genome.fa.s13545.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01013545.1 Kokia drynarioides strain JFW-HI SEQ_128571, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  227783

Tables:   1   

This is table  1  of  1  ( 84 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10563--10903	158	2.2	158	90	1	540	36	21	20	22	1.96
11366--11434	6	11.8	6	76	17	74	43	1	1	53	1.18
11359--11433	17	4.4	17	84	3	105	42	1	1	54	1.17
11356--11434	11	6.9	11	74	16	63	41	1	1	55	1.16
12136--12214	3	26.3	3	73	10	63	58	5	1	35	1.28
12139--12223	27	3.1	27	75	6	82	55	5	3	35	1.41
13228--13482	59	4.4	57	80	12	234	33	28	5	32	1.80
13223--13482	89	3.0	89	82	8	279	32	28	5	32	1.81
13223--13483	30	8.9	30	80	10	240	32	28	5	32	1.81
13754--13936	96	1.9	97	82	7	230	28	18	15	37	1.91
17656--17680	11	2.3	11	100	0	50	28	24	20	28	1.99
20875--20911	19	1.9	19	88	0	56	21	8	27	43	1.80
23342--23420	39	2.0	40	90	4	126	30	22	16	30	1.96
23352--23436	38	2.2	38	85	6	109	30	20	16	32	1.94
29449--29487	20	1.9	21	84	5	53	17	0	7	74	1.05
29726--29783	22	2.6	22	79	12	57	13	6	5	74	1.20
40738--40772	14	2.6	13	86	4	52	45	0	0	54	0.99
43067--43133	31	2.2	31	97	0	125	55	2	13	28	1.53
43238--43363	32	4.1	31	76	8	107	72	17	4	5	1.22
43254--43314	24	2.6	24	84	7	72	72	19	3	4	1.18
43254--43329	24	3.4	23	77	13	70	71	21	3	3	1.19
43322--43359	18	2.1	18	90	0	58	73	15	5	5	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43335--43394	22	2.8	21	76	14	59	73	20	1	5	1.11
44700--44757	30	1.9	30	82	6	73	39	13	8	37	1.76
45811--45867	24	2.4	24	84	0	69	29	3	19	47	1.66
46259--46287	2	14.5	2	100	0	58	51	0	0	48	1.00
49695--49729	14	2.5	14	95	0	61	5	17	25	51	1.67
52401--52447	14	3.4	14	70	5	51	36	2	2	59	1.21
56096--56129	9	3.8	9	92	7	52	0	8	0	91	0.43
56093--56129	20	1.9	18	89	10	56	0	10	0	89	0.49
56095--56126	14	2.4	14	94	5	57	0	9	0	90	0.45
56235--56334	33	3.1	32	72	14	89	43	11	8	38	1.70
56441--56465	2	12.5	2	100	0	50	48	0	0	52	1.00
57061--57099	17	2.3	17	90	0	60	56	10	5	28	1.54
64598--64625	14	2.0	14	100	0	56	35	7	14	42	1.73
68221--68277	26	2.4	22	76	21	60	31	1	3	63	1.22
76978--77011	6	5.7	6	100	0	68	0	29	0	70	0.87
86910--86941	2	16.0	2	93	0	55	46	0	3	50	1.17
90710--90772	26	2.5	25	79	5	65	36	7	22	33	1.83
91007--91060	20	2.7	21	83	13	69	42	0	5	51	1.25
91007--91063	11	5.5	11	77	12	50	42	0	5	52	1.24
92701--92734	17	1.9	18	88	5	52	64	8	5	20	1.43
94976--95027	18	2.6	21	76	14	56	19	11	3	65	1.40
112599--112643	13	3.7	13	80	14	60	80	11	8	0	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
117066--117155	33	2.7	33	91	1	144	55	4	30	10	1.52
118029--118153	23	5.3	24	83	7	134	12	23	20	44	1.85
118029--118153	46	2.7	47	85	6	164	12	23	20	44	1.85
118052--118201	69	2.1	69	84	11	191	13	22	19	44	1.85
118052--118198	23	6.3	23	79	10	140	13	23	19	43	1.86
119459--119511	22	2.4	22	93	6	90	26	3	9	60	1.45
122191--122229	6	6.5	6	93	0	69	30	35	2	30	1.71
123580--123651	22	3.4	22	62	14	60	19	22	27	30	1.98
123580--123663	42	2.0	42	97	0	159	22	21	27	28	1.99
133226--133266	17	2.5	16	84	4	55	39	0	2	58	1.11
137261--137341	40	2.0	40	100	0	162	7	27	18	46	1.75
139692--139735	13	3.2	13	87	9	61	40	4	0	54	1.21
141747--141814	20	3.4	20	97	0	127	41	8	19	30	1.82
142356--142415	26	2.3	27	82	8	70	46	1	3	48	1.28
159510--159569	31	1.9	31	87	12	88	60	1	3	35	1.23
160219--160248	7	4.3	7	95	0	51	0	60	16	23	1.36
164634--164665	6	5.3	6	100	0	64	18	15	34	31	1.93
168594--168628	17	2.1	17	94	5	63	60	14	0	25	1.35
172691--172748	21	2.8	21	82	10	73	29	13	27	29	1.94
175017--175058	21	2.0	21	95	0	75	35	19	19	26	1.95
177540--177729	31	6.3	30	66	21	110	45	11	16	26	1.82
177540--177729	91	2.1	91	85	3	249	45	11	16	26	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
179250--179284	17	2.1	17	89	10	54	57	0	0	42	0.99
181886--181946	17	3.4	17	69	20	52	26	1	18	54	1.53
183714--183759	3	15.3	3	86	8	67	69	2	0	28	1.00
183735--183837	39	2.6	38	89	6	109	62	2	7	27	1.37
183753--183818	19	3.4	19	70	25	66	60	3	9	27	1.42
190556--190616	24	2.6	24	84	7	81	24	8	21	45	1.78
195331--195405	23	3.3	23	74	10	73	25	22	16	36	1.94
204929--204958	14	2.1	14	93	0	51	43	0	0	56	0.99
208824--208848	4	6.2	4	100	0	50	76	24	0	0	0.80
208881--208910	2	15.0	2	92	0	51	53	0	46	0	1.00
214267--214404	69	2.0	69	98	0	267	23	28	15	31	1.95
220426--220494	25	2.7	26	76	10	72	71	5	2	20	1.20
222557--222598	22	2.0	21	90	4	66	14	4	9	71	1.28
226365--226401	16	2.2	17	90	9	58	43	0	0	56	0.99
226818--226860	14	2.7	16	79	20	54	51	0	0	48	1.00
226786--226847	25	2.5	25	86	2	81	48	0	0	51	1.00
226777--226871	40	2.2	43	87	9	133	48	0	1	50	1.07
226818--226867	16	3.3	14	78	15	55	54	0	0	46	1.00

Tables:   1

The End!