Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01013540.1 Kokia drynarioides strain JFW-HI SEQ_128566, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 13814
ACGTcount: A:0.34, C:0.18, G:0.16, T:0.33


Found at i:11442 original size:31 final size:32

Alignment explanation


    Indices: 11406--11466  Score: 99
    Period size: 31  Copynumber: 1.9  Consensus size: 32

      11396 TTTTTTAGTT

                                             
      11406 TAATTTGGTA-CTCAAACTTGACA-TTTTTTCC
          1 TAATTTGGTACCT-AAACTTGACACTTTTTTCC

                                          
      11437 TAATTTGGTACCTAAACTTGACACTTTTTT
          1 TAATTTGGTACCTAAACTTGACACTTTTTT

      11467 AAGTTGATAC


Statistics
Matches: 28,  Mismatches: 0, Indels: 3
        0.90            0.00        0.10

Matches are distributed among these distances:
  31   20  0.71
  32    8  0.29

ACGTcount: A:0.26, C:0.18, G:0.10, T:0.46


Consensus pattern (32 bp):   
TAATTTGGTACCTAAACTTGACACTTTTTTCC

Found at i:11786 original size:57 final size:55

Alignment explanation


    Indices: 11709--11815  Score: 142
    Period size: 55  Copynumber: 1.9  Consensus size: 55

      11699 TTGAAACTGA

                           *               **                        
      11709 AAAAAAGCTTAGGCATCAAATTAGGAAAAAATGTCAAGTTCAGGTACCAAATAGGGT
          1 AAAAAAGCTTAGGCACCAAATTA--AAAAAAAATCAAGTTCAGGTACCAAATAGGGT

                   *     *                              *     
      11766 AAAAAAGTTTAGGTACCAAATTAAAAAAAAATCAAGTTCAGGTATCAAAT
          1 AAAAAAGCTTAGGCACCAAATTAAAAAAAAATCAAGTTCAGGTACCAAAT

      11816 GTTATATTAT


Statistics
Matches: 44,  Mismatches: 6, Indels: 2
        0.85            0.12        0.04

Matches are distributed among these distances:
  55   24  0.55
  57   20  0.45

ACGTcount: A:0.50, C:0.11, G:0.17, T:0.22


Consensus pattern (55 bp):   
AAAAAAGCTTAGGCACCAAATTAAAAAAAAATCAAGTTCAGGTACCAAATAGGGT
Done.