Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01013550.1 Kokia drynarioides strain JFW-HI SEQ_128576, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 2803
ACGTcount: A:0.40, C:0.15, G:0.17, T:0.28
Found at i:383 original size:216 final size:215
Alignment explanation
Indices: 28--2790 Score: 2630
Period size: 216 Copynumber: 12.8 Consensus size: 215
18 CCTTTAGTAG
* * * *
28 TTTAAGGAACCGAAGTTATAAAGGAACT-GATAAAAAGTTTGACAAGTT-TAGAAGTTCGTCTAA
1 TTTAAGGAACCAAAGTTATAAAAGAACTCG-T-AAAAGTTTGACAAGTTCGA-AAGTTCGTCCAA
* * *
91 GAACCAAGAGAGAAACAATTGTCATGTAAAT-A-TTTTTAATTCAAAGACGAAAAGTTGATTACA
63 GAACCAAGAGAGAAACAATTCTCATGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACA
* * * *
154 AAATGAAAAACTATTTAGACCAAATGATGCGATTTCCCAAGCGTATAATGTTCAGAAAATTGCTC
128 AAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATAGAATGTTC-GAAAATTGCTC
*
219 GAAGGAATGGATCGTCTTGAATAC
192 AAAGGAATGGATCGTCTTGAATAC
** * *
243 TTTAAGGAACTGAAGTTATAAAAGAACTCATAAAAGCTTGACAAGTTCGAAAGTTCAG-CCAAGA
1 TTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTC-GTCCAAGA
* * * * *
307 ACAAAGAGAGAAACAGTTCTGACGTAAATAAGTTTTTAATTCAAAGAGCAAAAGTTGTTTACAAA
65 ACCAAGAGAGAAACAATTCTCATGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAA
* * ** * * * *
372 ATGACAAACTATTTAAACCAAATAATGCGATTTTTCGAGCATTGAATGTTCGAAAAACTGGTCGA
130 ATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATAGAATGTTCG-AAAATTGCTCAA
* * *
437 A-GCATAGGATCGCCTTGAATAA
194 AGGAAT-GGATCGTCTTGAATAC
* * * * * *
459 TTTAAGGAACCGAAGTTATAAAAGAACTTGTAAAAGTTTGACAAGATCGGAAGTTCATCCAAAAA
1 TTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAA
* * *
524 CCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTCAATTCAAAGACCAAAAGTTGTTCACAAAA
66 CCAAGAGAGAAACAATTCTCATGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAA
* * * *** * * *
589 TTAAAAAAAC-ATTAAGAATGAATGATGCGATTTCCCGAGCCTGGAATGCTCGAAAAGTTAG-TC
131 -T-GACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATAGAATGTTCGAAAA-TT-GCTC
* * * *
652 AAAGGAATGGGTCATCTTTAATGC
192 AAAGGAATGGATCGTCTTGAATAC
* * * * *
676 TCTCAGAAACCGAAGTTATAAAAGAACTGGTAAATA-TTTGACAAGTTCTG-AAGTTCGTCCAAG
1 TTTAAGGAACCAAAGTTATAAAAGAACTCGTAAA-AGTTTGACAAGTTC-GAAAGTTCGTCCAAG
* *
739 AACCAAGAGAGAAACAATCCTCATGTAAATAAGTTTTTAATTCAAAGACCAATAGGTT-TTTACA
64 AACCAAGAGAGAAACAATTCTCATGTAAATAAGTTTTTAATTCAAAGACCAA-AAGTTGTTTACA
* * * * *
803 AAATGACAAACTATTTAGACCGAATGATGCGATTTCCTGAGCATGGAATGTTTGAAAAATTGCAC
128 AAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATAGAATGTTCG-AAAATTGCTC
*
868 AAAGGAATGGATCGTCTTTAATAC
192 AAAGGAATGGATCGTCTTGAATAC
* * ** * * **
892 TGTCAA-GAACCAAAGTTATAACAAAAGAACTTGTAAATTTTTGAAAAGTTTGAAAGTTAATCCA
1 T-TTAAGGAACCAAAGTTAT---AAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCA
* * * * * * *
956 AGAACCAAGAAACAAA-ATATTCTCATGCAAATAAATTTTAAATCCAAACACCAAAAGTTGTTTA
62 AGAACCAAGAGAGAAACA-ATTCTCATGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTA
* * * * * *
1020 CCATATGACAAACTATTTTGACCAAATGATGCAAATTT-TCGAGAAT-GAAATGTTCGAAAAGTT
126 CAAAATGACAAACTATTTAGACCAAATGATGC-GATTTCCCGAGCATAG-AATGTTCGAAAA-TT
* * * * * * *
1083 GGTTGAAA-TAATGCATCTTTTTAAATAC
188 -GCTCAAAGGAATGGATCGTCTTGAATAC
* * * ** * *
1111 TATT-CGGAACCAAAGTTATAAAAGCACTTGTAAATTTTTGA-AAGTTCGGAAGTTCATCCAAGA
1 T-TTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGA
*** *
1174 ACTGGGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAA
65 ACCAAGAGAGAAACAATTCTCATGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAA
* * *
1239 ATGACAAACTATTTAGACCAAATGATGCCATTTCTCGAGCA-AGGAATGTTCGGAAAATGGCTCA
130 ATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATA-GAATGTTC-GAAAATTGCTCA
* *
1303 AATGAATGGATAGTCTTGAATAC
193 AAGGAATGGATCGTCTTGAATAC
* * * *
1326 TTTAAGGAACCAAAGTTGTAAAAGAACTCGTAAAAGTTTGACTAGTTCGTAAGTTCGTCCGAGAA
1 TTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAA
* * *
1391 CCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTTAAAGACCAAAATTTGTTTACAAAA
66 CCAAGAGAGAAACAATTCTCATGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAA
* * * * * * *
1456 TCACAAACTATTTAGACCAAAAT-ACGCGATTTTCGGAGCATTGAATGTTAAGAAAATGGCTCAA
131 TGACAAACTATTTAGACC-AAATGATGCGATTTCCCGAGCATAGAATGTT-CGAAAATTGCTCAA
* *
1520 AGGAATGGATAGTCTTGAATGC
194 AGGAATGGATCGTCTTGAATAC
* * * *
1542 TTTGAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTCGACTAGTTCGTAAA-TTCGTCCTAGA
1 TTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCG-AAAGTTCGTCCAAGA
* * * * ** *
1606 ACCACA-AGAGAAACAATTCACATGTAAATAGGCTTTTAATTCGAAGAATAAAAGTTGTTTACAT
65 ACCA-AGAGAGAAACAATTCTCATGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAA
* * ** * * * * * *
1670 AATGACAAAGTTTTTAGACTGAATGATACGA-TTCCCGAGCGTGGAAAGTTCGAAAAATTGGTCG
129 AATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATAGAATGTTCG-AAAATTGCTCA
*
1734 AAGGAATGGATCGTCTTGAGTAC
193 AAGGAATGGATCGTCTTGAATAC
* * ** * * ** * * * * *
1757 TCTCAGGAACTTAAGTTACAAAAGAGCTATTAAATGTTCCG-CAAGTACGGAAGTTCGTCCAAAA
1 TTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTT-TGACAAGTTCGAAAGTTCGTCCAAGA
* *
1821 ACCATGAGAGAAACAATCCTCATGTAAATAAGTTTTTAATTCAAAGACCAAAAGGTT-TTTACAA
65 ACCAAGAGAGAAACAATTCTCATGTAAATAAGTTTTTAATTCAAAGACCAAAA-GTTGTTTACAA
* * *
1885 AATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTTGAAAATTTGCACA
129 AATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATAGAATGTTCGAAAA-TTGCTCA
*
1950 AAGGAATGGATCGTCTTTAATAC
193 AAGGAATGGATCGTCTTGAATAC
* * ** * * **
1973 TGTCAA-GAACCAAAGTTATAACAAAAGAACTTGTAAATTTTTGAAAAGTTTGAAAGTTAATCCA
1 T-TTAAGGAACCAAAGTTAT---AAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCA
* * * * * *
2037 AGAACCAAGAAAGAAA-ATATTCTCATGCAAATAAATTTTAAATCCAAACACCAAAAGTTGTTTA
62 AGAACCAAGAGAGAAACA-ATTCTCATGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTA
* * * * * *
2101 CCATATGACAAACTATTTTGACCAAATGATGCAAATTT-TCGAGAAT-GAAATGTTCGAAAAATT
126 CAAAATGACAAACTATTTAGACCAAATGATGC-GATTTCCCGAGCATAG-AATGTTCG-AAAATT
* * * * * * *
2164 GGTTGAAA-TAATGCATCTTTTTAAATAC
188 -GCTCAAAGGAATGGATCGTCTTGAATAC
* * ** * *
2192 TATT-AGGAACCAAAGTTATAAAAGCACTTGTAAATTTTTGA-AAGTTCGGAAGTTCATCCAAGA
1 T-TTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGA
*** *
2255 ACTGGGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAA
65 ACCAAGAGAGAAACAATTCTCATGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAA
* * *
2320 ATGACAAACTATTTAGACCAAATGATGCCATTTCTCGAGCA-AGGAATGTTCGGAAAATGGCTCA
130 ATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATA-GAATGTTC-GAAAATTGCTCA
* *
2384 AATGAATGGATAGTCTTGAATAC
193 AAGGAATGGATCGTCTTGAATAC
* * * *
2407 TTTAAGGAACCAAAGTTGTAAAAGAACTCGTAAAAGTTTGACTAGTTCGTAAGTTCGTCCGAGAA
1 TTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAA
* * *
2472 CCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTTAAAGACCAAAATTTGTTTACAAAA
66 CCAAGAGAGAAACAATTCTCATGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAA
* * * * * * *
2537 TCACAAACTATTTAGACCAAAAT-ACGCGATTTTCGGAGCATTGAATGTTAAGAAAATGGCTCAA
131 TGACAAACTATTTAGACC-AAATGATGCGATTTCCCGAGCATAGAATGTT-CGAAAATTGCTCAA
*
2601 AGGAATGGATAGTCTTGAATAC
194 AGGAATGGATCGTCTTGAATAC
* * * * *
2623 TTTGAGGAACCAAAGCTATAAAAGAACTCGTAAAAGTTCGACTAGTTCGTAAA-TTCGTCCTAGA
1 TTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCG-AAAGTTCGTCCAAGA
* * * * ** *
2687 ACCACA-AGAGAAACAATTCACATGTAAATAGGCTTTTAATTCGAAGAATAAAAGTTGTTTACAT
65 ACCA-AGAGAGAAACAATTCTCATGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAA
* * ** *
2751 AATGACAAAGTTTTTAGACTGAATGATACGA-TTCCCGAGC
129 AATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGC
2791 GTGGAAAGTT
Statistics
Matches: 2097, Mismatches: 372, Indels: 158
0.80 0.14 0.06
Matches are distributed among these distances:
214 75 0.04
215 537 0.26
216 951 0.45
217 176 0.08
218 33 0.02
219 305 0.15
220 20 0.01
ACGTcount: A:0.41, C:0.15, G:0.17, T:0.28
Consensus pattern (215 bp):
TTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAA
CCAAGAGAGAAACAATTCTCATGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAA
TGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATAGAATGTTCGAAAATTGCTCAAAG
GAATGGATCGTCTTGAATAC
Found at i:1472 original size:650 final size:647
Alignment explanation
Indices: 28--2796 Score: 2758
Period size: 650 Copynumber: 4.3 Consensus size: 647
18 CCTTTAGTAG
* * * *
28 TTTAAGGAACCGAAGTTATAAAGGAACT-GATAAAAAGTTTGACAAGTTTAG-AAGTTCGTCTAA
1 TTTAAGGAACCAAAGTTATAAAAGAACTCG-T-AAAAGTTTGACAAG-TTCGTAAGTTCGTCCAA
* * *
91 GAACCAAGAGAGAAACAATTGTCATGTAAAT-A-TTTTTAATTCAAAGACGAAAAGTTGATTACA
63 GAACCAAGAGAGAAACAATTCTCATGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACA
* * * ** *
154 AAATGAAAAACTATTTAGACCAAATGATGCGATTTCCCAAGCGTATAATGTTCAGAAAATTGCTC
128 AAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTGAGAAAATTGCTC
* ** * *
219 GAAGGAATGGATCGTCTTGAATACTTTAAGGAACTGAAGTTATAAAAGAACTCATAAAAGCTTGA
193 AAAGGAATGGATCGTCTTGAATACTTTAA-GAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGA
* * * * * * *
284 CAAGTTCGAAAGTTCAGCCAAGAACAAAGAGAGAAACAGTTCTGACGTAAATAAGTTTTTAATTC
257 AAAGTTCGAAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTAAATCC
* * * * *
349 AAAGAGCAAAAGTTGTTTACAAAATGACAAACTATTTAAACCAAATAATGCGATTTTTCGAGCAT
322 AAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGC-AATTTTCGAGCAA
* * * *
414 TG-AATGTTCGAAAAACTGGTCGAAGCAT-A-GGATCGCCTTGAATAATTTAAGGAACCGAAGTT
386 TGAAATGTTCGAAAAATTGGTCGAA--ATAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTT
*
476 ATAAAAGAACTTGTAAAAGTTTGACAAGATCGGAAGTTCATCCAAAAACCAAGAGAGAAACAATT
449 ATAAAAGAACTTGTAAAAGTTTGACAAGTTCGGAAGTTCATCCAAAAACCAAGAGAGAAACAATT
* * * * *
541 CTCACGTAAATAAGTTTTCAATTCAAAGACCAAAAGTTGTTCACAAAATTAAAAAAAC-ATTAAG
514 CTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAA-T-GACAAACTATTTAG
*** * * * *
605 AATGAATGATGCGATTTCCCGAGCCTGGAATGCTCGAAAAGTTAG-TCAAAGGAATGGGTCA-TC
577 ACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAA-TTGGCTCAAAGGAATGGAT-AGTC
* *
668 TTTAATGC
640 TTGAATAC
* * * * *
676 TCTCAGAAACCGAAGTTATAAAAGAACTGGTAAATA-TTTGACAAGTTC-TGAAGTTCGTCCAAG
1 TTTAAGGAACCAAAGTTATAAAAGAACTCGTAAA-AGTTTGACAAGTTCGT-AAGTTCGTCCAAG
* *
739 AACCAAGAGAGAAACAATCCTCATGTAAATAAGTTTTTAATTCAAAGACCAATAGGTT-TTTACA
64 AACCAAGAGAGAAACAATTCTCATGTAAATAAGTTTTTAATTCAAAGACCAA-AAGTTGTTTACA
* * *
803 AAATGACAAACTATTTAGACCGAATGATGCGATTTCCTGAGCATGGAATGTTTGA-AAAATTGCA
128 AAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATG-TTGAGAAAATTGCT
* * * **
867 CAAAGGAATGGATCGTCTTTAATACTGTCAAGAACCAAAGTTATAACAAAAGAACTTGTAAATTT
192 CAAAGGAATGGATCGTCTTGAATACT-TTAAGAACCAAAGTTAT---AAAAGAACTCGTAAAAGT
* * * * * * *
932 TTGAAAAGTTTGAAAGTTAATCCAAGAACCAAGAAACAAA-ATATTCTCATGCAAATAAATTTTA
253 TTGAAAAGTTCGAAAGTTCATCCAAGAACCAAGAGAGAAACA-ATTCTCACGTAAATAAGTTTTA
* * * *
996 AATCCAAACACCAAAAGTTGTTTACCATATGACAAACTATTTTGACCAAATGATGCAAATTTTCG
317 AATCCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGC-AATTTTCG
* * * * * * *
1061 AG-AATGAAATGTTCGAAAAGTTGGTTGAAATAATGCATCTTTTTAAATACTATT-CGGAACCAA
381 AGCAATGAAATGTTCGAAAAATTGGTCGAAATAATGGATCGTCTTGAATACT-TTAAGGAACCAA
* ** * ***
1124 AGTTATAAAAGCACTTGTAAATTTTTGA-AAGTTCGGAAGTTCATCCAAGAACTGGGAGAGAAAC
445 AGTTATAAAAGAACTTGTAAAAGTTTGACAAGTTCGGAAGTTCATCCAAAAACCAAGAGAGAAAC
1188 AATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTT
510 AATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTT
* * * *
1253 AGACCAAATGATGCCATTTCTCGAGCAAGGAATGTTCGGAAAA-TGGCTCAAATGAATGGATAGT
575 AGACCAAATGATGCGATTTCCCGAGCATGGAATGTTC-GAAAATTGGCTCAAAGGAATGGATAGT
1317 CTTGAATAC
639 CTTGAATAC
* * *
1326 TTTAAGGAACCAAAGTTGTAAAAGAACTCGTAAAAGTTTGACTAGTTCGTAAGTTCGTCCGAGAA
1 TTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGTAAGTTCGTCCAAGAA
* * *
1391 CCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTTAAAGACCAAAATTTGTTTACAAAA
66 CCAAGAGAGAAACAATTCTCATGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAA
* * * * * * *
1456 TCACAAACTATTTAGACCAAAAT-ACGCGATTTTCGGAGCATTGAATGTTAAGAAAATGGCTCAA
131 TGACAAACTATTTAGACC-AAATGATGCGATTTCCCGAGCATGGAATGTTGAGAAAATTGCTCAA
* * * * **
1520 AGGAATGGATAGTCTTGAATGCTTTGAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTCGACT
195 AGGAATGGATCGTCTTGAATACTTT-AAGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGAAA
* * * * * *
1585 AGTTCGTAAA-TTCGTCCTAGAACCACA-AGAGAAACAATTCACATGTAAATAGGCTTTT-AATT
259 AGTTCG-AAAGTTCATCCAAGAACCA-AGAGAGAAACAATTCTCACGTAAATAAG-TTTTAAATC
* ** * * * ** * * ** *
1647 CGAAGAATAAAAGTTGTTTACATAATGACAAAGTTTTTAGACTGAATGATACGATTCCCGAGC-G
321 CAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCAATTTTCGAGCAA
** * * * **
1711 TGGAAA-GTTCGAAAAATTGGTCGAAGGAATGGATCGTCTTGAGTACTCTCAGGAACTTAAGTTA
386 T-GAAATGTTCGAAAAATTGGTCGAAATAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTA
* * * * * * *
1775 CAAAAGAGCTAT-TAAATGTTCCG-CAAGTACGGAAGTTCGTCCAAAAACCATGAGAGAAACAAT
450 TAAAAGAACT-TGTAAAAGTT-TGACAAGTTCGGAAGTTCATCCAAAAACCAAGAGAGAAACAAT
* *
1838 CCTCATGTAAATAAGTTTTTAATTCAAAGACCAAAAGGTT-TTTACAAAATGACAAACTATTTAG
513 TCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAA-GTTGTTTACAAAATGACAAACTATTTAG
* * * *
1902 ACCAAATGATGCGATTTCCCGAGCATGGAATGTTTGAAAATTTGCACAAAGGAATGGATCGTCTT
577 ACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAATTGGCTCAAAGGAATGGATAGTCTT
*
1967 TAATAC
642 GAATAC
* * ** * * * **
1973 TGTCAA-GAACCAAAGTTATAACAAAAGAACTTGTAAATTTTTGAAAAGTTTGAAAGTTAATCCA
1 T-TTAAGGAACCAAAGTTAT---AAAAGAACTCGTAAAAGTTTGACAAGTTCGTAAGTTCGTCCA
* * * * * *
2037 AGAACCAAGAAAGAAA-ATATTCTCATGCAAATAAATTTTAAATCCAAACACCAAAAGTTGTTTA
62 AGAACCAAGAGAGAAACA-ATTCTCATGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTA
* * * * * * *
2101 CCATATGACAAACTATTTTGACCAAATGATGCAAATTT-TCGAGAATGAAATGTTCGA-AAAATT
126 CAAAATGACAAACTATTTAGACCAAATGATGC-GATTTCCCGAGCATGGAATGTT-GAGAAAATT
* * * * * * * * * * **
2164 GGTTGAAA-TAATGCATCTTTTTAAATACTATTAGGAACCAAAGTTATAAAAGCACTTGTAAATT
189 -GCTCAAAGGAATGGATCGTCTTGAATACT-TTAAGAACCAAAGTTATAAAAGAACTCGTAAAAG
* *** *
2228 TTTG-AAAGTTCGGAAGTTCATCCAAGAACTGGGAGAGAAACAATTCTCACGTAAATAAGTTTTT
252 TTTGAAAAGTTCGAAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTA
* *
2292 AATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCCATTTCTCG
317 AATCCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCAATTT-TCG
* * *
2357 AGCAA-GGAATGTTCGGAAAA-TGGCTC-AAATGAATGGATAGTCTTGAATACTTTAAGGAACCA
381 AGCAATGAAATGTTCGAAAAATTGG-TCGAAAT-AATGGATCGTCTTGAATACTTTAAGGAACCA
* * * * * * *
2419 AAGTTGTAAAAGAACTCGTAAAAGTTTGACTAGTTCGTAAGTTCGTCCGAGAACCAAGAGAGAAA
444 AAGTTATAAAAGAACTTGTAAAAGTTTGACAAGTTCGGAAGTTCATCCAAAAACCAAGAGAGAAA
* * *
2484 CAATTCTCACGTAAATAAGTTTTTAATTTAAAGACCAAAATTTGTTTACAAAATCACAAACTATT
509 CAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATT
* * * * *
2549 TAGACCAAAAT-ACGCGATTTTCGGAGCATTGAATGTTAAGAAAA-TGGCTCAAAGGAATGGATA
574 TAGACC-AAATGATGCGATTTCCCGAGCATGGAATGTT-CGAAAATTGGCTCAAAGGAATGGATA
2612 GTCTTGAATAC
637 GTCTTGAATAC
* * * * * *
2623 TTTGAGGAACCAAAGCTATAAAAGAACTCGTAAAAGTTCGACTAGTTCGTAAATTCGTCCTAGAA
1 TTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGTAAGTTCGTCCAAGAA
* * * * ** *
2688 CCACA-AGAGAAACAATTCACATGTAAATAGGCTTTTAATTCGAAGAATAAAAGTTGTTTACATA
66 CCA-AGAGAGAAACAATTCTCATGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAA
* * ** * *
2752 ATGACAAAGTTTTTAGACTGAATGATACGA-TTCCCGAGCGTGGAA
130 ATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAA
2797 AGTTCGA
Statistics
Matches: 1719, Mismatches: 336, Indels: 134
0.79 0.15 0.06
Matches are distributed among these distances:
645 3 0.00
646 81 0.05
647 414 0.24
648 50 0.03
649 234 0.14
650 638 0.37
651 116 0.07
652 181 0.11
653 2 0.00
ACGTcount: A:0.41, C:0.14, G:0.17, T:0.28
Consensus pattern (647 bp):
TTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGTAAGTTCGTCCAAGAA
CCAAGAGAGAAACAATTCTCATGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAA
TGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTGAGAAAATTGCTCAAA
GGAATGGATCGTCTTGAATACTTTAAGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGAAAAG
TTCGAAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTAAATCCAAAG
ACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCAATTTTCGAGCAATGAAA
TGTTCGAAAAATTGGTCGAAATAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAG
AACTTGTAAAAGTTTGACAAGTTCGGAAGTTCATCCAAAAACCAAGAGAGAAACAATTCTCACGT
AAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGA
TGCGATTTCCCGAGCATGGAATGTTCGAAAATTGGCTCAAAGGAATGGATAGTCTTGAATAC
Done.