTTAGAATTGTTTCTCTCTTGGTTCT
129 GTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCT
*
9171 TGGACGAAATTTTGAACTTGTC
194 TGGACGAACTTTTGAACTTGTC
* * * * *
9193 AAACTGTTATGAGTTCTTTTATAACTTTGGTT-CTTGAGAGTATACAAGATGATCCATTCCTTCG
1 AAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTT-AAAGTATTCAAGACGATCCATTCCTTCG
* * * *
9257 ACCAATTTTCTGAACATTCCATGCTCAGTAAATCGCATCATTTGGCCTAAATAATTTGTCAATTT
65 AGCAATTTTCTGAACATTCCATGCTCAG-AAATCGCATCATTTGGTCTAAATAGTTTGTCATTTT
* *
9322 GTAAATAGGTTTT-GTCTTTGAATTAAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCT
129 GTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCT
*
9386 TGGACGAACTTTTGAACTTGTT
194 TGGACGAACTTTTGAACTTGTC
* * * * * *
9408 AAACTTTTTCGAGTTCTTTTATAAATTCT-ATTCCTTAAAGTATTTAA-TCTGATCCATTCCTTT
1 AAACTTTTACGAGTTCTTTTATAACTT-TGGTTCCTTAAAGTATTCAAGAC-GATCCATTCCTTC
** * * * * * * *
9471 GAAAAAATTTTC-AAACCTTTCATTCTCAAAAAATCACATCAATTGGTCTAAATAGTTTGTCATT
64 G-AGCAATTTTCTGAACATTCCATGCTC-AGAAATCGCATCATTTGGTCTAAATAGTTTGTCATT
* * * * *
9535 TTGTGAACAAGTTTTTGTCATCGAATTAAAAACTTATTTACATGAGAATT-ATT-TCTC-TGGTT
127 TTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTT
* * *
9597 CTTGGACGAACTTTCGAAATTATC
192 CTTGGACGAACTTTTGAACTTGTC
** * *
9621 AAACTTTTACGAGTTCTTTTATAACTCCGGTTCTTTAAAGTATTCAAGATGATCCATTCCTTCGA
1 AAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGA
* * ** * *
9686 TCAATTTTTTGAACATTCCATGCTTGGGAAATCACATCATTTGGTCTAAAGAGTTTGTCATTTTG
66 GCAATTTTCTGAACATTCCATGC-TCAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTG
* * * *
9751 TTAACAAGTTTTGGTCTTTGAATTAAAAAATTATTTACGTGAGAATTCTTTCTCTCTTGGTTCTT
130 TAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTT
* *
9816 GGACGAACTTTCGAACTAGTC
195 GGACGAACTTTTGAACTTGTC
* * * *
9837 AAACTTTGAAGAGTTGTTTTATAACTTTGGTTCCTTAACGT-TTCAAGACGATCCATTCCTTCGA
1 AAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGA
** * * *
9901 GCAATTTT-TCGAACATTCCATGCATGGGAAATTGCATTATTTGGTCAAAATAGTTTGTCATTTT
66 GCAATTTTCT-GAACATTCCATGC-TCAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTT
9965 GTAAACAA
129 GTAAACAA
Statistics
Matches: 1571, Mismatches: 251, Indels: 73
0.83 0.13 0.04
Matches are distributed among these distances:
212 11 0.01
213 288 0.18
214 60 0.04
215 317 0.20
216 696 0.44
217 198 0.13
218 1 0.00
ACGTcount: A:0.29, C:0.16, G:0.14, T:0.41
Consensus pattern (215 bp):
AAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGA
GCAATTTTCTGAACATTCCATGCTCAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGT
AAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTG
GACGAACTTTTGAACTTGTC
Found at i:9961 original size:428 final size:432
Alignment explanation
Indices: 7899--9972 Score: 2390
Period size: 428 Copynumber: 4.8 Consensus size: 432
7889 GATCGGAAGT
* * *
7899 AAACTTTTACGAGTTCTTTTATAAATTCGGTTCCTTAAAGTATTTAAGCCGATACATTCCTTCGA
1 AAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATACATTCCTTCGA
* * * * * * * * *
7964 GAAATTTTTCGAACATTTCATGATCAGAAAATCTCATCAATTGGTCTAAATAATTTTTCATTTTG
66 GCAATTTTTTGAACATTCCATGCTTAGAAAATCGCATCATTTGGTCTAAATAGTTTATCATTTTG
* * * * * *
8029 TGAACAACTTTTTGTCATCGAATTAAAAACTTATTTACATGAGAATTGTTTCTCTCCAT-GTTCT
131 TAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACATGAGAATTGTTTCTCT-CTTGGTTCT
* * * * * *
8093 TTGACAAAATTTTGAACTTGTTAAACTTTTACGAGTTCTTTTATTACTTTGGTTCCTTAAAGTAT
195 TGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTAT
* * * *
8158 TCAAGACGATCCATTCTTTCGAGAAATTTTTCGAGCATTCCATGCTCAGGAAATCGCATCATTTG
260 TCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCAAGAAATCGCATCATTTG
* * *
8223 GTCTAAAAAGTTTGTCGTTTTGTAAACAAGTTTTGGTCTGTGAATTAAAAAACTTATTTACATGA
325 GTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATT-AAAAACTTATTTACATGA
*
8288 GAATT-ATTTCTCTCTTAGTTCTTGGACGAAC-TTCTGAACTTGTC
389 GAATTGA-TTCTCTCTTGGTTCTTGGACGAACTTTC-GAACTTGTC
* * * * **
8332 AAACGTTTAC-ATGTTCTTTTATAACTTCGGTTCCTTAAAGAATTCAAGACGATTCATTCATTAA
1 AAACTTTTACGA-GTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATACATTCCTTCG
* *** * * *
8396 AGCAAATTTCCAAACAATCTATGCTCTAG-AAATCGCATCACTTGGTCTAAATAGTTTATCATTT
65 AGCAATTTTTTGAACATTCCATGCT-TAGAAAATCGCATCATTTGGTCTAAATAGTTTATCATTT
* * * * * *
8460 TGTAAACAAGTTTTTGTCTGTGAATTAAATACTTATTTACGTGAGAATTGTTTATCTATTGGTTC
129 TGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTC
* ** * * *
8525 TTGGACGAATTTTCGAACTCATCAAACTGTTACGAGTTCTTTTATAACTTGGGTTCCATAAAGTA
194 TTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTA
* * * * * *
8590 TTCAACATGATACATTCCTTCGAGCAA-TTTTCTGAATATTCCATGCTCGAGAAGTCGCATCATT
259 TTCAAGACGATCCATTCCTTCGAGCAATTTTTC-GAACATTCCATGCTCAAGAAATCGCATCATT
* * * * * *
8654 TAGTCTAAATAATTTGTCATTTTTTAAACAAGTTTTGGTCTTTGAATTAAAAATTTCTTTACGTG
323 TGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACATG
* * *
8719 AGAATTGTTTCTCTCTTGGTTCATGGACGAACTTTCGTACTTGTC
388 AGAATTGATTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTC
* *
8764 AAACTTTTACGAGTTCTTTTATTACTTCGGTTCCTTAAAGTATTCAAGGCGATACATTCCTTCGA
1 AAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATACATTCCTTCGA
* * *
8829 GCAATTTTTCT-AACATTCCATGGTTCA-AAAATCGCAACAATCT-GTCTAAATAGTTTATCATT
66 GCAATTTTT-TGAACATTCCATGCTT-AGAAAATCGCATC-ATTTGGTCTAAATAGTTTATCATT
* * *
8891 TTGTAAACAAGTTTTGGTCTTTGAATGAAAAACTTTTTTACATGAGAATTGTTTCTCTCTTAGTT
128 TTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTT
* * * *
8956 CGTGGAAGAACTTTCAAACTTGTCAAACTTTTACGAGTTCTTTTATAAATTTGGTTCCTTAAAGT
193 CTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGT
* * * * * * *
9021 ATTCAAGACAATCCATT-CTTCGA-CAATTTTTCAAACATTTCACGTTCTAGAAGTCGCATCATT
258 ATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCAAGAAATCGCATCATT
* * * * * *
9084 CGGTCTAAATAGTTTGTTATTTTGTAAA-AAGTTTTGGGCTTTGGATTAAAAACTTATTTACGTT
323 TGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACATG
* * *
9148 AGAATTGTTTCTCTCTTGGTTCTTGGACGAAATTTTGAACTTGTC
388 AGAATTGATTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTC
* * * * * * *
9193 AAACTGTTATGAGTTCTTTTATAACTTTGGTT-CTTGAGAGTATACAAGATGATCCATTCCTTCG
1 AAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTT-AAAGTATTCAAGACGATACATTCCTTCG
* * * * * * * *
9257 ACCAATTTTCTGAACATTCCATGCTCAGTAAATCGCATCATTTGGCCTAAATAATTTGTCAATTT
65 AGCAATTTTTTGAACATTCCATGCTTAGAAAATCGCATCATTTGGTCTAAATAGTTTATCATTTT
* *
9322 GTAAATAGGTTTT-GTCTTTGAATTAAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCT
130 GTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCT
* * * * *
9386 TGGACGAACTTTTGAACTTGTTAAACTTTTTCGAGTTCTTTTATAAATTCT-ATTCCTTAAAGTA
195 TGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTT-TGGTTCCTTAAAGTA
* * * ** * * * * * * * *
9450 TTTAA-TCTGATCCATTCCTTTGAAAAAATTTTCAAACCTTTCATTCTCAAAAAATCACATCAAT
259 TTCAAGAC-GATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCAAGAAATCGCATCATT
* * * *
9514 TGGTCTAAATAGTTTGTCATTTTGTGAACAAGTTTTTGTCATCGAATTAAAAACTTATTTACATG
323 TGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACATG
* *
9579 AGAATT-ATT-TCTC-TGGTTCTTGGACGAACTTTCGAAATTATC
388 AGAATTGATTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTC
* * * *
9621 AAACTTTTACGAGTTCTTTTATAACTCCGGTTCTTTAAAGTATTCAAGATGATCCATTCCTTCGA
1 AAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATACATTCCTTCGA
* * * * * *
9686 TCAATTTTTTGAACATTCCATGCTTGGGAAATCACATCATTTGGTCTAAAGAGTTTGTCATTTTG
66 GCAATTTTTTGAACATTCCATGCTTAGAAAATCGCATCATTTGGTCTAAATAGTTTATCATTTTG
* * * *
9751 TTAACAAGTTTTGGTCTTTGAATTAAAAAATTATTTACGTGAGAATTCTTTCTCTCTTGGTTCTT
131 TAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTT
* * * * *
9816 GGACGAACTTTCGAACTAGTCAAACTTTGAAGAGTTGTTTTATAACTTTGGTTCCTTAACGT-TT
196 GGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATT
** * *
9880 CAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCAT-GGGAAATTGCATTATTTG
261 CAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGC-TCAAGAAATCGCATCATTTG
*
9944 GTCAAAATAGTTTGTCATTTTGTAAACAA
325 GTCTAAATAGTTTGTCATTTTGTAAACAA
Statistics
Matches: 1375, Mismatches: 240, Indels: 57
0.82 0.14 0.03
Matches are distributed among these distances:
427 1 0.00
428 339 0.25
429 293 0.21
430 107 0.08
431 47 0.03
432 282 0.21
433 304 0.22
434 2 0.00
ACGTcount: A:0.29, C:0.16, G:0.14, T:0.41
Consensus pattern (432 bp):
AAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATACATTCCTTCGA
GCAATTTTTTGAACATTCCATGCTTAGAAAATCGCATCATTTGGTCTAAATAGTTTATCATTTTG
TAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTT
GGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATT
CAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCAAGAAATCGCATCATTTGG
TCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACATGAGA
ATTGATTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTC
Done.