Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01013555.1 Kokia drynarioides strain JFW-HI SEQ_128581, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5935
ACGTcount: A:0.33, C:0.13, G:0.16, T:0.37

Warning! 50 characters in sequence are not A, C, G, or T


Found at i:3216 original size:46 final size:46

Alignment explanation


    Indices: 3134--3235  Score: 132
    Period size: 46  Copynumber: 2.2  Consensus size: 46

       3124 ACTACTAATT

                   *                **  *  *              
       3134 TGTAATATTAGTTATGCACATAGACGATGTTTTAGTTATCATGTGG
          1 TGTAATACTAGTTATGCACATAGAAAATATTGTAGTTATCATGTGG

                                 *                        
       3180 TGTAATACTAGTTATGCACATGGAAAATATTGTAGTTATCATGTGG
          1 TGTAATACTAGTTATGCACATAGAAAATATTGTAGTTATCATGTGG

            *   *     
       3226 GGTACTACTA
          1 TGTAATACTA

       3236 ATTTGTAATA


Statistics
Matches: 48,  Mismatches: 8, Indels: 0
        0.86            0.14        0.00

Matches are distributed among these distances:
  46   48  1.00

ACGTcount: A:0.30, C:0.10, G:0.22, T:0.38


Consensus pattern (46 bp):   
TGTAATACTAGTTATGCACATAGAAAATATTGTAGTTATCATGTGG

Found at i:5141 original size:23 final size:22

Alignment explanation


    Indices: 5105--5148  Score: 61
    Period size: 23  Copynumber: 2.0  Consensus size: 22

       5095 TAAATATTTC

                     *             
       5105 ATTAAATAATTTGGGTTGAATTA
          1 ATTAAATAAATTGGGTT-AATTA

                 *               
       5128 ATTAATTAAATTGGGTTAATT
          1 ATTAAATAAATTGGGTTAATT

       5149 TTATTTCTTT


Statistics
Matches: 19,  Mismatches: 2, Indels: 1
        0.86            0.09        0.05

Matches are distributed among these distances:
  22    4  0.21
  23   15  0.79

ACGTcount: A:0.39, C:0.00, G:0.16, T:0.45


Consensus pattern (22 bp):   
ATTAAATAAATTGGGTTAATTA
Done.