Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01013534.1 Kokia drynarioides strain JFW-HI SEQ_128560, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3360
ACGTcount: A:0.29, C:0.19, G:0.23, T:0.28

Warning! 50 characters in sequence are not A, C, G, or T


Found at i:2789 original size:18 final size:18

Alignment explanation


    Indices: 2766--2802  Score: 74
    Period size: 18  Copynumber: 2.1  Consensus size: 18

       2756 TGTCCATACC

                              
       2766 AATGAGATGTGGAAGAAA
          1 AATGAGATGTGGAAGAAA

                              
       2784 AATGAGATGTGGAAGAAA
          1 AATGAGATGTGGAAGAAA

             
       2802 A
          1 A

       2803 CTCTAACTAA


Statistics
Matches: 19,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  18   19  1.00

ACGTcount: A:0.51, C:0.00, G:0.32, T:0.16


Consensus pattern (18 bp):   
AATGAGATGTGGAAGAAA
Done.