Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01013558.1 Kokia drynarioides strain JFW-HI SEQ_128584, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 7958
ACGTcount: A:0.29, C:0.16, G:0.19, T:0.33
Warning! 127 characters in sequence are not A, C, G, or T
Found at i:596 original size:31 final size:32
Alignment explanation
Indices: 548--609 Score: 90
Period size: 31 Copynumber: 2.0 Consensus size: 32
538 ATAGATTTAT
*
548 AATTGAATCAAAAGCTTAAAAATTTATAAAAC
1 AATTAAATCAAAAGCTTAAAAATTTATAAAAC
**
580 AATTAAATC-AAAGCTTAAGGATTTATAAAA
1 AATTAAATCAAAAGCTTAAAAATTTATAAAA
610 TGCTTATATA
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
31 19 0.70
32 8 0.30
ACGTcount: A:0.55, C:0.08, G:0.08, T:0.29
Consensus pattern (32 bp):
AATTAAATCAAAAGCTTAAAAATTTATAAAAC
Found at i:1539 original size:96 final size:96
Alignment explanation
Indices: 1355--1546 Score: 230
Period size: 96 Copynumber: 2.0 Consensus size: 96
1345 TTTTTACGAA
* ** *
1355 AAGGATATTCGATAATTTTGATTCGAAGAAAGGTTGCACCTAGTAAGTTAAGGCGCAATATTTCA
1 AAGGATATTCGATAATTTCGATTCGAAGAAAAATTGCACCTAGTAAGTTAAGGCACAATATTTCA
*
1420 GAACCGAAGATAAGGAAACATTGCCTCGATT
66 GAACCGAAGATAAAGAAACATTGCCTCGATT
* * * *
1451 AAGGGTATTCGATTATTTCGATTTGAAGAAAAATTGCACCTAGTGAGTTAAGGCACAA-ATTTTC
1 AAGGATATTCGATAATTTCGATTCGAAGAAAAATTGCACCTAGTAAGTTAAGGCACAATA-TTTC
*
1515 -GAAACTCGAA-ATATAAG-AATATTGCCTCGATT
65 AG-AAC-CGAAGATA-AAGAAACATTGCCTCGATT
1547 TTAAAGTTTT
Statistics
Matches: 82, Mismatches: 10, Indels: 8
0.82 0.10 0.08
Matches are distributed among these distances:
95 2 0.02
96 74 0.90
97 6 0.07
ACGTcount: A:0.36, C:0.14, G:0.20, T:0.29
Consensus pattern (96 bp):
AAGGATATTCGATAATTTCGATTCGAAGAAAAATTGCACCTAGTAAGTTAAGGCACAATATTTCA
GAACCGAAGATAAAGAAACATTGCCTCGATT
Found at i:2564 original size:803 final size:799
Alignment explanation
Indices: 951--2491 Score: 2061
Period size: 803 Copynumber: 1.9 Consensus size: 799
941 ATCAAAAAAT
* *
951 AATGGGAGTCGCCACCAATCCTTTATTCGGTGTGATTGGATCATCATAAAACGTTTTTAAAAAAC
1 AATGGGAGTCGCCACCAATCCTTTATTCGGTGTGATTGGATCATCACAAAACG-TCTTAAAAAAC
*
1016 CGTTTTGAAAACACGCAGGTCTTCGAAATTCAGAAAAATAGGTTCGGGAGTCAGTTACGAATGAG
65 CGTTTTGAAAACACGCAGGTCTTCGAAATCCAGAAAAATAGGTTCGGGAGTCAGTTACGAATGAG
* *
1081 GAAGGATTAGCACCCTCATACGCCCAAAATTGGTACCGTATTGATTATTTTTGCGTCTTAATTTG
130 GAAGGATTAGCACCCTCATACGCCCAAAATTGGTACCATATTGATTATTTTCGCGTCTTAATTTG
* * * *
1146 TAACATTTAAAAGCTTGAATAAAGTTTAAAATACGATCCTTGAATGCATGAGTTGAGTTTTAAAG
195 TAAAATTTAAAAGCTCGAATAAAGTTTAAAATACGATCCTTGAATGCATGAGTTAAGTTTAAAAG
* * * *
1211 AAATGGAGTTTGTTTGGAAATCCCGTTATCTCAAAGTGATCGAGGAAGAAAGTTATGTCCAGTGA
260 AAATGGAGTTTGTTTGGAAATCCCGCTATCTCAAAGTGATCAAGGAAGAAAGTTACGTCCAATGA
** * *
1276 GTTAGGACATGACATTTCAAGATCTAGAAATAACGAGCTTTCCTTTGTAAAACCTTTTTTAAACT
325 GTTAGGACACAACATTTCAAGATCCAAAAATAACGAGCTTTCCTTTGTAAAACCTTTTTTAAA--
* *** *
1341 TTGATTTTTACGAAAAGGATATTCGATAATTTTGATTCGAAGAAAGGTTGCACCTAGTAAGTTAA
388 -T-ATTTTCACGAAAAGGATATTCGATAATCCCGATTCGAAGAAAGGTTGCACCTAGTAAGTAAA
1406 GGCGCAATATTTCAGAACCGAAGATAAGGAAACATTGCCTCGATTAAGGGTATTCGATTATTTCG
451 GGCGCAATATTTCAGAACCGAAGATAAGGAAACATTGCCTCGATTAAGGGTATTCGATTATTTCG
* * *
1471 ATTTGAAGAAAAATTGCACCTAGTGAGTTAAGGCACAAATTTTCGAAACTCGAAATATAAGAATA
516 ATTTGAAGAAAAATTGCACCTAGTAAGTTAAGGCACAAAGTTTCGAAACTCGAAATAAAAGAATA
* * *
1536 TTGCCTCGATTTTAAAGTTTTTATTAAAAACAATTTTTGAAAACAAGCATGCGAGTTAAATATGA
581 TTGCCTCGATTTTAAAGTTTTTATGAAAAACAATTTTTGAAAACAAACATGCGAGTTAAATAGGA
* * ***
1601 ATAAGCAGTTAATAATAGATATTAAATAACGCGAAGCAAGATGAATAAAAAGATAAATTATTTGC
646 ATAAGCAGTTAACAATAGATATT-AATAACGCGAAGCAAGATAAATAAAAAGATAAATTATCCAC
* * * ***** ** *
1666 GAAAAATAAAAAATGCAAAATACGAGTGCATAATGTCAAAACCATCTCTTTTTGAAAACGACGTG
710 GAAAAATAAAAAATGCAAAATACGAGCGCAAAAAGTCAAAACCAAAGAATGATGAAAACGA-GAG
** **
1731 TTTCGAAAATTATTTTAAAGTTGGAA
774 TTTCGAAAAAAATTTTAAAGGGGGAA
* **
1757 AATGGGAGTCGCCACCAATCCTTTATTCGGTGTGATTGGATCA-CTACAAAACG-CTT-GAAATT
1 AATGGGAGTCGCCACCAATCCTTTATTCGGTGTGATTGGATCATC-ACAAAACGTCTTAAAAAAC
* **** * * *
1819 CGTTTTGAAAAATATTTTGGTCTTCGCAATCCAG-AAAAT-GAGTTCGGGAGTCGGTTACGCATG
65 CGTTTTG-AAAACACGCAGGTCTTCGAAATCCAGAAAAATAG-GTTCGGGAGTCAGTTACGAATG
* *
1882 AGGAAGGGTTAGCACCCTCATACGCCCAAAATTGGTACCATATTGATTATTTTCGGGTCTTAATT
128 AGGAAGGATTAGCACCCTCATACGCCCAAAATTGGTACCATATTGATTATTTTCGCGTCTTAATT
* * *
1947 TGTAAAATTTAAAAGCTCGAGTATAGTTTAAAATTCGATCCTTGAATGCATGAGTTAAGTTTAAA
193 TGTAAAATTTAAAAGCTCGAATAAAGTTTAAAATACGATCCTTGAATGCATGAGTTAAGTTTAAA
*
2012 AGAAATTGG-GTTTGTTTGGAAATCCCGCTATTTCAAAGTGATCAAGGAAGAAAGTTACGTCCAA
258 AGAAA-TGGAGTTTGTTTGGAAATCCCGCTATCTCAAAGTGATCAAGGAAGAAAGTTACGTCCAA
* *
2076 TGTGTTAGGACACAACATTTCAAGATCCAAAAATGACGAGCTTTCCTTTGTAAAA-C-TTTTTAA
322 TGAGTTAGGACACAACATTTCAAGATCCAAAAATAACGAGCTTTCCTTTGTAAAACCTTTTTTAA
** * * *
2139 A-ATTTTCGGGAAAAGGATATTCGATTATCCCGATTTGAAGAAAGGTTGCACCTAGTGAGTAAAG
387 ATATTTTCACGAAAAGGATATTCGATAATCCCGATTCGAAGAAAGGTTGCACCTAGTAAGTAAAG
* * * *
2203 GCGCAATATTTCAGAATCGAAGATAAGGAAACATTGCCTTGGTTAAGGGTATTCGATTATTTTGA
452 GCGCAATATTTCAGAACCGAAGATAAGGAAACATTGCCTCGATTAAGGGTATTCGATTATTTCGA
*
2268 TTTGAGGAAAAATTGCACCTAGTAAGTTAAGGCACAAAGTTTCGAAACTCGAAATAAAAGAATAT
517 TTTGAAGAAAAATTGCACCTAGTAAGTTAAGGCACAAAGTTTCGAAACTCGAAATAAAAGAATAT
* *
2333 TGCCTCGTTTTTAAAGTTTTTATGAAAAACAA-TTTTGAAAACAAACATGCGAGTTTAATAGGAA
582 TGCCTCGATTTTAAAGTTTTTATGAAAAACAATTTTTGAAAACAAACATGCGAGTTAAATAGGAA
* * * **
2397 TAAGTAGTTAACAGT-GAATATT-A-AACGC-AACGTGAA-ATAAATAGGAAGATAAATTATCCA
647 TAAGCAGTTAACAATAG-ATATTAATAACGCGAA-G-CAAGATAAATAAAAAGATAAATTATCCA
* *
2457 CGAAAAA-ATCAAGATGCAAAATACGAGCGCAAAAA
709 CGAAAAATA-AAAAATGCAAAATACGAGCGCAAAAA
2492 AAGTTAATGA
Statistics
Matches: 653, Mismatches: 74, Indels: 30
0.86 0.10 0.04
Matches are distributed among these distances:
791 3 0.00
792 52 0.08
793 3 0.00
794 1 0.00
795 46 0.07
796 205 0.31
801 8 0.01
802 2 0.00
803 258 0.40
804 24 0.04
805 1 0.00
806 50 0.08
ACGTcount: A:0.37, C:0.14, G:0.19, T:0.30
Consensus pattern (799 bp):
AATGGGAGTCGCCACCAATCCTTTATTCGGTGTGATTGGATCATCACAAAACGTCTTAAAAAACC
GTTTTGAAAACACGCAGGTCTTCGAAATCCAGAAAAATAGGTTCGGGAGTCAGTTACGAATGAGG
AAGGATTAGCACCCTCATACGCCCAAAATTGGTACCATATTGATTATTTTCGCGTCTTAATTTGT
AAAATTTAAAAGCTCGAATAAAGTTTAAAATACGATCCTTGAATGCATGAGTTAAGTTTAAAAGA
AATGGAGTTTGTTTGGAAATCCCGCTATCTCAAAGTGATCAAGGAAGAAAGTTACGTCCAATGAG
TTAGGACACAACATTTCAAGATCCAAAAATAACGAGCTTTCCTTTGTAAAACCTTTTTTAAATAT
TTTCACGAAAAGGATATTCGATAATCCCGATTCGAAGAAAGGTTGCACCTAGTAAGTAAAGGCGC
AATATTTCAGAACCGAAGATAAGGAAACATTGCCTCGATTAAGGGTATTCGATTATTTCGATTTG
AAGAAAAATTGCACCTAGTAAGTTAAGGCACAAAGTTTCGAAACTCGAAATAAAAGAATATTGCC
TCGATTTTAAAGTTTTTATGAAAAACAATTTTTGAAAACAAACATGCGAGTTAAATAGGAATAAG
CAGTTAACAATAGATATTAATAACGCGAAGCAAGATAAATAAAAAGATAAATTATCCACGAAAAA
TAAAAAATGCAAAATACGAGCGCAAAAAGTCAAAACCAAAGAATGATGAAAACGAGAGTTTCGAA
AAAAATTTTAAAGGGGGAA
Found at i:2594 original size:30 final size:28
Alignment explanation
Indices: 2553--2977 Score: 309
Period size: 30 Copynumber: 14.7 Consensus size: 28
2543 CGGATGCACG
* *
2553 GGGGCAAAATGGTAGTTTTGGAAGGTTC
1 GGGGTAAAATGGTATTTTTGGAAGGTTC
* *
2581 GGAGTCAAAAATGGAATTTTTGGAA-GTTC
1 GGGGT--AAAATGGTATTTTTGGAAGGTTC
* *
2610 GAGGGTAAAATGGTAATTTTCGAAAGGTTC
1 G-GGGTAAAATGGT-ATTTTTGGAAGGTTC
*
2640 GGGGTCAAAAATGGGATTTTTGGAA-GTTC
1 GGGGT--AAAATGGTATTTTTGGAAGGTTC
2669 GAGGGTAAAATGGTAATTTTTTGGAAGGTTC
1 G-GGGTAAAATGGT-A-TTTTTGGAAGGTTC
2700 GGGGGTCAAAATGAG-ATTTTTGGAA-GTTC
1 -GGGGT-AAAATG-GTATTTTTGGAAGGTTC
* *
2729 GGGGGTAAAATGGTAATTTTAGAAGGTTC
1 -GGGGTAAAATGGTATTTTTGGAAGGTTC
* *
2758 GTGGTAAAAAATGAG-ATTTTTTGAA-GTTC
1 GGGGT--AAAATG-GTATTTTTGGAAGGTTC
*
2787 GGGGGTAAAATGGTAATTTTTAGAAGGTTC
1 -GGGGTAAAATGGT-ATTTTTGGAAGGTTC
*
2817 GGGGTCAAAAATGGGATTTTTGGAA-GTTC
1 GGGGT--AAAATGGTATTTTTGGAAGGTTC
* *
2846 ATGGGTAAAATGGTAATTTTTAGAAGG---
1 -GGGGTAAAATGGT-ATTTTTGGAAGGTTC
***
2873 GGTCAAAAATGAG-ATTTTTGGAA-GTTC
1 GGGGTAAAATG-GTATTTTTGGAAGGTTC
* **
2900 GGGTGTAAAGTGGTAATTTTTAAAAGGTTC
1 GGG-GTAAAATGGT-ATTTTTGGAAGGTTC
*
2930 GGGGTTAAAAATGGGATTTTTGGAA-GTTC
1 GGGG-T-AAAATGGTATTTTTGGAAGGTTC
*
2959 GGGGTAAAATGGTAATTTT
1 GGGGTAAAATGGTATTTTT
2978 CAAAAAGTTT
Statistics
Matches: 318, Mismatches: 41, Indels: 77
0.73 0.09 0.18
Matches are distributed among these distances:
24 1 0.00
25 9 0.03
26 7 0.02
27 18 0.06
28 54 0.17
29 85 0.27
30 106 0.33
31 30 0.09
32 7 0.02
33 1 0.00
ACGTcount: A:0.31, C:0.05, G:0.32, T:0.33
Consensus pattern (28 bp):
GGGGTAAAATGGTATTTTTGGAAGGTTC
Found at i:2984 original size:59 final size:58
Alignment explanation
Indices: 2553--2977 Score: 553
Period size: 59 Copynumber: 7.3 Consensus size: 58
2543 CGGATGCACG
* * * * *
2553 GGGGCAAAATGGT-AGTTTTGGAAGGTTCGGAGTCAAAAATGGAATTTTTGGAAGTTC
1 GGGGTAAAATGGTAATTTTTAGAAGGTTCGGGGTCAAAAATGGGATTTTTGGAAGTTC
*
2610 GAGGGTAAAATGGTAA-TTTTCGAAAGGTTCGGGGTCAAAAATGGGATTTTTGGAAGTTC
1 G-GGGTAAAATGGTAATTTTTAG-AAGGTTCGGGGTCAAAAATGGGATTTTTGGAAGTTC
* *
2669 GAGGGTAAAATGGTAATTTTTTGGAAGGTTCGGGGGTC-AAAATGAGATTTTTGGAAGTTC
1 G-GGGTAAAATGGTAA-TTTTTAGAAGGTTC-GGGGTCAAAAATGGGATTTTTGGAAGTTC
* * * *
2729 GGGGGTAAAATGGTAA-TTTTAGAAGGTTCGTGGTAAAAAATGAGATTTTTTGAAGTTC
1 -GGGGTAAAATGGTAATTTTTAGAAGGTTCGGGGTCAAAAATGGGATTTTTGGAAGTTC
2787 GGGGGTAAAATGGTAATTTTTAGAAGGTTCGGGGTCAAAAATGGGATTTTTGGAAGTTC
1 -GGGGTAAAATGGTAATTTTTAGAAGGTTCGGGGTCAAAAATGGGATTTTTGGAAGTTC
* *
2846 ATGGGTAAAATGGTAATTTTTAGAA-----GGGGTCAAAAATGAGATTTTTGGAAGTTC
1 -GGGGTAAAATGGTAATTTTTAGAAGGTTCGGGGTCAAAAATGGGATTTTTGGAAGTTC
* * *
2900 GGGTGTAAAGTGGTAATTTTTAAAAGGTTCGGGGTTAAAAATGGGATTTTTGGAAGTTC
1 GGG-GTAAAATGGTAATTTTTAGAAGGTTCGGGGTCAAAAATGGGATTTTTGGAAGTTC
2959 GGGGTAAAATGGTAATTTT
1 GGGGTAAAATGGTAATTTT
2978 CAAAAAGTTT
Statistics
Matches: 330, Mismatches: 23, Indels: 29
0.86 0.06 0.08
Matches are distributed among these distances:
53 2 0.01
54 47 0.14
57 5 0.02
58 80 0.24
59 142 0.43
60 42 0.13
61 12 0.04
ACGTcount: A:0.31, C:0.05, G:0.32, T:0.33
Consensus pattern (58 bp):
GGGGTAAAATGGTAATTTTTAGAAGGTTCGGGGTCAAAAATGGGATTTTTGGAAGTTC
Found at i:2985 original size:29 final size:28
Alignment explanation
Indices: 2604--2986 Score: 108
Period size: 29 Copynumber: 13.2 Consensus size: 28
2594 GAATTTTTGG
*
2604 AAGTTCGAGGGTAAAATGGTAATTTTCGAA
1 AAGTTCG-GGGTAAAATGGTAATTTT-AAA
* * ***
2634 AGGTTCGGGGTCAAAAATGG-GATTTTTGG
1 AAGTTCGGGGT--AAAATGGTAATTTTAAA
**
2663 AAGTTCGAGGGTAAAATGGTAATTTTTTGGA
1 AAGTTCG-GGGTAAAATGGTAA--TTTTAAA
* ***
2694 AGGTTCGGGGGTCAAAAT-G-AGATTTTTGG
1 AAGTTC-GGGGT-AAAATGGTA-ATTTTAAA
*
2723 AAGTTCGGGGGTAAAATGGTAATTTTAGA
1 AAGTTC-GGGGTAAAATGGTAATTTTAAA
* * ***
2752 AGGTTCGTGGTAAAAAAT-G-AGATTTTTTG
1 AAGTTCGGGGT--AAAATGGTA-ATTTTAAA
*
2781 AAGTTCGGGGGTAAAATGGTAATTTTTAGA
1 AAGTTC-GGGGTAAAATGGTAA-TTTTAAA
* * ***
2811 AGGTTCGGGGTCAAAAATGG-GATTTTTGG
1 AAGTTCGGGGT--AAAATGGTAATTTTAAA
* * *
2840 AAGTTCATGGGTAAAATGGTAATTTTTAG
1 AAGTTC-GGGGTAAAATGGTAATTTTAAA
***
2869 AA----GGGGTCAAAAAT-G-AGATTTTTGG
1 AAGTTCGGGGT--AAAATGGTA-ATTTTAAA
*
2894 AAGTTCGGGTGTAAAGTGGTAATTTTTAAA
1 AAGTTCGGG-GTAAAATGGTAA-TTTTAAA
* * ***
2924 AGGTTCGGGGTTAAAAATGG-GATTTTTGG
1 AAGTTCGGGG-T-AAAATGGTAATTTTAAA
2953 AAGTTCGGGGTAAAATGGTAATTTTCAAA
1 AAGTTCGGGGTAAAATGGTAATTTT-AAA
2982 AAGTT
1 AAGTT
2987 TAGGGACCTC
Statistics
Matches: 266, Mismatches: 50, Indels: 75
0.68 0.13 0.19
Matches are distributed among these distances:
24 5 0.02
25 10 0.04
26 5 0.02
27 7 0.03
28 39 0.15
29 100 0.38
30 58 0.22
31 36 0.14
32 6 0.02
ACGTcount: A:0.31, C:0.05, G:0.31, T:0.33
Consensus pattern (28 bp):
AAGTTCGGGGTAAAATGGTAATTTTAAA
Found at i:4130 original size:16 final size:16
Alignment explanation
Indices: 4074--4130 Score: 53
Period size: 16 Copynumber: 3.4 Consensus size: 16
4064 CTTTCGTTTT
* *
4074 TATTATTATTCATTAA
1 TATTATTATTAATAAA
4090 TATTATTAACATTAA-AAA
1 TATTATT---ATTAATAAA
4108 TATTTATTATTAATAAA
1 TA-TTATTATTAATAAA
4125 TATTAT
1 TATTAT
4131 GAAAACCGCC
Statistics
Matches: 34, Mismatches: 2, Indels: 10
0.74 0.04 0.22
Matches are distributed among these distances:
16 16 0.47
17 5 0.15
18 4 0.12
19 9 0.26
ACGTcount: A:0.46, C:0.04, G:0.00, T:0.51
Consensus pattern (16 bp):
TATTATTATTAATAAA
Found at i:4931 original size:6 final size:6
Alignment explanation
Indices: 4885--4952 Score: 61
Period size: 6 Copynumber: 11.5 Consensus size: 6
4875 TGGGTTTTAT
* * *
4885 TTTAAA TTTTAAA TTTGAAA -ATAAT TTTAAA CTTAAA -TTAAA TTTAAA
1 TTTAAA -TTTAAA TTT-AAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA
*
4933 TTTAAA -ATAAA TTTAAA TTT
1 TTTAAA TTTAAA TTTAAA TTT
4953 TAAACAAATT
Statistics
Matches: 50, Mismatches: 7, Indels: 9
0.76 0.11 0.14
Matches are distributed among these distances:
5 11 0.22
6 30 0.60
7 9 0.18
ACGTcount: A:0.50, C:0.01, G:0.01, T:0.47
Consensus pattern (6 bp):
TTTAAA
Found at i:4932 original size:17 final size:17
Alignment explanation
Indices: 4887--4983 Score: 97
Period size: 17 Copynumber: 5.6 Consensus size: 17
4877 GGTTTTATTT
4887 TAAATTTTAAATTTGAAAA
1 TAAA-TTTAAATTT-AAAA
* * *
4906 TAATTTTAAACTTAAAT
1 TAAATTTAAATTTAAAA
4923 TAAATTTAAATTTAAAA
1 TAAATTTAAATTTAAAA
*
4940 TAAATTTAAATTTTAAA
1 TAAATTTAAATTTAAAA
* *
4957 CAAATTT-AATTATAGAA
1 TAAATTTAAATT-TAAAA
*
4974 TAAAGTTAAA
1 TAAATTTAAA
4984 GGGAGTATGG
Statistics
Matches: 64, Mismatches: 12, Indels: 5
0.79 0.15 0.06
Matches are distributed among these distances:
16 4 0.06
17 47 0.73
18 10 0.16
19 3 0.05
ACGTcount: A:0.54, C:0.02, G:0.03, T:0.41
Consensus pattern (17 bp):
TAAATTTAAATTTAAAA
Found at i:5987 original size:205 final size:203
Alignment explanation
Indices: 5317--6374 Score: 1116
Period size: 205 Copynumber: 5.2 Consensus size: 203
5307 TTTCATTGAC
* * * *
5317 TTGGCCTTCTTCCCAGTATCTCATTAGGAAGATGACTGTGTAGTTTGTTTCAATTCGCTTCTCTG
1 TTGGCCTTCTTCTCAGTATCTCATCAGGAAGATGAC-GCGTCGTTTGTTTCAATTCGCTTCTCTG
*
5382 TATCTCATCAGGAAGACGAATTTTGATCAACTTCTTCGTATCTCATCAGGAAGCTAACCGTTTTA
65 TATCTCATCAGGAAGACGAATTTTGATCAACTTCTCCGTATCTCATCAGGAAGCTAACCG-TTTA
* * * * * * *
5447 TTATTTCGTCCTGCATCTCAATATCTTATCAAGAAGCTGGGGTTCGAAGGTTTATTCATCGTGCG
129 TTACTTCGTCATGCTTCTCAGTATCTCATCAGGAAGCTGGGGTTCGAAGGCTTATTCATCGTGCG
5512 TGGGTTCGGT
194 TGGGTTCGGT
* * * * *
5522 TTGGCCTTCTTCTCAGTATCTCATCGGGAAGATGACCGCATCGCTTGTTTCAATCCGCCTCTCTG
1 TTGGCCTTCTTCTCAGTATCTCATCAGGAAGATGA-CGCGTCGTTTGTTTCAATTCGCTTCTCTG
* * * * *
5587 CATCTCATCAGGAAGACGAATTTGGTTC-ACTTCTCAGTATCTCATCTGGAAGCTAACCGTTTAT
65 TATCTCATCAGGAAGACGAATTTTGATCAACTTCTCCGTATCTCATCAGGAAGCTAACCGTTTAT
* * * ** * * *
5651 TGCTTCGACCTGCTTCTTGGTATCTCATCAGGAAGCTGGGGTTCGAA-GATT-TTGCTTGCTTTT
130 TACTTCGTCATGCTTCTCAGTATCTCATCAGGAAGCTGGGGTTCGAAGGCTTATT-CAT-C--GT
* * *
5714 AGCGTAGGCCTCCTGAT
191 -GCGT-GG-GTTC-GGT
* * * ** * *
5731 TTGGTCTTCTTCTTAGCATCTCATTGGGAAGATGACTGCGTAGTGTGTTTCAATTCGCTTCTCTG
1 TTGGCCTTCTTCTCAGTATCTCATCAGGAAGATGAC-GCGTCGTTTGTTTCAATTCGCTTCTCTG
*
5796 TATCTCATCAGGAAGACGAATTTTGATCAACTTCTCCGTATCTCATTAGGAAGCTAACCGCTTTA
65 TATCTCATCAGGAAGACGAATTTTGATCAACTTCTCCGTATCTCATCAGGAAGCTAACCG-TTTA
* * * *
5861 TTATTTCGTCATGCTTCTCAATATCTTATCAAGAAGCTGGGGTTCGAAGGCTTATTCATCGTGCG
129 TTACTTCGTCATGCTTCTCAGTATCTCATCAGGAAGCTGGGGTTCGAAGGCTTATTCATCGTGCG
* *
5926 TGAGTTCAGT
194 TGGGTTCGGT
*
5936 TTGGCCTTCTTCTCAGTATCTCATCAGGAAGATGATCGCGTCGTTTGTTTCAATCCGCTTCTCTG
1 TTGGCCTTCTTCTCAGTATCTCATCAGGAAGATGA-CGCGTCGTTTGTTTCAATTCGCTTCTCTG
* * * *
6001 TATCTCATCAGGAAGTCGAA-TTTGGTCTACTTCTCCGTATCTCATCAGGAGGCT-A------AT
65 TATCTCATCAGGAAGACGAATTTTGATCAACTTCTCCGTATCTCATCAGGAAGCTAACCGTTTAT
* * * * * ** ** *
6058 TACTTCGACACGCTTCTCAGTATCTCATCAGGGAGCCGTGGTTCGAAGATTTGCTCATGTCGAGC
130 TACTTCGTCATGCTTCTCAGTATCTCATCAGGAAGCTGGGGTTCGAAGGCTTATTCA--TCGTGC
* *
6123 ATGGGTTTGGT
193 GTGGGTTCGGT
*
6134 TTGGTCTTCTTCTCAGTATCTCATCAGGAAGATGATCGCGTCGTTTGTTTCAATTCGCTTCTCTG
1 TTGGCCTTCTTCTCAGTATCTCATCAGGAAGATGA-CGCGTCGTTTGTTTCAATTCGCTTCTCTG
* * * *
6199 TATCTCATCAGGAAGTCGAA-TTTGGTCTACTTCTCCGTATCTCATCAAGAAGCTAACCGTTTAT
65 TATCTCATCAGGAAGACGAATTTTGATCAACTTCTCCGTATCTCATCAGGAAGCTAACCGTTTAT
* * * * * * * * *
6263 TGCTCCGATC-TGCTTCTCGGTGTGTCATCAGGAAGCTGGGATTCGAAGACTTGCTCACATCGTG
130 TACTTCG-TCATGCTTCTCAGTATCTCATCAGGAAGCTGGGGTTCGAAGGCTT-AT-TCATCGTG
*
6327 CGTGGGTTTGGT
192 CGTGGGTTCGGT
* *
6339 TTGGTCTTCTTCTCAATATCTCATCAGGAAGATGAC
1 TTGGCCTTCTTCTCAGTATCTCATCAGGAAGATGAC
6375 CACGCCGTTT
Statistics
Matches: 710, Mismatches: 116, Indels: 55
0.81 0.13 0.06
Matches are distributed among these distances:
196 46 0.06
198 127 0.18
199 1 0.00
201 2 0.00
202 5 0.01
203 45 0.06
204 59 0.08
205 244 0.34
206 9 0.01
207 5 0.01
208 7 0.01
209 81 0.11
210 28 0.04
211 44 0.06
212 5 0.01
213 2 0.00
ACGTcount: A:0.20, C:0.23, G:0.21, T:0.36
Consensus pattern (203 bp):
TTGGCCTTCTTCTCAGTATCTCATCAGGAAGATGACGCGTCGTTTGTTTCAATTCGCTTCTCTGT
ATCTCATCAGGAAGACGAATTTTGATCAACTTCTCCGTATCTCATCAGGAAGCTAACCGTTTATT
ACTTCGTCATGCTTCTCAGTATCTCATCAGGAAGCTGGGGTTCGAAGGCTTATTCATCGTGCGTG
GGTTCGGT
Done.