Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01013542.1 Kokia drynarioides strain JFW-HI SEQ_128568, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 86760
ACGTcount: A:0.34, C:0.17, G:0.18, T:0.32
Warning! 50 characters in sequence are not A, C, G, or T
Found at i:11188 original size:44 final size:44
Alignment explanation
Indices: 11138--11226 Score: 169
Period size: 44 Copynumber: 2.0 Consensus size: 44
11128 AGACAGAGAG
11138 CAAGATGATAAAATCAATGAATCGTTCTTCTCGTTCGTAGAGCT
1 CAAGATGATAAAATCAATGAATCGTTCTTCTCGTTCGTAGAGCT
*
11182 CAAGATGATAAAATCTATGAATCGTTCTTCTCGTTCGTAGAGCT
1 CAAGATGATAAAATCAATGAATCGTTCTTCTCGTTCGTAGAGCT
11226 C
1 C
11227 CCATGGGTGA
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
44 44 1.00
ACGTcount: A:0.30, C:0.19, G:0.18, T:0.33
Consensus pattern (44 bp):
CAAGATGATAAAATCAATGAATCGTTCTTCTCGTTCGTAGAGCT
Found at i:14967 original size:34 final size:34
Alignment explanation
Indices: 14924--14991 Score: 136
Period size: 34 Copynumber: 2.0 Consensus size: 34
14914 AAATCCCCTT
14924 GCTTTCTTTAAGTCTTGCAGCCCAAGCTTAATTA
1 GCTTTCTTTAAGTCTTGCAGCCCAAGCTTAATTA
14958 GCTTTCTTTAAGTCTTGCAGCCCAAGCTTAATTA
1 GCTTTCTTTAAGTCTTGCAGCCCAAGCTTAATTA
14992 ACCTAGCTAT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.24, C:0.24, G:0.15, T:0.38
Consensus pattern (34 bp):
GCTTTCTTTAAGTCTTGCAGCCCAAGCTTAATTA
Found at i:31614 original size:22 final size:22
Alignment explanation
Indices: 31586--31633 Score: 96
Period size: 22 Copynumber: 2.2 Consensus size: 22
31576 AATGTTATTA
31586 CAGCCACTGTCACTGGATAGTG
1 CAGCCACTGTCACTGGATAGTG
31608 CAGCCACTGTCACTGGATAGTG
1 CAGCCACTGTCACTGGATAGTG
31630 CAGC
1 CAGC
31634 AACAATTCAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 26 1.00
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (22 bp):
CAGCCACTGTCACTGGATAGTG
Found at i:33950 original size:15 final size:15
Alignment explanation
Indices: 33928--33966 Score: 51
Period size: 15 Copynumber: 2.6 Consensus size: 15
33918 AGAGAAGGAC
*
33928 GAGAAAGAAAATGTT
1 GAGAAAGAAAATGGT
* *
33943 GAGGAAGAAGATGGT
1 GAGAAAGAAAATGGT
33958 GAGAAAGAA
1 GAGAAAGAA
33967 TCAGATGAGG
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.51, C:0.00, G:0.36, T:0.13
Consensus pattern (15 bp):
GAGAAAGAAAATGGT
Found at i:38239 original size:195 final size:195
Alignment explanation
Indices: 37902--38280 Score: 591
Period size: 195 Copynumber: 1.9 Consensus size: 195
37892 CTAATCTAGA
* *
37902 ATCACGTGCAATTGTTTAATTTTATGTGTTCAACTTTCATTTAACTACTTATTAATATTGCAATT
1 ATCACGTGCAATAGTTTAATTTTAGGTGTTCAACTTTCATTTAACTACTTATTAATATTGCAATT
* *
37967 CGCAGTAACTGTAAGAGTTGACTTATTAAAACTTAGAACAATTTGATTTTCTTCATCTATTCTTC
66 CACAGTAACTGTAAGAGTTGAATTATTAAAACTTAGAACAATTTGATTTTCTTCATCTATTCTTC
* * *
38032 TCTATTTAACTCTCAAGAAGACATTGTGATATTTCATGCTTTGTAAAATAAAATTTGATTTTCTT
131 TCTATATAACTCTCAAGAAGACATAGTGATATTTCATGCATTGTAAAATAAAATTTGATTTTCTT
*
38097 ATCACGTGCAATAGTTTAATTTTAGGTGTTCAACTTTCATTTAACTACTTGTTAAT-TCTGCAAT
1 ATCACGTGCAATAGTTTAATTTTAGGTGTTCAACTTTCATTTAACTACTTATTAATAT-TGCAAT
* * * * *
38161 TCATAGTAA-TGTTAAGAGTTGAATTCTTAAAACTTAGTACAATTTTATTTTCTTTATCTATTCT
65 TCACAGTAACTG-TAAGAGTTGAATTATTAAAACTTAGAACAATTTGATTTTCTTCATCTATTCT
* *
38225 TCTCTATATAACTCTGAAGAAGGCATAGTGATATTTCATGCATTGTAAAATAAAAT
129 TCTCTATATAACTCTCAAGAAGACATAGTGATATTTCATGCATTGTAAAATAAAAT
38281 CAAGTAGAGA
Statistics
Matches: 167, Mismatches: 15, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
194 3 0.02
195 164 0.98
ACGTcount: A:0.32, C:0.14, G:0.11, T:0.43
Consensus pattern (195 bp):
ATCACGTGCAATAGTTTAATTTTAGGTGTTCAACTTTCATTTAACTACTTATTAATATTGCAATT
CACAGTAACTGTAAGAGTTGAATTATTAAAACTTAGAACAATTTGATTTTCTTCATCTATTCTTC
TCTATATAACTCTCAAGAAGACATAGTGATATTTCATGCATTGTAAAATAAAATTTGATTTTCTT
Found at i:58999 original size:23 final size:24
Alignment explanation
Indices: 58922--58989 Score: 111
Period size: 24 Copynumber: 2.9 Consensus size: 24
58912 AATCTTTTAG
*
58922 TTAAACTCTGTTTAATTGTTTCAA
1 TTAAACTCTGTTTATTTGTTTCAA
*
58946 TTAAACTCTGTTTATTTATTTCAA
1 TTAAACTCTGTTTATTTGTTTCAA
58970 TTAAACT-TGTTTATTTGTTT
1 TTAAACTCTGTTTATTTGTTT
58990 GAGTCAAACT
Statistics
Matches: 41, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
23 12 0.29
24 29 0.71
ACGTcount: A:0.26, C:0.10, G:0.07, T:0.56
Consensus pattern (24 bp):
TTAAACTCTGTTTATTTGTTTCAA
Found at i:60759 original size:34 final size:34
Alignment explanation
Indices: 60711--60781 Score: 124
Period size: 34 Copynumber: 2.1 Consensus size: 34
60701 TTTTCTTATA
*
60711 AATACCTATTCGAATTTTGAAATTGAGATGAGCC
1 AATACCTATACGAATTTTGAAATTGAGATGAGCC
*
60745 AATACCTATACGAATTTTGAAATTGAGATGAGTC
1 AATACCTATACGAATTTTGAAATTGAGATGAGCC
60779 AAT
1 AAT
60782 CATCCTCATT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
34 35 1.00
ACGTcount: A:0.38, C:0.13, G:0.17, T:0.32
Consensus pattern (34 bp):
AATACCTATACGAATTTTGAAATTGAGATGAGCC
Found at i:62333 original size:17 final size:17
Alignment explanation
Indices: 62301--62369 Score: 84
Period size: 17 Copynumber: 4.1 Consensus size: 17
62291 ATCAAGCCCA
* *
62301 ATTTTTAATTTTAATTT
1 ATTTTAAATTTGAATTT
*
62318 ATTTTAAGTTTGAATTT
1 ATTTTAAATTTGAATTT
** *
62335 ATTAAAAATTTAAATTT
1 ATTTTAAATTTGAATTT
62352 ATTTTAAATTTGAATTT
1 ATTTTAAATTTGAATTT
62369 A
1 A
62370 ATTAAAAATG
Statistics
Matches: 42, Mismatches: 10, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
17 42 1.00
ACGTcount: A:0.38, C:0.00, G:0.04, T:0.58
Consensus pattern (17 bp):
ATTTTAAATTTGAATTT
Found at i:62345 original size:34 final size:35
Alignment explanation
Indices: 62307--62378 Score: 119
Period size: 34 Copynumber: 2.1 Consensus size: 35
62297 CCCAATTTTT
* *
62307 AATTTTAATTTATTTTAAGTTTGAATTT-ATTAAA
1 AATTTAAATTTATTTTAAATTTGAATTTAATTAAA
62341 AATTTAAATTTATTTTAAATTTGAATTTAATTAAA
1 AATTTAAATTTATTTTAAATTTGAATTTAATTAAA
62376 AAT
1 AAT
62379 GTCCCAAGTA
Statistics
Matches: 35, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
34 26 0.74
35 9 0.26
ACGTcount: A:0.43, C:0.00, G:0.04, T:0.53
Consensus pattern (35 bp):
AATTTAAATTTATTTTAAATTTGAATTTAATTAAA
Found at i:64200 original size:59 final size:59
Alignment explanation
Indices: 64107--64268 Score: 174
Period size: 59 Copynumber: 2.8 Consensus size: 59
64097 TTTTGACCCT
* *
64107 TAAACTGTACAAAATTTACATTTTGACCCCTAAACTTTTCATAAATTAT-ATTTTAATCCC
1 TAAACTTTCCAAAA-TTACATTTTGACCCCTAAACTTTTCATAAATT-TCATTTTAATCCC
*
64167 TAAACTTTCCAAAATTACATTTTGACCCCTAAAC-TTTC-TAACAATTTCATTTTGATCCC
1 TAAACTTTCCAAAATTACATTTTGACCCCTAAACTTTTCAT-A-AATTTCATTTTAATCCC
* * * *
64226 TGAGCTTCTCAAAAATTACATTTT--CCCCTAAA-TTTTCAAAAAT
1 TAAACTT-TCCAAAATTACATTTTGACCCCTAAACTTTTCATAAAT
64269 CACATTTTTT
Statistics
Matches: 89, Mismatches: 7, Indels: 15
0.80 0.06 0.14
Matches are distributed among these distances:
57 4 0.04
58 19 0.21
59 39 0.44
60 27 0.30
ACGTcount: A:0.35, C:0.22, G:0.04, T:0.39
Consensus pattern (59 bp):
TAAACTTTCCAAAATTACATTTTGACCCCTAAACTTTTCATAAATTTCATTTTAATCCC
Found at i:64220 original size:30 final size:29
Alignment explanation
Indices: 64097--64268 Score: 129
Period size: 30 Copynumber: 5.9 Consensus size: 29
64087 AAAAATAATC
* *
64097 TTTTGACCCTTAAACTGTAC-AAAATTTACA
1 TTTTGACCCCTAAACT-TTCTAAAATTT-CA
64127 TTTTGACCCCTAAACTTT-TCATAAATTAT-A
1 TTTTGACCCCTAAACTTTCT-A-AAATT-TCA
* * * *
64157 TTTTAATCCCTAAACTTTCCAAAATTACA
1 TTTTGACCCCTAAACTTTCTAAAATTTCA
64186 TTTTGACCCCTAAACTTTCTAACAATTTCA
1 TTTTGACCCCTAAACTTTCTAA-AATTTCA
* * * * *
64216 TTTTGATCCCTGAGCTTCTCAAAAATTACA
1 TTTTGACCCCTAAACTT-TCTAAAATTTCA
* *
64246 TTTT--CCCCTAAATTTTCAAAAAT
1 TTTTGACCCCTAAACTTTCTAAAAT
64269 CACATTTTTT
Statistics
Matches: 115, Mismatches: 19, Indels: 19
0.75 0.12 0.12
Matches are distributed among these distances:
27 8 0.07
28 7 0.06
29 26 0.23
30 64 0.56
31 9 0.08
32 1 0.01
ACGTcount: A:0.34, C:0.23, G:0.04, T:0.40
Consensus pattern (29 bp):
TTTTGACCCCTAAACTTTCTAAAATTTCA
Found at i:64351 original size:29 final size:29
Alignment explanation
Indices: 64319--64388 Score: 77
Period size: 30 Copynumber: 2.4 Consensus size: 29
64309 CCGTCGTACA
64319 TCCAAAAATTACCATTTTACCCCTGAGTG
1 TCCAAAAATTACCATTTTACCCCTGAGTG
** * * *
64348 TCCAAAAAATTACTGTTTTATCCTTGGGTG
1 TCC-AAAAATTACCATTTTACCCCTGAGTG
*
64378 TCCACAAATTA
1 TCCAAAAATTA
64389 TCGCTTTACC
Statistics
Matches: 34, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
29 10 0.29
30 24 0.71
ACGTcount: A:0.31, C:0.23, G:0.11, T:0.34
Consensus pattern (29 bp):
TCCAAAAATTACCATTTTACCCCTGAGTG
Found at i:64367 original size:30 final size:30
Alignment explanation
Indices: 64322--64432 Score: 84
Period size: 29 Copynumber: 3.7 Consensus size: 30
64312 TCGTACATCC
**
64322 AAAAATTACCATTTTACCCCTGAGTGTCCA
1 AAAAATTACTGTTTTACCCCTGAGTGTCCA
* * *
64352 AAAAATTACTGTTTTATCCTTGGGTGTCC-
1 AAAAATTACTGTTTTACCCCTGAGTGTCCA
* * * ** *
64381 ACAAATTA-TCGCTTTACCGCTGAACGT-AA
1 AAAAATTACT-GTTTTACCCCTGAGTGTCCA
64410 AAAAATTACTGTTTTACACCCTG
1 AAAAATTACTGTTTTAC-CCCTG
64433 GCATCGAAAA
Statistics
Matches: 60, Mismatches: 17, Indels: 8
0.71 0.20 0.09
Matches are distributed among these distances:
28 1 0.02
29 30 0.50
30 29 0.48
ACGTcount: A:0.32, C:0.23, G:0.13, T:0.33
Consensus pattern (30 bp):
AAAAATTACTGTTTTACCCCTGAGTGTCCA
Found at i:69556 original size:7 final size:7
Alignment explanation
Indices: 69544--69637 Score: 80
Period size: 7 Copynumber: 12.4 Consensus size: 7
69534 GAAAAGAAGT
69544 AAAAGAA
1 AAAAGAA
69551 AAAAGAA
1 AAAAGAA
* *
69558 AAGACAA
1 AAAAGAA
69565 AAAAGTAAA
1 AAAAG--AA
69574 AAGAAGAA
1 AA-AAGAA
*
69582 AGAAGAGA
1 AAAAGA-A
69590 AAAAGAA
1 AAAAGAA
69597 AAAAGAA
1 AAAAGAA
69604 AAAAGAA
1 AAAAGAA
*
69611 AAAAAAA
1 AAAAGAA
69618 GGGAAAAGAA
1 ---AAAAGAA
*
69628 AATAGAA
1 AAAAGAA
69635 AAA
1 AAA
69638 TGGGAAATAG
Statistics
Matches: 70, Mismatches: 10, Indels: 14
0.74 0.11 0.15
Matches are distributed among these distances:
7 48 0.69
8 9 0.13
9 4 0.06
10 9 0.13
ACGTcount: A:0.79, C:0.01, G:0.18, T:0.02
Consensus pattern (7 bp):
AAAAGAA
Found at i:69615 original size:40 final size:37
Alignment explanation
Indices: 69535--69637 Score: 116
Period size: 39 Copynumber: 2.7 Consensus size: 37
69525 ATTTCACTCG
* * *
69535 AAAAGAAGTAAAAGAAAAAAGAAAAGACAAAAAAGTA
1 AAAAGAAGAAAAAGAAAAAAGAAAAAACAAAAAAGAA
*
69572 AAAAGAAGAAAGAAGAGAAAAAGAAAAAAGAAAAAAGAA
1 AAAAGAAGAAA-AAGA-AAAAAGAAAAAACAAAAAAGAA
* * *
69611 AAAAAAAGGGAAAAGAAAATAGAAAAA
1 AAAAGAA-GAAAAAGAAAAAAGAAAAA
69638 TGGGAAATAG
Statistics
Matches: 56, Mismatches: 7, Indels: 5
0.82 0.10 0.07
Matches are distributed among these distances:
37 10 0.18
38 14 0.25
39 29 0.52
40 3 0.05
ACGTcount: A:0.78, C:0.01, G:0.18, T:0.03
Consensus pattern (37 bp):
AAAAGAAGAAAAAGAAAAAAGAAAAAACAAAAAAGAA
Found at i:69616 original size:24 final size:23
Alignment explanation
Indices: 69535--69637 Score: 93
Period size: 25 Copynumber: 4.4 Consensus size: 23
69525 ATTTCACTCG
**
69535 AAAAGAAGTAAAAGAAAAAAG--
1 AAAAGAAAAAAAAGAAAAAAGAA
* *
69556 AAAAGACAAAAAAGTAAAAAGAA
1 AAAAGAAAAAAAAGAAAAAAGAA
*
69579 GAAAGAAGAGAAAAAGAAAAAAGAA
1 AAAAGAA-A-AAAAAGAAAAAAGAA
**
69604 AAAAGAAAAAAAAAGGGAAAAGAA
1 AAAAG-AAAAAAAAGAAAAAAGAA
*
69628 AATAGAAAAA
1 AAAAGAAAAA
69638 TGGGAAATAG
Statistics
Matches: 66, Mismatches: 11, Indels: 8
0.78 0.13 0.09
Matches are distributed among these distances:
21 17 0.26
23 10 0.15
24 18 0.27
25 19 0.29
26 2 0.03
ACGTcount: A:0.78, C:0.01, G:0.18, T:0.03
Consensus pattern (23 bp):
AAAAGAAAAAAAAGAAAAAAGAA
Found at i:70745 original size:99 final size:99
Alignment explanation
Indices: 70564--70747 Score: 242
Period size: 99 Copynumber: 1.9 Consensus size: 99
70554 AGGTTTGACA
* * * * * *
70564 GGGAAGGGTTGAGGTCGCAACGGCGAATCCGGTTCCATAGAGATGCAATGGGAAAGGTTGTGGTC
1 GGGAAGGATTGAGGTCGCAACAGCAAATCCGGTTCCATAGAGATGCAATGAGAAAGGTTGAGGCC
** ** *
70629 GTAACGATGAACTCGGTACCTTAAAAGATATTAT
66 ACAACGACAAACCCGGTACCTTAAAAGATATTAT
* *
70663 GGGAAGGATTGAGGTCGTAACAGCAAATCTGGTTCCATAGAGATGCAATGAGAAAGGTTGAGGCC
1 GGGAAGGATTGAGGTCGCAACAGCAAATCCGGTTCCATAGAGATGCAATGAGAAAGGTTGAGGCC
*
70728 ACAACGGCAAACCCGGTACC
66 ACAACGACAAACCCGGTACC
70748 ATGAAGATTT
Statistics
Matches: 71, Mismatches: 14, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
99 71 1.00
ACGTcount: A:0.31, C:0.17, G:0.32, T:0.20
Consensus pattern (99 bp):
GGGAAGGATTGAGGTCGCAACAGCAAATCCGGTTCCATAGAGATGCAATGAGAAAGGTTGAGGCC
ACAACGACAAACCCGGTACCTTAAAAGATATTAT
Found at i:71688 original size:49 final size:48
Alignment explanation
Indices: 71570--71690 Score: 163
Period size: 49 Copynumber: 2.5 Consensus size: 48
71560 AAATCCGCCA
* * * *
71570 TCCTAATGACATACAGAGAAATGGATTAAAACAAGTGAGATGGTCATCT
1 TCCTGATGAGATACAGAGAAGTAGATTAAAACAAGTGAGA-GGTCATCT
71619 TCCTGATGAGATACAGAGAAGTAGATTAAAACAAGTGATGCA-GTCATCT
1 TCCTGATGAGATACAGAGAAGTAGATTAAAACAAGTGA-G-AGGTCATCT
*
71668 TCCTGATGAGATACAAAGAAGTA
1 TCCTGATGAGATACAGAGAAGTA
71691 TAACAAATCA
Statistics
Matches: 65, Mismatches: 5, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
49 63 0.97
50 1 0.02
51 1 0.02
ACGTcount: A:0.40, C:0.14, G:0.21, T:0.24
Consensus pattern (48 bp):
TCCTGATGAGATACAGAGAAGTAGATTAAAACAAGTGAGAGGTCATCT
Found at i:71915 original size:171 final size:170
Alignment explanation
Indices: 71609--71985 Score: 594
Period size: 171 Copynumber: 2.2 Consensus size: 170
71599 AACAAGTGAG
* * *
71609 ATGGTCATCTTCCTGATGAGATACAGAGAAGTAGATTAAAACAAGTGATGCAGTCATCTTCCTGA
1 ATGGTCGTCTTCCTGATGAGATACAGAGAAGTGGATTAAAACAAGTGAGGCAGTCATCTTCCTGA
* ** *
71674 TGAGATACAAAGAAGTATAACAAATCAATGAAACAAAGCTCAATGTGAGTGAAACTTCGAACCTA
66 T-AGATACAAAGAAGTATAACAAATCAATGAAACAAAGCTCAATATGAGCAAAACTTCGAACCCA
71739 GCTTCCTGATGAGATACTGAGAAGCAGGTCAAAGCAATAAA
130 GCTTCCTGATGAGATACTGAGAAGCAGGTCAAAGCAATAAA
71780 ATGGTCGTCTTCCTGATGAGATACAGAGAAGTGGATTAAAACAAGTGAGGCAGTCATCTTCCTGA
1 ATGGTCGTCTTCCTGATGAGATACAGAGAAGTGGATTAAAACAAGTGAGGCAGTCATCTTCCTGA
** * * *
71845 T-GATACTGAGAAAGTATACCAAATCAATGAAACAAAGCTTAATATGAGCAAAACTTCGAGCCCC
66 TAGATACAAAG-AAGTATAACAAATCAATGAAACAAAGCTCAATATGAGCAAAACTTCGA-ACCC
*
71909 AGCTTCCTGATGAGATACTGAGAAGCAGGTCGAAGCAATAAA
129 AGCTTCCTGATGAGATACTGAGAAGCAGGTCAAAGCAATAAA
*
71951 ATGGTCGTCTTCCTGATGAGAAACAGAGAAGTGGA
1 ATGGTCGTCTTCCTGATGAGATACAGAGAAGTGGA
71986 CGAAATCCGT
Statistics
Matches: 190, Mismatches: 14, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
169 7 0.04
170 43 0.23
171 140 0.74
ACGTcount: A:0.38, C:0.17, G:0.22, T:0.23
Consensus pattern (170 bp):
ATGGTCGTCTTCCTGATGAGATACAGAGAAGTGGATTAAAACAAGTGAGGCAGTCATCTTCCTGA
TAGATACAAAGAAGTATAACAAATCAATGAAACAAAGCTCAATATGAGCAAAACTTCGAACCCAG
CTTCCTGATGAGATACTGAGAAGCAGGTCAAAGCAATAAA
Found at i:72144 original size:209 final size:208
Alignment explanation
Indices: 71785--72165 Score: 602
Period size: 209 Copynumber: 1.8 Consensus size: 208
71775 ATAAAATGGT
* * *
71785 CGTCTTCCTGATGAGATACAGAGAAGTGGATTAAAACAAGTGAGGCAGTCATCTTCCTGATGATA
1 CGTCTTCCTGATGAGATACAGAGAAGTAGATTAAAACAAATGAGGCAGTCATCTTCCTGATGAGA
* * *
71850 CTGAGAAAGTATACCAAATCAATGAAACAAAGCTTAATATGAGCAAAACTTCGAGCCCCAGCTTC
66 CTGAGAAAGTATACCAAATCAATGAAACAAAGCTCAATATGAGCAAAACTTCGAACCCCAACTTC
*
71915 CTGATGAGATACTGAGAAGCAGGTCGAAGCAATAAAATGGTCGTCTTCCTGATGAGAAACAGAGA
131 CTGATGAGATACTGAGAAGCAGGTCAAAGCAATAAAATGGTCGTCTTCCTGATGAGAAACAGAGA
71980 AGTGGACGAAATC
196 AGTGGACGAAATC
** *
71993 CGTCTTCCTGATGAGATACAGAGAAGTAGATTAAAACAAATGTTGCAGTCATCTTCTTGATGAGA
1 CGTCTTCCTGATGAGATACAGAGAAGTAGATTAAAACAAATGAGGCAGTCATCTTCCTGATGAGA
* *
72058 -TAGAGAGAAGTATACCAAATCAATGAAACAAGGCTCAATATGAGCGAAACTTCGAACCCCAACT
66 CT-GAGA-AAGTATACCAAATCAATGAAACAAAGCTCAATATGAGCAAAACTTCGAACCCCAACT
* * *
72122 TCCTGATGAGGTACTGAGAAGCAGGTTAAAGCAATAAAGTGGTC
129 TCCTGATGAGATACTGAGAAGCAGGTCAAAGCAATAAAATGGTC
72166 ACCTTCCTAA
Statistics
Matches: 156, Mismatches: 15, Indels: 3
0.90 0.09 0.02
Matches are distributed among these distances:
207 1 0.01
208 63 0.40
209 92 0.59
ACGTcount: A:0.37, C:0.18, G:0.23, T:0.22
Consensus pattern (208 bp):
CGTCTTCCTGATGAGATACAGAGAAGTAGATTAAAACAAATGAGGCAGTCATCTTCCTGATGAGA
CTGAGAAAGTATACCAAATCAATGAAACAAAGCTCAATATGAGCAAAACTTCGAACCCCAACTTC
CTGATGAGATACTGAGAAGCAGGTCAAAGCAATAAAATGGTCGTCTTCCTGATGAGAAACAGAGA
AGTGGACGAAATC
Found at i:74559 original size:7 final size:7
Alignment explanation
Indices: 74538--74642 Score: 79
Period size: 7 Copynumber: 14.7 Consensus size: 7
74528 GATTTCACTC
74538 GAAAATAA
1 GAAAA-AA
74546 G-AAAAA
1 GAAAAAA
74552 GAAAAAA
1 GAAAAAA
*
74559 GAAAAGA
1 GAAAAAA
*
74566 CAAAAAA
1 GAAAAAA
74573 GAAAAAA
1 GAAAAAA
74580 -AAAGAAA
1 GAAA-AAA
*
74587 GAGAAAA
1 GAAAAAA
*
74594 GAACAAA
1 GAAAAAA
74601 GAAAAAAA
1 G-AAAAAA
**
74609 GGGAAAA
1 GAAAAAA
*
74616 GAAAATA
1 GAAAAAA
*
74623 GAAAAATG
1 GAAAAA-A
*
74631 GGAAAAA
1 GAAAAAA
74638 GAAAA
1 GAAAA
74643 GGAGAGGTCG
Statistics
Matches: 74, Mismatches: 18, Indels: 11
0.72 0.17 0.11
Matches are distributed among these distances:
6 6 0.08
7 54 0.73
8 14 0.19
ACGTcount: A:0.76, C:0.02, G:0.19, T:0.03
Consensus pattern (7 bp):
GAAAAAA
Found at i:74592 original size:37 final size:36
Alignment explanation
Indices: 74539--74628 Score: 92
Period size: 37 Copynumber: 2.4 Consensus size: 36
74529 ATTTCACTCG
*
74539 AAAATAAGAAAAAGAAAA-AAGAAAAGACAAAAAAGAA
1 AAAAAAAGAAAAAGAAAAGAA-AAAAGA-AAAAAAGAA
* *
74576 AAAAAAAGAAAGAGAAAAGAACAAAGAAAAAAAGGGAA
1 AAAAAAAGAAAAAGAAAAGAAAAAAGAAAAAAA--GAA
74614 AAGAAAATAGAAAAA
1 AA-AAAA-AGAAAAA
74629 TGGGAAAAAG
Statistics
Matches: 44, Mismatches: 4, Indels: 7
0.80 0.07 0.13
Matches are distributed among these distances:
36 6 0.14
37 21 0.48
38 7 0.16
39 4 0.09
40 6 0.14
ACGTcount: A:0.79, C:0.02, G:0.17, T:0.02
Consensus pattern (36 bp):
AAAAAAAGAAAAAGAAAAGAAAAAAGAAAAAAAGAA
Found at i:74593 original size:22 final size:21
Alignment explanation
Indices: 74545--74642 Score: 76
Period size: 22 Copynumber: 4.6 Consensus size: 21
74535 CTCGAAAATA
*
74545 AGAAAAAG-AAAAAAGAAAAG
1 AGAAAAAGAAAAAAAAAAAAG
*
74565 ACAAAAAAGAAAAAAAAAGAAAG
1 A-GAAAAAGAAAAAAAAA-AAAG
74588 AG-AAAAGAACAAAGAAAAAAAG
1 AGAAAAAGAA-AAA-AAAAAAAG
* * *
74610 -GGAAAAGAAAATAGAAAAATG
1 AGAAAAAGAAAA-AAAAAAAAG
*
74631 GGAAAAAGAAAA
1 AGAAAAAGAAAA
74643 GGAGAGGTCG
Statistics
Matches: 64, Mismatches: 6, Indels: 14
0.76 0.07 0.17
Matches are distributed among these distances:
20 1 0.02
21 22 0.34
22 32 0.50
23 9 0.14
ACGTcount: A:0.77, C:0.02, G:0.19, T:0.02
Consensus pattern (21 bp):
AGAAAAAGAAAAAAAAAAAAG
Found at i:75682 original size:49 final size:48
Alignment explanation
Indices: 75600--75811 Score: 153
Period size: 49 Copynumber: 4.3 Consensus size: 48
75590 AGATGCAATG
** * * *
75600 GGAAAGGTTGAGATCGTAACGACGAATTTGGTACCATGAAGATTTGAAA
1 GGAAAGGTTGAGGCCGTAACGGCGAACTCGGTACCATGAAGATTT-AAA
* * * *
75649 GGAAAGGTTGAGGCCGCAACGGTGAACTCGGTACTC-TAAAAGATATT-AT
1 GGAAAGGTTGAGGCCGTAACGGCGAACTCGGTAC-CAT-GAAGAT-TTAAA
* * * * * ** *
75698 GGGAAGGATTGAGTCCATAACGGCGAA-TCCGGTTCCAT-AGGGATGCAATG
1 GGAAAGG-TTGAGGCCGTAACGGCGAACT-CGGTACCATGA-AGATTTAA-A
*
75748 GGAAAGGTTGAGGCCGTAACGGCGAACTTGGTACCATGAAGATTTAAA
1 GGAAAGGTTGAGGCCGTAACGGCGAACTCGGTACCATGAAGATTTAAA
75796 GGGAAAGGTTGAGGCC
1 -GGAAAGGTTGAGGCC
75812 TTAAAAGATT
Statistics
Matches: 123, Mismatches: 28, Indels: 24
0.70 0.16 0.14
Matches are distributed among these distances:
48 1 0.01
49 85 0.69
50 35 0.28
51 2 0.02
ACGTcount: A:0.32, C:0.15, G:0.32, T:0.21
Consensus pattern (48 bp):
GGAAAGGTTGAGGCCGTAACGGCGAACTCGGTACCATGAAGATTTAAA
Found at i:76626 original size:37 final size:37
Alignment explanation
Indices: 76585--76731 Score: 109
Period size: 37 Copynumber: 3.6 Consensus size: 37
76575 AAATCGTCAG
76585 CTTCCTGATGAGATACAGAGAAGTGGACCAAATTTGT
1 CTTCCTGATGAGATACAGAGAAGTGGACCAAATTTGT
* *
76622 CTTCCTGATGAGATATAGAGAAAAG-GGTA-AAAATAAGTGAGTCGGTCAT
1 CTTCCTGATGAGATACAGAG--AAGTGG-ACCAAAT---T---T--G---T
* *
76671 CTTCCTGATGAGATATAGAGAAGTGGACCAAATTCGT
1 CTTCCTGATGAGATACAGAGAAGTGGACCAAATTTGT
*
76708 CTTCCTAATGAGATACAGAGAAGT
1 CTTCCTGATGAGATACAGAGAAGT
76732 TAATTAAAAC
Statistics
Matches: 88, Mismatches: 6, Indels: 32
0.70 0.05 0.25
Matches are distributed among these distances:
37 42 0.48
38 6 0.07
39 4 0.05
40 1 0.01
41 1 0.01
44 1 0.01
45 1 0.01
46 1 0.01
47 4 0.05
48 6 0.07
49 21 0.24
ACGTcount: A:0.35, C:0.14, G:0.24, T:0.26
Consensus pattern (37 bp):
CTTCCTGATGAGATACAGAGAAGTGGACCAAATTTGT
Found at i:76746 original size:86 final size:86
Alignment explanation
Indices: 76580--76789 Score: 260
Period size: 86 Copynumber: 2.4 Consensus size: 86
76570 CAATAAAATC
* * * *
76580 GTCAGCTTCCTGATGAGATACAGAGAAGTGGACCAAATTTGTCTTCCTGATGAGATATAGAGAAA
1 GTCATCTTCCTGATGAGATACAGAGAAGTGGACCAAATTCGTCTTCCTAATGAGATACAGAGAAA
** *
76645 AGGGTAAAAATAAGTGA-GTCG
66 AGAATAAAAACAAGTGATG-CG
* *
76666 GTCATCTTCCTGATGAGATATAGAGAAGTGGACCAAATTCGTCTTCCTAATGAGATACAGAGAAG
1 GTCATCTTCCTGATGAGATACAGAGAAGTGGACCAAATTCGTCTTCCTAATGAGATACAGAGAAA
** *
76731 TTAATTAAAACAAGTGATGCG
66 AGAATAAAAACAAGTGATGCG
* * **
76752 GTCATCTTCCTGATAAGATACAAAGAAGTATACCAAAT
1 GTCATCTTCCTGATGAGATACAGAGAAGTGGACCAAAT
76790 CAATGAAACA
Statistics
Matches: 106, Mismatches: 17, Indels: 2
0.85 0.14 0.02
Matches are distributed among these distances:
86 105 0.99
87 1 0.01
ACGTcount: A:0.37, C:0.15, G:0.22, T:0.26
Consensus pattern (86 bp):
GTCATCTTCCTGATGAGATACAGAGAAGTGGACCAAATTCGTCTTCCTAATGAGATACAGAGAAA
AGAATAAAAACAAGTGATGCG
Found at i:76900 original size:294 final size:295
Alignment explanation
Indices: 76369--76997 Score: 829
Period size: 294 Copynumber: 2.1 Consensus size: 295
76359 AAACAATAAA
* * * * *
76369 GTGGTCATCTTCCTGACGAGATGCAGAGAAGCAAACCAAA-TCTATCTTCCTGATGAGATTCAGA
1 GTGGTCATCTTCCTGATGAGATACAGAGAAGTAAACCAAATTCTATCTTCCTAATGAGATACAGA
* * * *
76433 GAAATGGATTAAAACAATGAGGTGGTCATCTTCCTGATGAGATACAAAGAAGTATATCAAATCAA
66 GAAATGAATTAAAACAATGAGGCGGTCATCTTCCTGATAAGATACAAAGAAGTATACCAAATCAA
* * ** * * * * *
76498 TGGAATAAGGCTCTATATGAGCGAAACTTCGAACCCTAGCTTCTTGATGAGATATTGAGAAGCAA
131 TGAAACAAAACTCAATATGAGCGAAACTTCGAACCCTAGCTTCCTAATGAGATACTGAGAAACAA
* * ***
76563 GTCGTAGCAATAAAATCGTCAGCTTCCTGATGAGATACAGAGAAGTGGACCAAATTTGTCTTCCT
196 GTCGAAGCAATAAAATAGTCAGCTTCCTGATGAGATACAGAGAAGTGGACCAAATCCATCTTCCT
76628 GATGAGATATAGAGAAAAGG-GTAAAAATAAGTGA-
261 GATGAGATATAGAGAAAAGGAGTAAAAA-AAGTGAG
* ** *
76662 GTCGGTCATCTTCCTGATGAGATATAGAGAAGTGGACCAAATTC-GTCTTCCTAATGAGATACAG
1 GT-GGTCATCTTCCTGATGAGATACAGAGAAGTAAACCAAATTCTATCTTCCTAATGAGATACAG
* * *
76726 AGAAGTTAATTAAAACAAGTGATGCGGTCATCTTCCTGATAAGATACAAAGAAGTATACCAAATC
65 AGAAATGAATTAAAACAA-TGAGGCGGTCATCTTCCTGATAAGATACAAAGAAGTATACCAAATC
*
76791 AATGAAACAAAACTCAATGTGAGCGAAACTTCGAA-CCTAGCTTCCTAATGAGATACTGAGAAAC
129 AATGAAACAAAACTCAATATGAGCGAAACTTCGAACCCTAGCTTCCTAATGAGATACTGAGAAAC
*
76855 AGGTCGAAGCAATAAAATAGTC-GTCTTCCTGATGAGATACAGAGAAGTGGACCAAATCCATCTT
194 AAGTCGAAGCAATAAAATAGTCAG-CTTCCTGATGAGATACAGAGAAGTGGACCAAATCCATCTT
** *
76919 CCTGATGAGATATAGAGAAGTGGATTAAAAAAAGTGAG
258 CCTGATGAGATATAGAGAAAAGGAGTAAAAAAAGTGAG
* * * *
76957 GTGATCATCATCCTGATGAGGTACAGAGAAGTATACCAAAT
1 GTGGTCATCTTCCTGATGAGATACAGAGAAGTAAACCAAAT
76998 CAATGAAACA
Statistics
Matches: 289, Mismatches: 41, Indels: 11
0.85 0.12 0.03
Matches are distributed among these distances:
293 3 0.01
294 205 0.71
295 81 0.28
ACGTcount: A:0.38, C:0.16, G:0.22, T:0.24
Consensus pattern (295 bp):
GTGGTCATCTTCCTGATGAGATACAGAGAAGTAAACCAAATTCTATCTTCCTAATGAGATACAGA
GAAATGAATTAAAACAATGAGGCGGTCATCTTCCTGATAAGATACAAAGAAGTATACCAAATCAA
TGAAACAAAACTCAATATGAGCGAAACTTCGAACCCTAGCTTCCTAATGAGATACTGAGAAACAA
GTCGAAGCAATAAAATAGTCAGCTTCCTGATGAGATACAGAGAAGTGGACCAAATCCATCTTCCT
GATGAGATATAGAGAAAAGGAGTAAAAAAAGTGAG
Found at i:77028 original size:208 final size:209
Alignment explanation
Indices: 76670--77079 Score: 597
Period size: 208 Copynumber: 2.0 Consensus size: 209
76660 GAGTCGGTCA
* * * *
76670 TCTTCCTGATGAGATATAGAGAAGTGGACCAAATTCGTCTTCCTAATGAGATACAGAGAAGTTAA
1 TCTTCCTGATGAGATACAGAGAAGTGGACCAAATCCATCTTCCTAATGAGATACAGAGAAGTGAA
* * * *
76735 TTAAAACAAGTGATGCGGTCATCTTCCTGATAAGATACAAAGAAGTATACCAAATCAATGAAACA
66 TTAAAAAAAGTGAGGCGATCATCATCCTGATAAGATACAAAGAAGTATACCAAATCAATGAAACA
* * *
76800 AAACTCAATGTGAGCGAAACTTCGAA-CCTAGCTTCCTAATGAGATACTGAGAAACAGGTCGAAG
131 AAACTCAATATGAGCGAAACTTCGAACCCCAGCTTCCTAATGAGATACTGAGAAACAGGTCAAAG
76864 CAATAAAATAGTCG
196 CAATAAAATAGTCG
* * *
76878 TCTTCCTGATGAGATACAGAGAAGTGGACCAAATCCATCTTCCTGATGAGATATAGAGAAGTGGA
1 TCTTCCTGATGAGATACAGAGAAGTGGACCAAATCCATCTTCCTAATGAGATACAGAGAAGTGAA
* * * *
76943 TTAAAAAAAGTGAGGTGATCATCATCCTGATGAGGTACAGAGAAGTATACCAAATCAATGAAACA
66 TTAAAAAAAGTGAGGCGATCATCATCCTGATAAGATACAAAGAAGTATACCAAATCAATGAAACA
* * * * * *
77008 AAGCTCAATATGAGCGAAACTTCGAACCCCAGCTTCCTGATGAGGTATTGATAAATAGGTCAAAG
131 AAACTCAATATGAGCGAAACTTCGAACCCCAGCTTCCTAATGAGATACTGAGAAACAGGTCAAAG
77073 CAATAAA
196 CAATAAA
77080 GTGGTCACTT
Statistics
Matches: 177, Mismatches: 24, Indels: 1
0.88 0.12 0.00
Matches are distributed among these distances:
208 139 0.79
209 38 0.21
ACGTcount: A:0.40, C:0.17, G:0.20, T:0.23
Consensus pattern (209 bp):
TCTTCCTGATGAGATACAGAGAAGTGGACCAAATCCATCTTCCTAATGAGATACAGAGAAGTGAA
TTAAAAAAAGTGAGGCGATCATCATCCTGATAAGATACAAAGAAGTATACCAAATCAATGAAACA
AAACTCAATATGAGCGAAACTTCGAACCCCAGCTTCCTAATGAGATACTGAGAAACAGGTCAAAG
CAATAAAATAGTCG
Found at i:77529 original size:17 final size:17
Alignment explanation
Indices: 77509--77594 Score: 100
Period size: 17 Copynumber: 5.1 Consensus size: 17
77499 ATCTAGCCCA
*
77509 ATTTTAAATTTTAATTT
1 ATTTTAAATTTAAATTT
*
77526 ATTTTAAGTTTAAATTT
1 ATTTTAAATTTAAATTT
* *
77543 ATTATAAATTTTAATTT
1 ATTTTAAATTTAAATTT
* * *
77560 ATTTTTAGTTTAAACTT
1 ATTTTAAATTTAAATTT
*
77577 ATTTTAAATTTGAATTT
1 ATTTTAAATTTAAATTT
77594 A
1 A
77595 ATTAAAAATG
Statistics
Matches: 55, Mismatches: 14, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
17 55 1.00
ACGTcount: A:0.36, C:0.01, G:0.03, T:0.59
Consensus pattern (17 bp):
ATTTTAAATTTAAATTT
Found at i:77551 original size:34 final size:34
Alignment explanation
Indices: 77513--77594 Score: 128
Period size: 34 Copynumber: 2.4 Consensus size: 34
77503 AGCCCAATTT
*
77513 TAAATTTTAATTTATTTTAAGTTTAAATTTATTA
1 TAAATTTTAATTTATTTTAAGTTTAAACTTATTA
* *
77547 TAAATTTTAATTTATTTTTAGTTTAAACTTATTT
1 TAAATTTTAATTTATTTTAAGTTTAAACTTATTA
*
77581 TAAATTTGAATTTA
1 TAAATTTTAATTTA
77595 ATTAAAAATG
Statistics
Matches: 44, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
34 44 1.00
ACGTcount: A:0.37, C:0.01, G:0.04, T:0.59
Consensus pattern (34 bp):
TAAATTTTAATTTATTTTAAGTTTAAACTTATTA
Found at i:84195 original size:194 final size:194
Alignment explanation
Indices: 83861--84250 Score: 584
Period size: 194 Copynumber: 2.0 Consensus size: 194
83851 AGCCTTTCCT
* * *
83861 TCAATGGATCAAGGCTCAGGAATGCTACAACAGAGACCATATACCATATATTCATTGGGTACATG
1 TCAAAGGATCAAGGCTCAAGAATGCTACAACAGAGACCATATACCATATATTCATTGGCTACATG
* * *
83926 AACATGATCATGTTTGCCTTGAGGACTCTCAAGATTAACATTTAAAACAAACGTAGAAAATATAA
66 AACATGATCATGTTTGCCCTGAGGACTCCCAAGATTAACATTCAAAACAAACGTAGAAAATATAA
* * * *
83991 CAATAAAAATAGAATTTAATATCGTGGACTTTGAGGTTTAAAACTATTACTGACTAAGGCCATA
131 CAATAAAAATAAAATTTAATATCGTGGACTATGAGGTTCAAAACAATTACTGACTAAGGCCATA
* * **
84055 TCAAAGGATCAAGGCTCAAGAATGCTACAATAGAGACCATATACCATATGTTTGTTGGCTACATG
1 TCAAAGGATCAAGGCTCAAGAATGCTACAACAGAGACCATATACCATATATTCATTGGCTACATG
* * * *
84120 AACATGTTCATGTTTGCCCTGAGGACTCCCGAGATTAAC-TTGCCAAACAAATGTAGAAAATATA
66 AACATGATCATGTTTGCCCTGAGGACTCCCAAGATTAACATT-CAAAACAAACGTAGAAAATATA
* *
84184 ACAGTAAAAATAAAATTTAATATCGTGGACTATGAGGTTCAAAACAATTATTGACTAAGGCCATA
130 ACAATAAAAATAAAATTTAATATCGTGGACTATGAGGTTCAAAACAATTACTGACTAAGGCCATA
84249 TC
1 TC
84251 TAGGAGGAAA
Statistics
Matches: 175, Mismatches: 20, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
193 2 0.01
194 173 0.99
ACGTcount: A:0.39, C:0.17, G:0.17, T:0.27
Consensus pattern (194 bp):
TCAAAGGATCAAGGCTCAAGAATGCTACAACAGAGACCATATACCATATATTCATTGGCTACATG
AACATGATCATGTTTGCCCTGAGGACTCCCAAGATTAACATTCAAAACAAACGTAGAAAATATAA
CAATAAAAATAAAATTTAATATCGTGGACTATGAGGTTCAAAACAATTACTGACTAAGGCCATA
Found at i:84614 original size:289 final size:289
Alignment explanation
Indices: 84076--84630 Score: 853
Period size: 289 Copynumber: 1.9 Consensus size: 289
84066 AGGCTCAAGA
* * *
84076 ATGCTACAATAGAGACCATATACCATATGTTTGTTGGCTACATGAACATGTTCATGTTTGCCCTG
1 ATGCTACAATAGAGACCATATACCATATGTTTGTTGGCTACATGAACATGTTCATGTCTACCCTC
*** *
84141 AGGACTCCCGAGATTAACTTGCCAAACAAATGTAGAAAATATAACAGTAAAAATAAAATTTAATA
66 AGGACTCCCGAGATTAACTTGCCAAACAAACACAGAAAATATAACAGTAAAAATAAAATTTAACA
* *
84206 TCGTGGACTATGAGGTTCAAAACAATTATTGACTAAGGCCATATCTAGGAGGAAAGGCATAAGGG
131 TCGTGGACTATGAGGTACAAAACAATTACTGACTAAGGCCATATCTAGGAGGAAAGGCATAAGGG
* *
84271 ACATAATTATCCATTAGAGCATGCATTGAGGAAGTATTTGTTATCTTATTGTCCCTCAAGATAGA
196 ACATAATTATCCATTAGAGAATGCATTGAGGAAGTATTTGTCATCTTATTGTCCCTCAAGATAGA
84336 GAGCAATACCGCAAATATTTCCTCAATGC
261 GAGCAATACCGCAAATATTTCCTCAATGC
* * *
84365 ATGCTACAATAGAGACCATATACCATATGTTTGTTGGTTGCATGAACATGTTCATGTCTACCTTC
1 ATGCTACAATAGAGACCATATACCATATGTTTGTTGGCTACATGAACATGTTCATGTCTACCCTC
*
84430 AGGACTCCC-AGGATTGACTTGCCAAACAAACACAGAAAATATAACAGTAAAAATAAAATTTAAC
66 AGGACTCCCGA-GATTAACTTGCCAAACAAACACAGAAAATATAACAGTAAAAATAAAATTTAAC
* * * *
84494 ATCTTGGACTTTGAGGTACAAAACTATTGCTGACTAAGGCCATATCTAGGAGGAAAGGCATAAGG
130 ATCGTGGACTATGAGGTACAAAACAATTACTGACTAAGGCCATATCTAGGAGGAAAGGCATAAGG
* * * ***
84559 GACATAATTATCCATTGGAGAATGCATTGAGGAAGTGTTTG-CAGTCTTCTTGTCCCTTGGGATA
195 GACATAATTATCCATTAGAGAATGCATTGAGGAAGTATTTGTCA-TCTTATTGTCCCTCAAGATA
84623 GAGAGCAA
259 GAGAGCAA
84631 GATGATAAAA
Statistics
Matches: 239, Mismatches: 25, Indels: 4
0.89 0.09 0.01
Matches are distributed among these distances:
288 2 0.01
289 237 0.99
ACGTcount: A:0.35, C:0.17, G:0.19, T:0.28
Consensus pattern (289 bp):
ATGCTACAATAGAGACCATATACCATATGTTTGTTGGCTACATGAACATGTTCATGTCTACCCTC
AGGACTCCCGAGATTAACTTGCCAAACAAACACAGAAAATATAACAGTAAAAATAAAATTTAACA
TCGTGGACTATGAGGTACAAAACAATTACTGACTAAGGCCATATCTAGGAGGAAAGGCATAAGGG
ACATAATTATCCATTAGAGAATGCATTGAGGAAGTATTTGTCATCTTATTGTCCCTCAAGATAGA
GAGCAATACCGCAAATATTTCCTCAATGC
Done.